Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAAAACAAAGCATTTCATTACTCTCAAATTGTAGTTCCTGTTAAAACCATCTTCAATTTTGGTTCAATTACCAATCACACAAATATGGCTTCCGTTAGGGCTGTTGCCGTTGTCACTTTCCTACTTGGCGTGTCCGTCATTGTATCAGAAAGCCGTGTGGCTAGAAAAGACTTGGGCCTCGACCTTGGCGGAGTGGGCCTTGGTGTTGGCACGGGAGTGGGCTTGGGCTTAGGTGGAAGTGGTTCGGGTTCTGGATCTGGCTCCGGGTCTGGATCTGGGTCTGGGTCCAGTTCTGCTTCCTCATCACACTCCTCAAGCTCAAGCTCTGGCTCCGACGCTGGGTCCGAAGCCGGTTCATACGCCGGATCTGGTTCAGGCAGAAACAGGAACGGTGGATCGGGTTCAGGGAGGGGAAACGGTGAAGGATACGGCGAGGGGCATGGTTATGGCAACGGCGGCGAAAACTGAGATCAAACTTAAACTATAATTAATGATAATATGAAATTAATTAAGGATGATAATCGTCTTTTCCTTTTGCAAATAGATTAATAAAAGCTATAGATGATGAATCCTTAATTGTATTCCTGTTTTGTTCTTCTAGTCTAGTTTATATATATATATGTATATGAAATTTGAATAAAAATGTTGTTCCTATTTAGTGTTAATGAAATTATGGGTAATTATAATATACA
mRNA sequence
CAAAAAACAAAGCATTTCATTACTCTCAAATTGTAGTTCCTGTTAAAACCATCTTCAATTTTGGTTCAATTACCAATCACACAAATATGGCTTCCGTTAGGGCTGTTGCCGTTGTCACTTTCCTACTTGGCGTGTCCGTCATTGTATCAGAAAGCCGTGTGGCTAGAAAAGACTTGGGCCTCGACCTTGGCGGAGTGGGCCTTGGTGTTGGCACGGGAGTGGGCTTGGGCTTAGGTGGAAGTGGTTCGGGTTCTGGATCTGGCTCCGGGTCTGGATCTGGGTCTGGGTCCAGTTCTGCTTCCTCATCACACTCCTCAAGCTCAAGCTCTGGCTCCGACGCTGGGTCCGAAGCCGGTTCATACGCCGGATCTGGTTCAGGCAGAAACAGGAACGGTGGATCGGGTTCAGGGAGGGGAAACGGTGAAGGATACGGCGAGGGGCATGGTTATGGCAACGGCGGCGAAAACTGAGATCAAACTTAAACTATAATTAATGATAATATGAAATTAATTAAGGATGATAATCGTCTTTTCCTTTTGCAAATAGATTAATAAAAGCTATAGATGATGAATCCTTAATTGTATTCCTGTTTTGTTCTTCTAGTCTAGTTTATATATATATATGTATATGAAATTTGAATAAAAATGTTGTTCCTATTTAGTGTTAATGAAATTATGGGTAATTATAATATACA
Coding sequence (CDS)
ATGGCTTCCGTTAGGGCTGTTGCCGTTGTCACTTTCCTACTTGGCGTGTCCGTCATTGTATCAGAAAGCCGTGTGGCTAGAAAAGACTTGGGCCTCGACCTTGGCGGAGTGGGCCTTGGTGTTGGCACGGGAGTGGGCTTGGGCTTAGGTGGAAGTGGTTCGGGTTCTGGATCTGGCTCCGGGTCTGGATCTGGGTCTGGGTCCAGTTCTGCTTCCTCATCACACTCCTCAAGCTCAAGCTCTGGCTCCGACGCTGGGTCCGAAGCCGGTTCATACGCCGGATCTGGTTCAGGCAGAAACAGGAACGGTGGATCGGGTTCAGGGAGGGGAAACGGTGAAGGATACGGCGAGGGGCATGGTTATGGCAACGGCGGCGAAAACTGA
Protein sequence
MASVRAVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGSGSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSGSGRNRNGGSGSGRGNGEGYGEGHGYGNGGEN
Homology
BLAST of PI0018272 vs. ExPASy TrEMBL
Match:
A0A6J1E1T0 (glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111430015 PE=4 SV=1)
HSP 1 Score: 144.1 bits (362), Expect = 4.1e-31
Identity = 113/147 (76.87%), Postives = 121/147 (82.31%), Query Frame = 0
Query: 1 MASVRAVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
MAS+RAV+++ LL +SVIVSESRVAR DLGLDLGGVG+G+GTGVGLGLGGSGSGSGSGS
Sbjct: 1 MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60
Query: 61 GSGSGSGSSSASSSHSSSSSSGSDAGSE----AGSYAGSGSGRNRNGGSGSGRGN----- 120
GSGSGSGSSSASSSHSSSSSSGSDAGSE AGSYAGSGSGRNRNGGSGSG G+
Sbjct: 61 GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSGSGRNRNGGSGSGSGSGSGYG 120
Query: 121 -----------GEGYGEGHGYGNGGEN 128
GEGYGEGHGYGN GEN
Sbjct: 121 AGSGRGSGSGGGEGYGEGHGYGNDGEN 147
BLAST of PI0018272 vs. ExPASy TrEMBL
Match:
A0A1S3B8Y8 (putative glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=LOC103487315 PE=4 SV=1)
HSP 1 Score: 138.7 bits (348), Expect = 1.7e-29
Identity = 112/144 (77.78%), Postives = 114/144 (79.17%), Query Frame = 0
Query: 1 MASVRAVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
MAS+R VAVVTFLLGVSVIVSESRVARKDLGLDLGG+GLGVGTGVGLGL GSGS
Sbjct: 1 MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGMGLGVGTGVGLGL------DGSGS 60
Query: 61 GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSY--------AGSGSGRNRNGGSGSGR--- 120
G GSG GSSSASSSHSSSSSSGSDAGSEAGSY AGSGSGRNRNGGSGSG
Sbjct: 61 GFGSGPGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTG 120
Query: 121 ------GNGEGYGEGHGYGNGGEN 128
G G GYGEGHGYGNGGEN
Sbjct: 121 NGGEGYGEGHGYGEGHGYGNGGEN 138
BLAST of PI0018272 vs. ExPASy TrEMBL
Match:
A0A0A0LZ57 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G287000 PE=4 SV=1)
HSP 1 Score: 134.8 bits (338), Expect = 2.5e-28
Identity = 107/130 (82.31%), Postives = 110/130 (84.62%), Query Frame = 0
Query: 1 MASVRAVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
MAS+R+VAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTG+GLGLG GSGSGS
Sbjct: 1 MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLG----GSGSGS 60
Query: 61 GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSGSGRNRNG--GSGSGRGN-GEGYGE 120
GSGSGSGSSSAS SHS S AGSY GSGSGRNRNG GSGSGRGN GEGYGE
Sbjct: 61 GSGSGSGSSSASLSHS----------SYAGSYVGSGSGRNRNGGSGSGSGRGNGGEGYGE 116
Query: 121 GHGYGNGGEN 128
GHGYGNGGEN
Sbjct: 121 GHGYGNGGEN 116
BLAST of PI0018272 vs. ExPASy TrEMBL
Match:
A0A6J1E521 (putative glycine-rich cell wall structural protein 1 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111430014 PE=4 SV=1)
HSP 1 Score: 120.9 bits (302), Expect = 3.8e-24
Identity = 101/142 (71.13%), Postives = 113/142 (79.58%), Query Frame = 0
Query: 1 MASVRAVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
MAS+ ++ VV FLL SVI+S++RVARKDLGLDLGG+G+G+GTG+GLGLGGSGSGSGSGS
Sbjct: 1 MASINSLIVVCFLLSFSVILSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSGS 60
Query: 61 GSGSGSG--SSSASSSHSSSSSSGSDAGSEAGSY----AGSGSGRNRNGGS--------- 120
GSGSGSG SSS+SSS+SSSS SGS AGSEAGSY AGSGSG NRNGGS
Sbjct: 61 GSGSGSGSSSSSSSSSYSSSSGSGSGAGSEAGSYAGSRAGSGSGPNRNGGSGSGSGYGGG 120
Query: 121 ---GSGRGNGEGYGEGHGYGNG 125
GSG G GEGYGEGHGYG G
Sbjct: 121 SGRGSGNGGGEGYGEGHGYGEG 142
BLAST of PI0018272 vs. ExPASy TrEMBL
Match:
A0A0A0LTK9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278500 PE=4 SV=1)
HSP 1 Score: 119.4 bits (298), Expect = 1.1e-23
Identity = 103/146 (70.55%), Postives = 115/146 (78.77%), Query Frame = 0
Query: 1 MASVRAVA-VVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSG 60
MAS++++A VV LL S I+SE RVARKDLG+DLGGVG+G+GTG+GLG+GGSGSGSGSG
Sbjct: 1 MASIKSLAIVVCLLLSFSAILSEGRVARKDLGIDLGGVGVGLGTGIGLGIGGSGSGSGSG 60
Query: 61 SGSGSGSGSSSASSSHSSSSSSGSDAGSEAGSY--------AGSGSGRNRNGGS------ 120
SGSGSGSGSSS+SSS+SSSSSSGS AGSEAGSY AGSGSG NRNGGS
Sbjct: 61 SGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYGSGY 120
Query: 121 --GSGRG-----NGEGYGEGHGYGNG 125
GSGRG NGEGYGEGHGYG G
Sbjct: 121 GGGSGRGGGSNDNGEGYGEGHGYGEG 146
BLAST of PI0018272 vs. NCBI nr
Match:
XP_038879815.1 (putative per-hexamer repeat protein 5 [Benincasa hispida])
HSP 1 Score: 146.7 bits (369), Expect = 1.3e-31
Identity = 116/151 (76.82%), Postives = 121/151 (80.13%), Query Frame = 0
Query: 1 MASVRAVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
MAS+RAV ++ FLLGVSVIVSE RVAR +LGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS
Sbjct: 1 MASIRAVTILAFLLGVSVIVSEGRVARMNLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
Query: 61 GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSY--------AGSGSGRNRNGGSGSGRGN- 120
GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSY AGSGSGRNRNGGSGSG G+
Sbjct: 61 GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGSG 120
Query: 121 ---------------GEGYGEGHGYGNGGEN 128
G GYGEGHGYGNGGEN
Sbjct: 121 YGAGSGRGSGEGYGEGHGYGEGHGYGNGGEN 151
BLAST of PI0018272 vs. NCBI nr
Match:
XP_022921884.1 (glycine-rich cell wall structural protein 2-like [Cucurbita moschata] >KAG6589744.1 hypothetical protein SDJN03_15167, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 144.1 bits (362), Expect = 8.5e-31
Identity = 113/147 (76.87%), Postives = 121/147 (82.31%), Query Frame = 0
Query: 1 MASVRAVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
MAS+RAV+++ LL +SVIVSESRVAR DLGLDLGGVG+G+GTGVGLGLGGSGSGSGSGS
Sbjct: 1 MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60
Query: 61 GSGSGSGSSSASSSHSSSSSSGSDAGSE----AGSYAGSGSGRNRNGGSGSGRGN----- 120
GSGSGSGSSSASSSHSSSSSSGSDAGSE AGSYAGSGSGRNRNGGSGSG G+
Sbjct: 61 GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSGSGRNRNGGSGSGSGSGSGYG 120
Query: 121 -----------GEGYGEGHGYGNGGEN 128
GEGYGEGHGYGN GEN
Sbjct: 121 AGSGRGSGSGGGEGYGEGHGYGNDGEN 147
BLAST of PI0018272 vs. NCBI nr
Match:
XP_008443812.1 (PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo])
HSP 1 Score: 138.7 bits (348), Expect = 3.6e-29
Identity = 112/144 (77.78%), Postives = 114/144 (79.17%), Query Frame = 0
Query: 1 MASVRAVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
MAS+R VAVVTFLLGVSVIVSESRVARKDLGLDLGG+GLGVGTGVGLGL GSGS
Sbjct: 1 MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGMGLGVGTGVGLGL------DGSGS 60
Query: 61 GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSY--------AGSGSGRNRNGGSGSGR--- 120
G GSG GSSSASSSHSSSSSSGSDAGSEAGSY AGSGSGRNRNGGSGSG
Sbjct: 61 GFGSGPGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTG 120
Query: 121 ------GNGEGYGEGHGYGNGGEN 128
G G GYGEGHGYGNGGEN
Sbjct: 121 NGGEGYGEGHGYGEGHGYGNGGEN 138
BLAST of PI0018272 vs. NCBI nr
Match:
XP_011656035.1 (glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN65266.1 hypothetical protein Csa_019849 [Cucumis sativus])
HSP 1 Score: 134.8 bits (338), Expect = 5.2e-28
Identity = 107/130 (82.31%), Postives = 110/130 (84.62%), Query Frame = 0
Query: 1 MASVRAVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
MAS+R+VAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTG+GLGLG GSGSGS
Sbjct: 1 MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLG----GSGSGS 60
Query: 61 GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSGSGRNRNG--GSGSGRGN-GEGYGE 120
GSGSGSGSSSAS SHS S AGSY GSGSGRNRNG GSGSGRGN GEGYGE
Sbjct: 61 GSGSGSGSSSASLSHS----------SYAGSYVGSGSGRNRNGGSGSGSGRGNGGEGYGE 116
Query: 121 GHGYGNGGEN 128
GHGYGNGGEN
Sbjct: 121 GHGYGNGGEN 116
BLAST of PI0018272 vs. NCBI nr
Match:
XP_022921883.1 (putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita moschata])
HSP 1 Score: 120.9 bits (302), Expect = 7.8e-24
Identity = 101/142 (71.13%), Postives = 113/142 (79.58%), Query Frame = 0
Query: 1 MASVRAVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
MAS+ ++ VV FLL SVI+S++RVARKDLGLDLGG+G+G+GTG+GLGLGGSGSGSGSGS
Sbjct: 1 MASINSLIVVCFLLSFSVILSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSGS 60
Query: 61 GSGSGSG--SSSASSSHSSSSSSGSDAGSEAGSY----AGSGSGRNRNGGS--------- 120
GSGSGSG SSS+SSS+SSSS SGS AGSEAGSY AGSGSG NRNGGS
Sbjct: 61 GSGSGSGSSSSSSSSSYSSSSGSGSGAGSEAGSYAGSRAGSGSGPNRNGGSGSGSGYGGG 120
Query: 121 ---GSGRGNGEGYGEGHGYGNG 125
GSG G GEGYGEGHGYG G
Sbjct: 121 SGRGSGNGGGEGYGEGHGYGEG 142
BLAST of PI0018272 vs. TAIR 10
Match:
AT4G30460.1 (glycine-rich protein )
HSP 1 Score: 94.7 bits (234), Expect = 5.5e-20
Identity = 82/123 (66.67%), Postives = 96/123 (78.05%), Query Frame = 0
Query: 6 AVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGSGSGSG 65
++ ++T +L SV+VSESRVARKDLGLDLGG+G G+G G+G+G GGSGSG+G+GSGSG G
Sbjct: 9 SLILITLILATSVLVSESRVARKDLGLDLGGIGAGIGIGIGIGGGGSGSGAGAGSGSGGG 68
Query: 66 SGSSSASSSHSSSSSS---GSDAGSEAGSYAGSGSGRNRNGGSGSGRGNGEGYGEGHGYG 125
SSS+SSS SSSSSS G DAGSEAGSYAGS +G G SGSGRG G G G GHG G
Sbjct: 69 GSSSSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGGGGGHGGG 128
BLAST of PI0018272 vs. TAIR 10
Match:
AT4G30450.1 (glycine-rich protein )
HSP 1 Score: 69.3 bits (168), Expect = 2.5e-12
Identity = 64/101 (63.37%), Postives = 80/101 (79.21%), Query Frame = 0
Query: 12 FLLGVSVI-----VSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGSGSGSGS 71
FLLG+ VI ++ESR+ARKDLG+DLGG+G+G+G G+G+GLGG GSGSG+G+GSGSGS
Sbjct: 8 FLLGLVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGG-GSGSGAGAGSGSGS 67
Query: 72 GSSSASSSHSSSSSSGSDAGSEAGSYAGSGSGRNRNGGSGS 108
GS S+SSS SSSSSS S +G AGS AGS +G GSG+
Sbjct: 68 GSRSSSSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGSGSGN 107
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1E1T0 | 4.1e-31 | 76.87 | glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 G... | [more] |
A0A1S3B8Y8 | 1.7e-29 | 77.78 | putative glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=... | [more] |
A0A0A0LZ57 | 2.5e-28 | 82.31 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G287000 PE=4 SV=1 | [more] |
A0A6J1E521 | 3.8e-24 | 71.13 | putative glycine-rich cell wall structural protein 1 isoform X3 OS=Cucurbita mos... | [more] |
A0A0A0LTK9 | 1.1e-23 | 70.55 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278500 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
XP_038879815.1 | 1.3e-31 | 76.82 | putative per-hexamer repeat protein 5 [Benincasa hispida] | [more] |
XP_022921884.1 | 8.5e-31 | 76.87 | glycine-rich cell wall structural protein 2-like [Cucurbita moschata] >KAG658974... | [more] |
XP_008443812.1 | 3.6e-29 | 77.78 | PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo] | [more] |
XP_011656035.1 | 5.2e-28 | 82.31 | glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN65266.1 hypoth... | [more] |
XP_022921883.1 | 7.8e-24 | 71.13 | putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita mosch... | [more] |