PI0018272 (gene) Melon (PI 482460) v1

Overview
NamePI0018272
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
Descriptionglycine-rich cell wall structural protein 2-like
Locationchr02: 21028766 .. 21029459 (-)
RNA-Seq ExpressionPI0018272
SyntenyPI0018272
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAAAACAAAGCATTTCATTACTCTCAAATTGTAGTTCCTGTTAAAACCATCTTCAATTTTGGTTCAATTACCAATCACACAAATATGGCTTCCGTTAGGGCTGTTGCCGTTGTCACTTTCCTACTTGGCGTGTCCGTCATTGTATCAGAAAGCCGTGTGGCTAGAAAAGACTTGGGCCTCGACCTTGGCGGAGTGGGCCTTGGTGTTGGCACGGGAGTGGGCTTGGGCTTAGGTGGAAGTGGTTCGGGTTCTGGATCTGGCTCCGGGTCTGGATCTGGGTCTGGGTCCAGTTCTGCTTCCTCATCACACTCCTCAAGCTCAAGCTCTGGCTCCGACGCTGGGTCCGAAGCCGGTTCATACGCCGGATCTGGTTCAGGCAGAAACAGGAACGGTGGATCGGGTTCAGGGAGGGGAAACGGTGAAGGATACGGCGAGGGGCATGGTTATGGCAACGGCGGCGAAAACTGAGATCAAACTTAAACTATAATTAATGATAATATGAAATTAATTAAGGATGATAATCGTCTTTTCCTTTTGCAAATAGATTAATAAAAGCTATAGATGATGAATCCTTAATTGTATTCCTGTTTTGTTCTTCTAGTCTAGTTTATATATATATATGTATATGAAATTTGAATAAAAATGTTGTTCCTATTTAGTGTTAATGAAATTATGGGTAATTATAATATACA

mRNA sequence

CAAAAAACAAAGCATTTCATTACTCTCAAATTGTAGTTCCTGTTAAAACCATCTTCAATTTTGGTTCAATTACCAATCACACAAATATGGCTTCCGTTAGGGCTGTTGCCGTTGTCACTTTCCTACTTGGCGTGTCCGTCATTGTATCAGAAAGCCGTGTGGCTAGAAAAGACTTGGGCCTCGACCTTGGCGGAGTGGGCCTTGGTGTTGGCACGGGAGTGGGCTTGGGCTTAGGTGGAAGTGGTTCGGGTTCTGGATCTGGCTCCGGGTCTGGATCTGGGTCTGGGTCCAGTTCTGCTTCCTCATCACACTCCTCAAGCTCAAGCTCTGGCTCCGACGCTGGGTCCGAAGCCGGTTCATACGCCGGATCTGGTTCAGGCAGAAACAGGAACGGTGGATCGGGTTCAGGGAGGGGAAACGGTGAAGGATACGGCGAGGGGCATGGTTATGGCAACGGCGGCGAAAACTGAGATCAAACTTAAACTATAATTAATGATAATATGAAATTAATTAAGGATGATAATCGTCTTTTCCTTTTGCAAATAGATTAATAAAAGCTATAGATGATGAATCCTTAATTGTATTCCTGTTTTGTTCTTCTAGTCTAGTTTATATATATATATGTATATGAAATTTGAATAAAAATGTTGTTCCTATTTAGTGTTAATGAAATTATGGGTAATTATAATATACA

Coding sequence (CDS)

ATGGCTTCCGTTAGGGCTGTTGCCGTTGTCACTTTCCTACTTGGCGTGTCCGTCATTGTATCAGAAAGCCGTGTGGCTAGAAAAGACTTGGGCCTCGACCTTGGCGGAGTGGGCCTTGGTGTTGGCACGGGAGTGGGCTTGGGCTTAGGTGGAAGTGGTTCGGGTTCTGGATCTGGCTCCGGGTCTGGATCTGGGTCTGGGTCCAGTTCTGCTTCCTCATCACACTCCTCAAGCTCAAGCTCTGGCTCCGACGCTGGGTCCGAAGCCGGTTCATACGCCGGATCTGGTTCAGGCAGAAACAGGAACGGTGGATCGGGTTCAGGGAGGGGAAACGGTGAAGGATACGGCGAGGGGCATGGTTATGGCAACGGCGGCGAAAACTGA

Protein sequence

MASVRAVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGSGSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSGSGRNRNGGSGSGRGNGEGYGEGHGYGNGGEN
Homology
BLAST of PI0018272 vs. ExPASy TrEMBL
Match: A0A6J1E1T0 (glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111430015 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 4.1e-31
Identity = 113/147 (76.87%), Postives = 121/147 (82.31%), Query Frame = 0

Query: 1   MASVRAVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
           MAS+RAV+++  LL +SVIVSESRVAR DLGLDLGGVG+G+GTGVGLGLGGSGSGSGSGS
Sbjct: 1   MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60

Query: 61  GSGSGSGSSSASSSHSSSSSSGSDAGSE----AGSYAGSGSGRNRNGGSGSGRGN----- 120
           GSGSGSGSSSASSSHSSSSSSGSDAGSE    AGSYAGSGSGRNRNGGSGSG G+     
Sbjct: 61  GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSGSGRNRNGGSGSGSGSGSGYG 120

Query: 121 -----------GEGYGEGHGYGNGGEN 128
                      GEGYGEGHGYGN GEN
Sbjct: 121 AGSGRGSGSGGGEGYGEGHGYGNDGEN 147

BLAST of PI0018272 vs. ExPASy TrEMBL
Match: A0A1S3B8Y8 (putative glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=LOC103487315 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.7e-29
Identity = 112/144 (77.78%), Postives = 114/144 (79.17%), Query Frame = 0

Query: 1   MASVRAVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
           MAS+R VAVVTFLLGVSVIVSESRVARKDLGLDLGG+GLGVGTGVGLGL       GSGS
Sbjct: 1   MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGMGLGVGTGVGLGL------DGSGS 60

Query: 61  GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSY--------AGSGSGRNRNGGSGSGR--- 120
           G GSG GSSSASSSHSSSSSSGSDAGSEAGSY        AGSGSGRNRNGGSGSG    
Sbjct: 61  GFGSGPGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTG 120

Query: 121 ------GNGEGYGEGHGYGNGGEN 128
                 G G GYGEGHGYGNGGEN
Sbjct: 121 NGGEGYGEGHGYGEGHGYGNGGEN 138

BLAST of PI0018272 vs. ExPASy TrEMBL
Match: A0A0A0LZ57 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G287000 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.5e-28
Identity = 107/130 (82.31%), Postives = 110/130 (84.62%), Query Frame = 0

Query: 1   MASVRAVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
           MAS+R+VAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTG+GLGLG    GSGSGS
Sbjct: 1   MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLG----GSGSGS 60

Query: 61  GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSGSGRNRNG--GSGSGRGN-GEGYGE 120
           GSGSGSGSSSAS SHS          S AGSY GSGSGRNRNG  GSGSGRGN GEGYGE
Sbjct: 61  GSGSGSGSSSASLSHS----------SYAGSYVGSGSGRNRNGGSGSGSGRGNGGEGYGE 116

Query: 121 GHGYGNGGEN 128
           GHGYGNGGEN
Sbjct: 121 GHGYGNGGEN 116

BLAST of PI0018272 vs. ExPASy TrEMBL
Match: A0A6J1E521 (putative glycine-rich cell wall structural protein 1 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111430014 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.8e-24
Identity = 101/142 (71.13%), Postives = 113/142 (79.58%), Query Frame = 0

Query: 1   MASVRAVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
           MAS+ ++ VV FLL  SVI+S++RVARKDLGLDLGG+G+G+GTG+GLGLGGSGSGSGSGS
Sbjct: 1   MASINSLIVVCFLLSFSVILSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSGS 60

Query: 61  GSGSGSG--SSSASSSHSSSSSSGSDAGSEAGSY----AGSGSGRNRNGGS--------- 120
           GSGSGSG  SSS+SSS+SSSS SGS AGSEAGSY    AGSGSG NRNGGS         
Sbjct: 61  GSGSGSGSSSSSSSSSYSSSSGSGSGAGSEAGSYAGSRAGSGSGPNRNGGSGSGSGYGGG 120

Query: 121 ---GSGRGNGEGYGEGHGYGNG 125
              GSG G GEGYGEGHGYG G
Sbjct: 121 SGRGSGNGGGEGYGEGHGYGEG 142

BLAST of PI0018272 vs. ExPASy TrEMBL
Match: A0A0A0LTK9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278500 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.1e-23
Identity = 103/146 (70.55%), Postives = 115/146 (78.77%), Query Frame = 0

Query: 1   MASVRAVA-VVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSG 60
           MAS++++A VV  LL  S I+SE RVARKDLG+DLGGVG+G+GTG+GLG+GGSGSGSGSG
Sbjct: 1   MASIKSLAIVVCLLLSFSAILSEGRVARKDLGIDLGGVGVGLGTGIGLGIGGSGSGSGSG 60

Query: 61  SGSGSGSGSSSASSSHSSSSSSGSDAGSEAGSY--------AGSGSGRNRNGGS------ 120
           SGSGSGSGSSS+SSS+SSSSSSGS AGSEAGSY        AGSGSG NRNGGS      
Sbjct: 61  SGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYGSGY 120

Query: 121 --GSGRG-----NGEGYGEGHGYGNG 125
             GSGRG     NGEGYGEGHGYG G
Sbjct: 121 GGGSGRGGGSNDNGEGYGEGHGYGEG 146

BLAST of PI0018272 vs. NCBI nr
Match: XP_038879815.1 (putative per-hexamer repeat protein 5 [Benincasa hispida])

HSP 1 Score: 146.7 bits (369), Expect = 1.3e-31
Identity = 116/151 (76.82%), Postives = 121/151 (80.13%), Query Frame = 0

Query: 1   MASVRAVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
           MAS+RAV ++ FLLGVSVIVSE RVAR +LGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS
Sbjct: 1   MASIRAVTILAFLLGVSVIVSEGRVARMNLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60

Query: 61  GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSY--------AGSGSGRNRNGGSGSGRGN- 120
           GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSY        AGSGSGRNRNGGSGSG G+ 
Sbjct: 61  GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGSG 120

Query: 121 ---------------GEGYGEGHGYGNGGEN 128
                          G GYGEGHGYGNGGEN
Sbjct: 121 YGAGSGRGSGEGYGEGHGYGEGHGYGNGGEN 151

BLAST of PI0018272 vs. NCBI nr
Match: XP_022921884.1 (glycine-rich cell wall structural protein 2-like [Cucurbita moschata] >KAG6589744.1 hypothetical protein SDJN03_15167, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144.1 bits (362), Expect = 8.5e-31
Identity = 113/147 (76.87%), Postives = 121/147 (82.31%), Query Frame = 0

Query: 1   MASVRAVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
           MAS+RAV+++  LL +SVIVSESRVAR DLGLDLGGVG+G+GTGVGLGLGGSGSGSGSGS
Sbjct: 1   MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60

Query: 61  GSGSGSGSSSASSSHSSSSSSGSDAGSE----AGSYAGSGSGRNRNGGSGSGRGN----- 120
           GSGSGSGSSSASSSHSSSSSSGSDAGSE    AGSYAGSGSGRNRNGGSGSG G+     
Sbjct: 61  GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSGSGRNRNGGSGSGSGSGSGYG 120

Query: 121 -----------GEGYGEGHGYGNGGEN 128
                      GEGYGEGHGYGN GEN
Sbjct: 121 AGSGRGSGSGGGEGYGEGHGYGNDGEN 147

BLAST of PI0018272 vs. NCBI nr
Match: XP_008443812.1 (PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo])

HSP 1 Score: 138.7 bits (348), Expect = 3.6e-29
Identity = 112/144 (77.78%), Postives = 114/144 (79.17%), Query Frame = 0

Query: 1   MASVRAVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
           MAS+R VAVVTFLLGVSVIVSESRVARKDLGLDLGG+GLGVGTGVGLGL       GSGS
Sbjct: 1   MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGMGLGVGTGVGLGL------DGSGS 60

Query: 61  GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSY--------AGSGSGRNRNGGSGSGR--- 120
           G GSG GSSSASSSHSSSSSSGSDAGSEAGSY        AGSGSGRNRNGGSGSG    
Sbjct: 61  GFGSGPGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTG 120

Query: 121 ------GNGEGYGEGHGYGNGGEN 128
                 G G GYGEGHGYGNGGEN
Sbjct: 121 NGGEGYGEGHGYGEGHGYGNGGEN 138

BLAST of PI0018272 vs. NCBI nr
Match: XP_011656035.1 (glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN65266.1 hypothetical protein Csa_019849 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 5.2e-28
Identity = 107/130 (82.31%), Postives = 110/130 (84.62%), Query Frame = 0

Query: 1   MASVRAVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
           MAS+R+VAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTG+GLGLG    GSGSGS
Sbjct: 1   MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLG----GSGSGS 60

Query: 61  GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSGSGRNRNG--GSGSGRGN-GEGYGE 120
           GSGSGSGSSSAS SHS          S AGSY GSGSGRNRNG  GSGSGRGN GEGYGE
Sbjct: 61  GSGSGSGSSSASLSHS----------SYAGSYVGSGSGRNRNGGSGSGSGRGNGGEGYGE 116

Query: 121 GHGYGNGGEN 128
           GHGYGNGGEN
Sbjct: 121 GHGYGNGGEN 116

BLAST of PI0018272 vs. NCBI nr
Match: XP_022921883.1 (putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita moschata])

HSP 1 Score: 120.9 bits (302), Expect = 7.8e-24
Identity = 101/142 (71.13%), Postives = 113/142 (79.58%), Query Frame = 0

Query: 1   MASVRAVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60
           MAS+ ++ VV FLL  SVI+S++RVARKDLGLDLGG+G+G+GTG+GLGLGGSGSGSGSGS
Sbjct: 1   MASINSLIVVCFLLSFSVILSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSGS 60

Query: 61  GSGSGSG--SSSASSSHSSSSSSGSDAGSEAGSY----AGSGSGRNRNGGS--------- 120
           GSGSGSG  SSS+SSS+SSSS SGS AGSEAGSY    AGSGSG NRNGGS         
Sbjct: 61  GSGSGSGSSSSSSSSSYSSSSGSGSGAGSEAGSYAGSRAGSGSGPNRNGGSGSGSGYGGG 120

Query: 121 ---GSGRGNGEGYGEGHGYGNG 125
              GSG G GEGYGEGHGYG G
Sbjct: 121 SGRGSGNGGGEGYGEGHGYGEG 142

BLAST of PI0018272 vs. TAIR 10
Match: AT4G30460.1 (glycine-rich protein )

HSP 1 Score: 94.7 bits (234), Expect = 5.5e-20
Identity = 82/123 (66.67%), Postives = 96/123 (78.05%), Query Frame = 0

Query: 6   AVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGSGSGSG 65
           ++ ++T +L  SV+VSESRVARKDLGLDLGG+G G+G G+G+G GGSGSG+G+GSGSG G
Sbjct: 9   SLILITLILATSVLVSESRVARKDLGLDLGGIGAGIGIGIGIGGGGSGSGAGAGSGSGGG 68

Query: 66  SGSSSASSSHSSSSSS---GSDAGSEAGSYAGSGSGRNRNGGSGSGRGNGEGYGEGHGYG 125
             SSS+SSS SSSSSS   G DAGSEAGSYAGS +G    G SGSGRG G G G GHG G
Sbjct: 69  GSSSSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGGGGGHGGG 128

BLAST of PI0018272 vs. TAIR 10
Match: AT4G30450.1 (glycine-rich protein )

HSP 1 Score: 69.3 bits (168), Expect = 2.5e-12
Identity = 64/101 (63.37%), Postives = 80/101 (79.21%), Query Frame = 0

Query: 12  FLLGVSVI-----VSESRVARKDLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGSGSGSGS 71
           FLLG+ VI     ++ESR+ARKDLG+DLGG+G+G+G G+G+GLGG GSGSG+G+GSGSGS
Sbjct: 8   FLLGLVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGG-GSGSGAGAGSGSGS 67

Query: 72  GSSSASSSHSSSSSSGSDAGSEAGSYAGSGSGRNRNGGSGS 108
           GS S+SSS SSSSSS S +G  AGS AGS +G     GSG+
Sbjct: 68  GSRSSSSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGSGSGN 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1E1T04.1e-3176.87glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 G... [more]
A0A1S3B8Y81.7e-2977.78putative glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=... [more]
A0A0A0LZ572.5e-2882.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G287000 PE=4 SV=1[more]
A0A6J1E5213.8e-2471.13putative glycine-rich cell wall structural protein 1 isoform X3 OS=Cucurbita mos... [more]
A0A0A0LTK91.1e-2370.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278500 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_038879815.11.3e-3176.82putative per-hexamer repeat protein 5 [Benincasa hispida][more]
XP_022921884.18.5e-3176.87glycine-rich cell wall structural protein 2-like [Cucurbita moschata] >KAG658974... [more]
XP_008443812.13.6e-2977.78PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo][more]
XP_011656035.15.2e-2882.31glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN65266.1 hypoth... [more]
XP_022921883.17.8e-2471.13putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita mosch... [more]
Match NameE-valueIdentityDescription
AT4G30460.15.5e-2066.67glycine-rich protein [more]
AT4G30450.12.5e-1263.37glycine-rich protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..127
NoneNo IPR availablePANTHERPTHR38934HYPHALLY REGULATED CELL WALL PROTEIN 1coord: 1..126
NoneNo IPR availablePANTHERPTHR38934:SF13GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1-RELATEDcoord: 1..126

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0018272.1PI0018272.1mRNA