PI0018377 (gene) Melon (PI 482460) v1

Overview


Name	PI0018377
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	AT-hook motif nuclear-localized protein 20-like
Location	chr06: 3503888 .. 3504386 (+)
RNA-Seq Expression	PI0018377
Synteny	PI0018377

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAACTTCTTCAACTCTTCTGTTTACCCACTTTGATCTACACAAAAGAGAAGAAATGTCCGATGCAGAGAGAAAAACTGCCACCCTTGCGCCCACGAGGCTGCAGAGCCAGGCTCCAGCATCGATCGAGATAAAGCGGGTACCGAATTGGAACGTGGCTATACCATTATTATCCCCTCTTGTATCAGCTTCGTCTTGTGGGAATTCAGGGCCAGAAGAAGTGTTGTTAATGGCTGAGAATAATGCGAGGAAGGAAACCAAAGGGCTAACCTTTACTAAATGGCAGCACCCTGCGGCTCCGTTTTATTATGAACCTGTCCCAAGAGCTAACCCCTTTGTGCCTGTGTGAATATTTCTTTTCTTCTTTTTTAACAATTATTGTTCTGCTTAATCCATGGAACAATTTGTATGTATAAAGTTACATGAGATTGAATCTTTCATCTCATAATTGTACACAATCTTCTTTTTTTCATATATTTATTTAAGCTCATTTTATTAA

mRNA sequence

CTAAACTTCTTCAACTCTTCTGTTTACCCACTTTGATCTACACAAAAGAGAAGAAATGTCCGATGCAGAGAGAAAAACTGCCACCCTTGCGCCCACGAGGCTGCAGAGCCAGGCTCCAGCATCGATCGAGATAAAGCGGGTACCGAATTGGAACGTGGCTATACCATTATTATCCCCTCTTGTATCAGCTTCGTCTTGTGGGAATTCAGGGCCAGAAGAAGTGTTGTTAATGGCTGAGAATAATGCGAGGAAGGAAACCAAAGGGCTAACCTTTACTAAATGGCAGCACCCTGCGGCTCCGTTTTATTATGAACCTGTCCCAAGAGCTAACCCCTTTGTGCCTGTGTGAATATTTCTTTTCTTCTTTTTTAACAATTATTGTTCTGCTTAATCCATGGAACAATTTGTATGTATAAAGTTACATGAGATTGAATCTTTCATCTCATAATTGTACACAATCTTCTTTTTTTCATATATTTATTTAAGCTCATTTTATTAA

Coding sequence (CDS)

ATGTCCGATGCAGAGAGAAAAACTGCCACCCTTGCGCCCACGAGGCTGCAGAGCCAGGCTCCAGCATCGATCGAGATAAAGCGGGTACCGAATTGGAACGTGGCTATACCATTATTATCCCCTCTTGTATCAGCTTCGTCTTGTGGGAATTCAGGGCCAGAAGAAGTGTTGTTAATGGCTGAGAATAATGCGAGGAAGGAAACCAAAGGGCTAACCTTTACTAAATGGCAGCACCCTGCGGCTCCGTTTTATTATGAACCTGTCCCAAGAGCTAACCCCTTTGTGCCTGTGTGA

Protein sequence

MSDAERKTATLAPTRLQSQAPASIEIKRVPNWNVAIPLLSPLVSASSCGNSGPEEVLLMAENNARKETKGLTFTKWQHPAAPFYYEPVPRANPFVPV

Homology

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BLAST of PI0018377 vs. ExPASy Swiss-Prot
Match: Q6NN02 (Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g14450 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-07
Identity = 38/88 (43.18%), Postives = 47/88 (53.41%), Query Frame = 0


Query: 14  TRLQSQAPA-SIEIKRVPNWNVAIPLLSPLVSA--SSCGNSGPEEVLLMAENNARKETKG 73
           ++LQ +AP+  I+     NWNVAIPLLSPL  +  SS   S         E    +E K 
Sbjct: 38  SQLQRRAPSLMIKPTSFSNWNVAIPLLSPLAPSLTSSFDQSHVPPPQNKTEIPVEEEVKK 97

Query: 74  L-TFTKWQHPAAPFYYEPVPRANPFVPV 98
              F KWQHPA+PF YEP     PF+ V
Sbjct: 98  TPVFKKWQHPASPFCYEPTTFVPPFIQV 125

[Close]

BLAST of PI0018377 vs. ExPASy TrEMBL
Match: A0A0A0L8D3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G141830 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.3e-40
Identity = 88/98 (89.80%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1  MSDAERKTA-TLAPTRLQSQAPASIEIKRVPNWNVAIPLLSPLVSASSCGNSGPEEVLLM 60
          MSDAERKTA T+APTRLQSQAPASIEIKR  NWNVAIPLLSPLVS SSCGNS PE++L M
Sbjct: 1  MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSM 60

Query: 61 AENNARKETKGLTFTKWQHPAAPFYYEPVPRANPFVPV 98
          AENNAR+ETKGLTFTKWQHPAAPFYYEPVPRANPFVPV
Sbjct: 61 AENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPV 98

[Close]

BLAST of PI0018377 vs. ExPASy TrEMBL
Match: A0A5D3D1A6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001320 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.4e-39
Identity = 85/97 (87.63%), Postives = 89/97 (91.75%), Query Frame = 0


Query: 1  MSDAERKTATLAPTRLQSQAPASIEIKRVPNWNVAIPLLSPLVSASSCGNSGPEEVLLMA 60
          MSDAERKTA  APTRLQSQAPASIEIKRV +WNV IPLLSPLVS SSCGNSGPE+VL MA
Sbjct: 1  MSDAERKTANPAPTRLQSQAPASIEIKRVLDWNVVIPLLSPLVSPSSCGNSGPEKVLSMA 60

Query: 61 ENNARKETKGLTFTKWQHPAAPFYYEPVPRANPFVPV 98
          +NNAR+E KGLTFTKWQHPAAPFYYEPVPRAN FVPV
Sbjct: 61 DNNAREENKGLTFTKWQHPAAPFYYEPVPRANAFVPV 97

[Close]

BLAST of PI0018377 vs. ExPASy TrEMBL
Match: A0A6J1E8H9 (AT-hook motif nuclear-localized protein 20-like OS=Cucurbita moschata OX=3662 GN=LOC111431828 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.0e-21
Identity = 59/87 (67.82%), Postives = 66/87 (75.86%), Query Frame = 0


Query: 1  MSDAERKTATLAPTRLQSQAPASIEIKRVPNWNVAIPLLSPLVSASSCGNSGPEEVLLMA 60
          M+ +ER+     PTRLQSQAPASI I R  NWNVAIPLL+PLVSAS CGNS  ++VLLM 
Sbjct: 1  MAGSERRNT--PPTRLQSQAPASIVINRASNWNVAIPLLTPLVSASPCGNSS-QDVLLMG 60

Query: 61 ENNARKETKGLTFTKWQHPAAPFYYEP 88
          EN AR+ETKGL  TKWQHPA PF   P
Sbjct: 61 ENKAREETKGLNVTKWQHPACPFLANP 84

[Close]

BLAST of PI0018377 vs. ExPASy TrEMBL
Match: A0A6J1CRZ0 (uncharacterized protein At4g14450, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111013769 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.6e-17
Identity = 59/106 (55.66%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 1   MSDAERKTA----TLAPTRLQSQAPASIEIKRVPNWNVAIPLLSPLVSASSCGNSGPEEV 60
           M DAER+ A    +   TRLQ +AP+SI+I R  +WNVAIPLLSPLVS         E+V
Sbjct: 1   MGDAERRGAGDSVSQEATRLQRRAPSSIQISRPASWNVAIPLLSPLVSPCL------EQV 60

Query: 61  -LLMAENNARKET----KGLTFTKWQHPAAPFYYEPVPRANPFVPV 98
            +LM EN AR+E     K  TFT+W+HPAAPFYY PV R  PFVPV
Sbjct: 61  DVLMGENKAREEARSRDKPATFTRWKHPAAPFYYGPVQRTTPFVPV 100

[Close]

BLAST of PI0018377 vs. ExPASy TrEMBL
Match: A0A2P5A713 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_362290 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.2e-15
Identity = 49/93 (52.69%), Postives = 60/93 (64.52%), Query Frame = 0


Query: 13  PTRLQSQAPASIEIKRVPNWNVAIPLLSPLVSASSCGNSGPEEVLLMAENNARKE----- 72
           P+RLQ +APAS++I  V +WNVAIPLLSPL S S    S P+ +   AEN +R++     
Sbjct: 17  PSRLQRRAPASLQISPVSDWNVAIPLLSPLASPS----SSPKALDRTAENKSREDQRRLV 76

Query: 73  ---TKGLTFTKWQHPAAPFYYEPVPRANPFVPV 98
               K + F KWQHPAAPF YEP P   PFVPV
Sbjct: 77  AEPDKPIVFKKWQHPAAPFCYEPAPLVRPFVPV 105

[Close]

BLAST of PI0018377 vs. NCBI nr
Match: KAE8650334.1 (hypothetical protein Csa_009641 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 2.6e-40
Identity = 88/98 (89.80%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1  MSDAERKTA-TLAPTRLQSQAPASIEIKRVPNWNVAIPLLSPLVSASSCGNSGPEEVLLM 60
          MSDAERKTA T+APTRLQSQAPASIEIKR  NWNVAIPLLSPLVS SSCGNS PE++L M
Sbjct: 1  MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSM 60

Query: 61 AENNARKETKGLTFTKWQHPAAPFYYEPVPRANPFVPV 98
          AENNAR+ETKGLTFTKWQHPAAPFYYEPVPRANPFVPV
Sbjct: 61 AENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPV 98

[Close]

BLAST of PI0018377 vs. NCBI nr
Match: KAA0049279.1 (hypothetical protein E6C27_scaffold171G005190 [Cucumis melo var. makuwa] >TYK17278.1 hypothetical protein E5676_scaffold434G001320 [Cucumis melo var. makuwa])

HSP 1 Score: 171.8 bits (434), Expect = 2.9e-39
Identity = 85/97 (87.63%), Postives = 89/97 (91.75%), Query Frame = 0


Query: 1  MSDAERKTATLAPTRLQSQAPASIEIKRVPNWNVAIPLLSPLVSASSCGNSGPEEVLLMA 60
          MSDAERKTA  APTRLQSQAPASIEIKRV +WNV IPLLSPLVS SSCGNSGPE+VL MA
Sbjct: 1  MSDAERKTANPAPTRLQSQAPASIEIKRVLDWNVVIPLLSPLVSPSSCGNSGPEKVLSMA 60

Query: 61 ENNARKETKGLTFTKWQHPAAPFYYEPVPRANPFVPV 98
          +NNAR+E KGLTFTKWQHPAAPFYYEPVPRAN FVPV
Sbjct: 61 DNNAREENKGLTFTKWQHPAAPFYYEPVPRANAFVPV 97

[Close]

BLAST of PI0018377 vs. NCBI nr
Match: XP_023526926.1 (AT-hook motif nuclear-localized protein 20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 113.6 bits (283), Expect = 9.5e-22
Identity = 60/87 (68.97%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 1  MSDAERKTATLAPTRLQSQAPASIEIKRVPNWNVAIPLLSPLVSASSCGNSGPEEVLLMA 60
          M+ +ER+     PTRLQSQAPASI I R  NWNVAIPLL+PLVSAS CGNS  ++VLL A
Sbjct: 1  MAGSERRNT--PPTRLQSQAPASIVINRASNWNVAIPLLTPLVSASPCGNSS-QDVLLTA 60

Query: 61 ENNARKETKGLTFTKWQHPAAPFYYEP 88
          EN AR+ETKGLT TKWQHPA PF   P
Sbjct: 61 ENKAREETKGLTVTKWQHPACPFLANP 84

[Close]

BLAST of PI0018377 vs. NCBI nr
Match: XP_022924297.1 (AT-hook motif nuclear-localized protein 20-like [Cucurbita moschata])

HSP 1 Score: 112.5 bits (280), Expect = 2.1e-21
Identity = 59/87 (67.82%), Postives = 66/87 (75.86%), Query Frame = 0


Query: 1  MSDAERKTATLAPTRLQSQAPASIEIKRVPNWNVAIPLLSPLVSASSCGNSGPEEVLLMA 60
          M+ +ER+     PTRLQSQAPASI I R  NWNVAIPLL+PLVSAS CGNS  ++VLLM 
Sbjct: 1  MAGSERRNT--PPTRLQSQAPASIVINRASNWNVAIPLLTPLVSASPCGNSS-QDVLLMG 60

Query: 61 ENNARKETKGLTFTKWQHPAAPFYYEP 88
          EN AR+ETKGL  TKWQHPA PF   P
Sbjct: 61 ENKAREETKGLNVTKWQHPACPFLANP 84

[Close]

BLAST of PI0018377 vs. NCBI nr
Match: KAG6582368.1 (AT-hook motif nuclear-localized protein 20, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018779.1 AT-hook motif nuclear-localized protein 20, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.9 bits (276), Expect = 6.1e-21
Identity = 61/97 (62.89%), Postives = 69/97 (71.13%), Query Frame = 0


Query: 1  MSDAERKTATLAPTRLQSQAPASIEIKRVPNWNVAIPLLSPLVSASSCGNSGPEEVLLMA 60
          M+ +ER+     PTRLQSQAPASI I R  NWNVAIPLL+PLVSAS CGNS  ++VLLM 
Sbjct: 1  MAGSERRNT--PPTRLQSQAPASIVINRASNWNVAIPLLTPLVSASPCGNSS-QDVLLMG 60

Query: 61 ENNARKETKGLTFTKWQHPAAPFYYEPVPRANPFVPV 98
          EN AR+E      TKWQHPA P Y  P+P   PFVPV
Sbjct: 61 ENKAREE------TKWQHPACPLYDGPLPMGTPFVPV 88

[Close]

BLAST of PI0018377 vs. TAIR 10
Match: AT1G04330.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23170.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.5 bits (153), Expect = 1.0e-10
Identity = 40/84 (47.62%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 14 TRLQSQAPASIEIKRV-PNWNVAIPLLSPLVSASSCGNSGPEEVLLMAENNARKET-KGL 73
          +RLQ +AP  ++I     NW VAIPLLSP  S        P  V+   E    KE  K  
Sbjct: 17 SRLQRRAPPPLKINPCEANWKVAIPLLSPTESPP----QKPPAVMKREEQRWGKEAEKPP 76

Query: 74 TFTKWQHPAAPFYYEPVPRAN-PF 95
           F KWQHPAAPFYY+P P +N PF
Sbjct: 77 VFKKWQHPAAPFYYQPAPSSNQPF 96

[Close]

BLAST of PI0018377 vs. TAIR 10
Match: AT3G23170.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14450.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 3.0e-10
Identity = 41/90 (45.56%), Postives = 48/90 (53.33%), Query Frame = 0


Query: 13  PTRLQSQAPASIEIKRVP---NWNVAIPLLSPLVSA--SSCGNSGPEEVLLMAENNARKE 72
           P+RL  + PA   +   P   NWN AIPLLSPL  +  SS  +  P E     ++ A   
Sbjct: 21  PSRLLKRPPALKIVPATPAANNWNTAIPLLSPLALSPESSPVDQPPVE---KNQSTAVAV 80

Query: 73  TKGLTFTKWQHPAAPFYYEPVPRANPFVPV 98
            K   F KWQHPAAPFYYE      PFVPV
Sbjct: 81  EKTPVFKKWQHPAAPFYYESSTFVPPFVPV 107

[Close]

BLAST of PI0018377 vs. TAIR 10
Match: AT4G14450.1 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23170.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.0 bits (136), Expect = 9.8e-09
Identity = 38/88 (43.18%), Postives = 47/88 (53.41%), Query Frame = 0


Query: 14  TRLQSQAPA-SIEIKRVPNWNVAIPLLSPLVSA--SSCGNSGPEEVLLMAENNARKETKG 73
           ++LQ +AP+  I+     NWNVAIPLLSPL  +  SS   S         E    +E K 
Sbjct: 38  SQLQRRAPSLMIKPTSFSNWNVAIPLLSPLAPSLTSSFDQSHVPPPQNKTEIPVEEEVKK 97

Query: 74  L-TFTKWQHPAAPFYYEPVPRANPFVPV 98
              F KWQHPA+PF YEP     PF+ V
Sbjct: 98  TPVFKKWQHPASPFCYEPTTFVPPFIQV 125

The following BLAST results are available for this feature:

BLAST of PI0018377 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NN02	1.4e-07	43.18	Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of PI0018377 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8D3	1.3e-40	89.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G141830 PE=4 SV=1	[more]
A0A5D3D1A6	1.4e-39	87.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1E8H9	1.0e-21	67.82	AT-hook motif nuclear-localized protein 20-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1CRZ0	2.6e-17	55.66	uncharacterized protein At4g14450, chloroplastic-like OS=Momordica charantia OX=...	[more]
A0A2P5A713	3.2e-15	52.69	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_362290 PE...	[more]

BLAST of PI0018377 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650334.1	2.6e-40	89.80	hypothetical protein Csa_009641 [Cucumis sativus]	[more]
KAA0049279.1	2.9e-39	87.63	hypothetical protein E6C27_scaffold171G005190 [Cucumis melo var. makuwa] >TYK172...	[more]
XP_023526926.1	9.5e-22	68.97	AT-hook motif nuclear-localized protein 20-like [Cucurbita pepo subsp. pepo]	[more]
XP_022924297.1	2.1e-21	67.82	AT-hook motif nuclear-localized protein 20-like [Cucurbita moschata]	[more]
KAG6582368.1	6.1e-21	62.89	AT-hook motif nuclear-localized protein 20, partial [Cucurbita argyrosperma subs...	[more]

BLAST of PI0018377 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04330.1	1.0e-10	47.62	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G23170.1	3.0e-10	45.56	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G14450.1	9.8e-09	43.18	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33912:SF2	PUTATIVE-RELATED	coord: 5..97
IPR040381	Uncharacterized protein At4g14450-like	PANTHER	PTHR33912	OS01G0939400 PROTEIN	coord: 5..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0018377.1	PI0018377.1	mRNA