PI0018424 (gene) Melon (PI 482460) v1

Overview
NamePI0018424
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Locationchr09: 11383821 .. 11384916 (-)
RNA-Seq ExpressionPI0018424
SyntenyPI0018424
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGAGATGACCATACGTGTGGCGAAGGCACCGAGAGGTTGCTCGCCTTAAAGAGGGATAGTAAAATATAATTCAAATCAAATGATTAGATACAAACCATCTTCTAACTTTAAGTATTTGGATCCCGTAAGGCAAGCAAGTATAGCTAACACACTAAAAAGAGGCTCGCCTTAATTCTGAAGTTAACAAATGCTTTGTATCACCTAGGTGTTAGTTATTGCTTGCTTTGTAAATTAACATTATTCCTACATAAATCCTTACCTAATTAATTGAGTACATGTTCGCATTACATTCACCGTTATGTTCCCCTTGCTAACTCCATTGCATAATTAGTGTAAATATATATAATCACACACTGTCCATATTTATACTGTATATACACCGCATGAGGTTAGAACACGCGATTAATTCACAAAGAAATCAAATTCCCTGTGTTCGACCCTGGCTTGCTTAGGAAACCTTTCGCTTCACTTATTATTGGGCAAGCAAAATGAGAACTTGTACGCACACGATGCATCATAAAATTTTTACAATGCATAGGTTAGAATTTAGCACATTTTAATGCATAATTCCAACTTAGACGTCTGATATAGTCGCATGCATAAATCCTTAACGCTAAATTTACAAAGAATAGTTTCACAATCAAGTTTTTGGGGCTGTTGCTGGGGAATTTAATAGTTTTCCTTTTTTAACTTAATTTGTGTGCTAATATCATGCAGAAGTTCTGTTTTCAGCTGAATCGTGTGCTTTCGCCGAAGAGTACGCAAGCAAGTTTATGAGTGAAGGTGAACAACCAGAATTCAGACTCAACCCTGAAATAGAGCGAACCTTTCGGAGGAATAGAAAAGCAAGGCAGAGGTTAAACAGAGCCAACAACATGAATAACCAAAACAACCAAAATAACCCTGCCAACCAAAATGCCAAAGAACAAAGCCCTGCCTACTTAGCCTACGATTTGGATGGACCTATAAGGTCATACGTTTCACCAAACTTGTATGATTTTAACCCTAGTATCACCTACCCCACGTTTGGCAAGAACGCTCGGTTTGAAATCAAGTCTGTCATGCTCCAGATAATACAAAATGCGGGATAA

mRNA sequence

ATGGCAGAGATGACCATACGTGTGGCGAAGGCACCGAGAGAAGTTCTGTTTTCAGCTGAATCGTGTGCTTTCGCCGAAGAGTACGCAAGCAAGTTTATGAGTGAAGGTGAACAACCAGAATTCAGACTCAACCCTGAAATAGAGCGAACCTTTCGGAGGAATAGAAAAGCAAGGCAGAGGTTAAACAGAGCCAACAACATGAATAACCAAAACAACCAAAATAACCCTGCCAACCAAAATGCCAAAGAACAAAGCCCTGCCTACTTAGCCTACGATTTGGATGGACCTATAAGGTCATACGTTTCACCAAACTTGTATGATTTTAACCCTAGTATCACCTACCCCACGTTTGGCAAGAACGCTCGGTTTGAAATCAAGTCTGTCATGCTCCAGATAATACAAAATGCGGGATAA

Coding sequence (CDS)

ATGGCAGAGATGACCATACGTGTGGCGAAGGCACCGAGAGAAGTTCTGTTTTCAGCTGAATCGTGTGCTTTCGCCGAAGAGTACGCAAGCAAGTTTATGAGTGAAGGTGAACAACCAGAATTCAGACTCAACCCTGAAATAGAGCGAACCTTTCGGAGGAATAGAAAAGCAAGGCAGAGGTTAAACAGAGCCAACAACATGAATAACCAAAACAACCAAAATAACCCTGCCAACCAAAATGCCAAAGAACAAAGCCCTGCCTACTTAGCCTACGATTTGGATGGACCTATAAGGTCATACGTTTCACCAAACTTGTATGATTTTAACCCTAGTATCACCTACCCCACGTTTGGCAAGAACGCTCGGTTTGAAATCAAGTCTGTCATGCTCCAGATAATACAAAATGCGGGATAA

Protein sequence

MAEMTIRVAKAPREVLFSAESCAFAEEYASKFMSEGEQPEFRLNPEIERTFRRNRKARQRLNRANNMNNQNNQNNPANQNAKEQSPAYLAYDLDGPIRSYVSPNLYDFNPSITYPTFGKNARFEIKSVMLQIIQNAG
Homology
BLAST of PI0018424 vs. ExPASy TrEMBL
Match: A0A5D3CAB5 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00060 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.7e-20
Identity = 58/101 (57.43%), Postives = 73/101 (72.28%), Query Frame = 0

Query: 33  MSEGEQPEFRLNPEIERTFRRNRKARQRLNRANNMNNQNNQNNPANQNAKEQSPAYLAYD 92
           MSEGEQP+F ++ EIER F+RNR+ R+R  R N  N+QNNQ  PANQ  +  +  YLA++
Sbjct: 1   MSEGEQPKFVIDLEIERIFQRNRRQRKRRQRTNKSNSQNNQEAPANQAIQVVNLTYLAHN 60

Query: 93  LDGPIRSYVSPNLYDFNPSITYPTFGKNARFEIKSVMLQII 134
            D PIRS  SPNLY FNP I YP FG+N RF+IK VML ++
Sbjct: 61  RDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVMLSLL 101

BLAST of PI0018424 vs. ExPASy TrEMBL
Match: A0A5A7UXZ2 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00610 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.7e-20
Identity = 58/101 (57.43%), Postives = 73/101 (72.28%), Query Frame = 0

Query: 33  MSEGEQPEFRLNPEIERTFRRNRKARQRLNRANNMNNQNNQNNPANQNAKEQSPAYLAYD 92
           MSEGEQP+F ++ EIER F+RNR+ R+R  R N  N+QNNQ  PANQ  +  +  YLA++
Sbjct: 1   MSEGEQPKFVIDLEIERIFQRNRRQRKRRQRTNKSNSQNNQEAPANQAIQVVNLTYLAHN 60

Query: 93  LDGPIRSYVSPNLYDFNPSITYPTFGKNARFEIKSVMLQII 134
            D PIRS  SPNLY FNP I YP FG+N RF+IK VML ++
Sbjct: 61  RDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVMLSLL 101

BLAST of PI0018424 vs. ExPASy TrEMBL
Match: A0A5A7V2U7 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001950 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.0e-19
Identity = 53/71 (74.65%), Postives = 56/71 (78.87%), Query Frame = 0

Query: 67  MNNQNNQNNPANQNAKEQSPAYLAYDLDGPIRSYVSPNLYDFNPSITYPTFGKNARFEIK 126
           MNNQNNQ  PANQ A+  +P YLA D D PIRSY SPNLYDFNP I YPTF +N RFEIK
Sbjct: 1   MNNQNNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIK 60

Query: 127 SVMLQIIQNAG 138
            VMLQIIQNAG
Sbjct: 61  LVMLQIIQNAG 71

BLAST of PI0018424 vs. ExPASy TrEMBL
Match: A0A5A7UDN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00900 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.3e-17
Identity = 47/67 (70.15%), Postives = 54/67 (80.60%), Query Frame = 0

Query: 71  NNQNNPANQNAKEQSPAYLAYDLDGPIRSYVSPNLYDFNPSITYPTFGKNARFEIKSVML 130
           NNQNNPA QN +EQ+PAYLA+DLD PI+SY SPNLYDFNP I Y  FG+N  FEIK +ML
Sbjct: 2   NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

Query: 131 QIIQNAG 138
            + QNAG
Sbjct: 62  YMTQNAG 68

BLAST of PI0018424 vs. ExPASy TrEMBL
Match: A0A5A7U2F0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001090 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.9e-11
Identity = 38/59 (64.41%), Postives = 46/59 (77.97%), Query Frame = 0

Query: 63  RANNMNNQNNQNNPANQNAKEQSPAYLAYDLDGPIRSYVSPNLYDFNPSITYPTFGKNA 122
           R N + NQNN+    NQNA+EQ+P YLA+ +D PIRSY S NLYDFNP ITYPTFG+N+
Sbjct: 6   RVNPIENQNNKGVATNQNAQEQNPTYLAHYMDKPIRSYASQNLYDFNPCITYPTFGENS 64

BLAST of PI0018424 vs. NCBI nr
Match: TYK08803.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 5.6e-20
Identity = 58/101 (57.43%), Postives = 73/101 (72.28%), Query Frame = 0

Query: 33  MSEGEQPEFRLNPEIERTFRRNRKARQRLNRANNMNNQNNQNNPANQNAKEQSPAYLAYD 92
           MSEGEQP+F ++ EIER F+RNR+ R+R  R N  N+QNNQ  PANQ  +  +  YLA++
Sbjct: 1   MSEGEQPKFVIDLEIERIFQRNRRQRKRRQRTNKSNSQNNQEAPANQAIQVVNLTYLAHN 60

Query: 93  LDGPIRSYVSPNLYDFNPSITYPTFGKNARFEIKSVMLQII 134
            D PIRS  SPNLY FNP I YP FG+N RF+IK VML ++
Sbjct: 61  RDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVMLSLL 101

BLAST of PI0018424 vs. NCBI nr
Match: KAA0060833.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 5.6e-20
Identity = 58/101 (57.43%), Postives = 73/101 (72.28%), Query Frame = 0

Query: 33  MSEGEQPEFRLNPEIERTFRRNRKARQRLNRANNMNNQNNQNNPANQNAKEQSPAYLAYD 92
           MSEGEQP+F ++ EIER F+RNR+ R+R  R N  N+QNNQ  PANQ  +  +  YLA++
Sbjct: 1   MSEGEQPKFVIDLEIERIFQRNRRQRKRRQRTNKSNSQNNQEAPANQAIQVVNLTYLAHN 60

Query: 93  LDGPIRSYVSPNLYDFNPSITYPTFGKNARFEIKSVMLQII 134
            D PIRS  SPNLY FNP I YP FG+N RF+IK VML ++
Sbjct: 61  RDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVMLSLL 101

BLAST of PI0018424 vs. NCBI nr
Match: KAA0062403.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK26578.1 putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 6.2e-19
Identity = 53/71 (74.65%), Postives = 56/71 (78.87%), Query Frame = 0

Query: 67  MNNQNNQNNPANQNAKEQSPAYLAYDLDGPIRSYVSPNLYDFNPSITYPTFGKNARFEIK 126
           MNNQNNQ  PANQ A+  +P YLA D D PIRSY SPNLYDFNP I YPTF +N RFEIK
Sbjct: 1   MNNQNNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIK 60

Query: 127 SVMLQIIQNAG 138
            VMLQIIQNAG
Sbjct: 61  LVMLQIIQNAG 71

BLAST of PI0018424 vs. NCBI nr
Match: KAA0051815.1 (hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK21429.1 hypothetical protein E5676_scaffold609G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 2.6e-17
Identity = 47/67 (70.15%), Postives = 54/67 (80.60%), Query Frame = 0

Query: 71  NNQNNPANQNAKEQSPAYLAYDLDGPIRSYVSPNLYDFNPSITYPTFGKNARFEIKSVML 130
           NNQNNPA QN +EQ+PAYLA+DLD PI+SY SPNLYDFNP I Y  FG+N  FEIK +ML
Sbjct: 2   NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

Query: 131 QIIQNAG 138
            + QNAG
Sbjct: 62  YMTQNAG 68

BLAST of PI0018424 vs. NCBI nr
Match: XP_038887458.1 (uncharacterized protein LOC120077591 [Benincasa hispida])

HSP 1 Score: 88.6 bits (218), Expect = 4.6e-14
Identity = 54/107 (50.47%), Postives = 70/107 (65.42%), Query Frame = 0

Query: 33  MSEGEQPEFRLNPEIERTFR----RNRKARQRLNRANNMNNQNNQNNPANQNAKEQSPAY 92
           MS    PEF  NPEI+ TFR    +NR  R+R+N A+N NN+  + N    N   Q P +
Sbjct: 1   MSTRTDPEFEANPEIDHTFRTRAHQNRAWRRRINMADNNNNEAPEGN-QGVNRPVQDPVF 60

Query: 93  LAYDLDGPIRSYVSPNLYDFNPSITYPTFGKNARFEIKSVMLQIIQN 136
           LA D + PIR+Y +PNLYDF+P I+ P   +NARFEIK VM+Q+IQN
Sbjct: 61  LAADHNIPIRNYAAPNLYDFSPGISRPIVEENARFEIKPVMVQMIQN 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CAB52.7e-2057.43Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... [more]
A0A5A7UXZ22.7e-2057.43Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... [more]
A0A5A7V2U73.0e-1974.65Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7UDN81.3e-1770.15Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U2F03.9e-1164.41Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
TYK08803.15.6e-2057.43Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw... [more]
KAA0060833.15.6e-2057.43Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw... [more]
KAA0062403.16.2e-1974.65putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK... [more]
KAA0051815.12.6e-1770.15hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK2142... [more]
XP_038887458.14.6e-1450.47uncharacterized protein LOC120077591 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 47..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..86
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0018424.1PI0018424.1mRNA