PI0018476 (gene) Melon (PI 482460) v1

Overview


Name	PI0018476
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr09: 7803003 .. 7803206 (-)
RNA-Seq Expression	PI0018476
Synteny	PI0018476

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTGTTGTCTATTGCACAACCTCATCAACAGGGAGATGACTAACACTGAAATACCAGAGGATTACGACGAGGGTGATTTAACATACGCCACGACTGCCAATGACGACATTCATTATATTGAGACCTCAAACGAATGGAGTCAATGGAAGGATGGTCTAGCCAAAGAAATGTTCAATGAATGGGAGTTGCGTAATCAGTAA

mRNA sequence

ATGGCCTGTTGTCTATTGCACAACCTCATCAACAGGGAGATGACTAACACTGAAATACCAGAGGATTACGACGAGGGTGATTTAACATACGCCACGACTGCCAATGACGACATTCATTATATTGAGACCTCAAACGAATGGAGTCAATGGAAGGATGGTCTAGCCAAAGAAATGTTCAATGAATGGGAGTTGCGTAATCAGTAA

Coding sequence (CDS)

ATGGCCTGTTGTCTATTGCACAACCTCATCAACAGGGAGATGACTAACACTGAAATACCAGAGGATTACGACGAGGGTGATTTAACATACGCCACGACTGCCAATGACGACATTCATTATATTGAGACCTCAAACGAATGGAGTCAATGGAAGGATGGTCTAGCCAAAGAAATGTTCAATGAATGGGAGTTGCGTAATCAGTAA

Protein sequence

MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFNEWELRNQ

Homology

[Close]

BLAST of PI0018476 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-22
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFN 60
           +ACCLLHNLINREMTN +I ++ DE D T+ATTA DDIHYIETSNEWSQW+D LA+EMF 
Sbjct: 322 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEMFT 381

Query: 61  EWELRNQ 68
           EWELRNQ
Sbjct: 382 EWELRNQ 388

[Close]

BLAST of PI0018476 vs. ExPASy TrEMBL
Match: A0A5D3BDX0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00360 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-22
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFN 60
           +ACCLLHNLINREMTN +I ++ DE D T+ATTA DDIHYIETSNEWSQW+D LA+EMF 
Sbjct: 322 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEMFT 381

Query: 61  EWELRNQ 68
           EWELRNQ
Sbjct: 382 EWELRNQ 388

[Close]

BLAST of PI0018476 vs. ExPASy TrEMBL
Match: A0A5A7U476 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00800 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-22
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFN 60
           +ACCLLHNLINREMTN +I ++ DE D T+ATTA DDIHYIETSNEWSQW+D LA+EMF 
Sbjct: 322 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEMFT 381

Query: 61  EWELRNQ 68
           EWELRNQ
Sbjct: 382 EWELRNQ 388

[Close]

BLAST of PI0018476 vs. ExPASy TrEMBL
Match: A0A5A7TCB9 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13626G00010 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-22
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFN 60
           +ACCLLHNLINREMTN +I ++ DE D T+ATTA DDIHYIETSNEWSQW+D LA+EMF 
Sbjct: 126 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEMFT 185

Query: 61  EWELRNQ 68
           EWELRNQ
Sbjct: 186 EWELRNQ 192

[Close]

BLAST of PI0018476 vs. ExPASy TrEMBL
Match: A0A5D3D9Z3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold519G00220 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.9e-22
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFN 60
           +ACCLLHNLINREMTN +I ++ DE D T+ATTA DDIHYIETSNEWSQW+D LA+EMF 
Sbjct: 300 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFT 359

Query: 61  EWELRNQ 68
           EWELRNQ
Sbjct: 360 EWELRNQ 366

[Close]

BLAST of PI0018476 vs. NCBI nr
Match: KAA0048361.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.8 bits (286), Expect = 2.9e-22
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFN 60
           +ACCLLHNLINREMTN +I ++ DE D T+ATTA DDIHYIETSNEWSQW+D LA+EMF 
Sbjct: 322 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEMFT 381

Query: 61  EWELRNQ 68
           EWELRNQ
Sbjct: 382 EWELRNQ 388

[Close]

BLAST of PI0018476 vs. NCBI nr
Match: KAA0038929.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 114.8 bits (286), Expect = 2.9e-22
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFN 60
           +ACCLLHNLINREMTN +I ++ DE D T+ATTA DDIHYIETSNEWSQW+D LA+EMF 
Sbjct: 126 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEMFT 185

Query: 61  EWELRNQ 68
           EWELRNQ
Sbjct: 186 EWELRNQ 192

[Close]

BLAST of PI0018476 vs. NCBI nr
Match: KAA0035620.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0041646.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047363.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0048378.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.8 bits (286), Expect = 2.9e-22
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFN 60
           +ACCLLHNLINREMTN +I ++ DE D T+ATTA DDIHYIETSNEWSQW+D LA+EMF 
Sbjct: 322 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEMFT 381

Query: 61  EWELRNQ 68
           EWELRNQ
Sbjct: 382 EWELRNQ 388

[Close]

BLAST of PI0018476 vs. NCBI nr
Match: KAA0046727.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0056032.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0059561.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0065497.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.8 bits (286), Expect = 2.9e-22
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFN 60
           +ACCLLHNLINREMTN +I ++ DE D T+ATTA DDIHYIETSNEWSQW+D LA+EMF 
Sbjct: 322 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEMFT 381

Query: 61  EWELRNQ 68
           EWELRNQ
Sbjct: 382 EWELRNQ 388

[Close]

BLAST of PI0018476 vs. NCBI nr
Match: KAA0065286.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 3.8e-22
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFN 60
           +ACCLLHNLINREMTN +I ++ DE D T+ATTA DDIHYIETSNEWSQW+D LA+EMF 
Sbjct: 322 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFT 381

Query: 61  EWELRNQ 68
           EWELRNQ
Sbjct: 382 EWELRNQ 388

The following BLAST results are available for this feature:

BLAST of PI0018476 vs.


Match Name	E-value	Identity	Description

BLAST of PI0018476 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TXW1	1.4e-22	77.61	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BDX0	1.4e-22	77.61	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U476	1.4e-22	77.61	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TCB9	1.4e-22	77.61	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3D9Z3	1.9e-22	77.61	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0018476 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048361.1	2.9e-22	77.61	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0038929.1	2.9e-22	77.61	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0035620.1	2.9e-22	77.61	retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon...	[more]
KAA0046727.1	2.9e-22	77.61	retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon...	[more]
KAA0065286.1	3.8e-22	77.61	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0018476 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0018476.1	PI0018476.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding