Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGCAGGATACGATGGATTTCCCGCTTATGACGGGAATGATATGGAGTTCCTCACGATGTACAGTCAGGGACTGGACATATCACCTGACAGCATCATGGGCACACGACCCGGTCGATTATCTGAGGGTAGGGCTGGTTCAAGCGGTTCGAAGAGGAAACGTGGAGGGCAGGCGTTCGAGATGGCAGAAATTATTCGCAGTACCATGGAATATGCGAATGACCAGCTAAAGGCCATTGCAGAATGGCCCAAAGAACAACGCTCAGATGCAAACGTGACACGTGCGAAAGTCGTTAGACAACTGCAGGGAATCTTGGAGCTGAACAGACTAAACATGGTTCGTTGTATGCGTATAATGATGCGCAATGTGGATGACATGGAAGCATTTCTGGACATCCCAAACGAGCTTAAATTGGATTACTGCACGATCATTCTCCAAAATAACGCTTGA
mRNA sequence
ATGCCTGCAGGATACGATGGATTTCCCGCTTATGACGGGAATGATATGGAGTTCCTCACGATGTACAGTCAGGGACTGGACATATCACCTGACAGCATCATGGGCACACGACCCGGTCGATTATCTGAGGGTAGGGCTGGTTCAAGCGGTTCGAAGAGGAAACGTGGAGGGCAGGCGTTCGAGATGGCAGAAATTATTCGCAGTACCATGGAATATGCGAATGACCAGCTAAAGGCCATTGCAGAATGGCCCAAAGAACAACGCTCAGATGCAAACGTGACACGTGCGAAAGTCGTTAGACAACTGCAGGGAATCTTGGAGCTGAACAGACTAAACATGGTTCGTTGTATGCGTATAATGATGCGCAATGTGGATGACATGGAAGCATTTCTGGACATCCCAAACGAGCTTAAATTGGATTACTGCACGATCATTCTCCAAAATAACGCTTGA
Coding sequence (CDS)
ATGCCTGCAGGATACGATGGATTTCCCGCTTATGACGGGAATGATATGGAGTTCCTCACGATGTACAGTCAGGGACTGGACATATCACCTGACAGCATCATGGGCACACGACCCGGTCGATTATCTGAGGGTAGGGCTGGTTCAAGCGGTTCGAAGAGGAAACGTGGAGGGCAGGCGTTCGAGATGGCAGAAATTATTCGCAGTACCATGGAATATGCGAATGACCAGCTAAAGGCCATTGCAGAATGGCCCAAAGAACAACGCTCAGATGCAAACGTGACACGTGCGAAAGTCGTTAGACAACTGCAGGGAATCTTGGAGCTGAACAGACTAAACATGGTTCGTTGTATGCGTATAATGATGCGCAATGTGGATGACATGGAAGCATTTCTGGACATCCCAAACGAGCTTAAATTGGATTACTGCACGATCATTCTCCAAAATAACGCTTGA
Protein sequence
MPAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFEMAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQLQGILELNRLNMVRCMRIMMRNVDDMEAFLDIPNELKLDYCTIILQNNA
Homology
BLAST of PI0018112 vs. ExPASy TrEMBL
Match:
A0A5A7V469 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00340 PE=4 SV=1)
HSP 1 Score: 188.0 bits (476), Expect = 3.0e-44
Identity = 98/149 (65.77%), Postives = 116/149 (77.85%), Query Frame = 0
Query: 2 PAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFE 61
P GY+GF A DGNDME MYSQG+D+ D IMGTRP R +EGR GSSGSKRK+GGQA E
Sbjct: 16 PEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVE 75
Query: 62 MAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQLQGILELNRLNMVRCMRIMM 121
EIIR+ ME++ND+LKAI EW QR DA+ +VVRQLQ I EL+R + VR M+I+M
Sbjct: 76 TMEIIRNVMEHSNDRLKAIVEWLNVQRQDASARLVEVVRQLQRIPELSRYDRVRSMQILM 135
Query: 122 RNVDDMEAFLDIPNELKLDYCTIILQNNA 151
NVDDM+AFLDI +ELKLDYCTII Q+NA
Sbjct: 136 CNVDDMKAFLDILDELKLDYCTIIFQDNA 164
BLAST of PI0018112 vs. ExPASy TrEMBL
Match:
A0A5A7TYQ6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G002060 PE=4 SV=1)
HSP 1 Score: 165.6 bits (418), Expect = 1.6e-37
Identity = 85/148 (57.43%), Postives = 108/148 (72.97%), Query Frame = 0
Query: 2 PAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFE 61
PAGYD F A D +D +FL MYS GL++SPD +M TR R+SE R SSGSKRKR G A +
Sbjct: 125 PAGYDAFAADDVSDTDFLPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRSGHATD 184
Query: 62 MAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQLQGILELNRLNMVRCMRIMM 121
+I+R+ MEY N+QL IAEWP QR DA TR ++VRQL+ I EL ++ R MRI+M
Sbjct: 185 SGDIVRTAMEYGNEQLHRIAEWPILQRQDATETRQEIVRQLEVIPELTLMDRCRLMRIIM 244
Query: 122 RNVDDMEAFLDIPNELKLDYCTIILQNN 150
RNVDDM+AFL++P+ +K YC+IILQ N
Sbjct: 245 RNVDDMKAFLEVPDNMKYPYCSIILQEN 272
BLAST of PI0018112 vs. ExPASy TrEMBL
Match:
A0A5A7TDD6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00890 PE=4 SV=1)
HSP 1 Score: 161.0 bits (406), Expect = 3.9e-36
Identity = 84/148 (56.76%), Postives = 106/148 (71.62%), Query Frame = 0
Query: 2 PAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFE 61
PAGYD F A DM+F MY+QGL++S D +MGTR + E R SSGSKRKR G + +
Sbjct: 176 PAGYDAFLADAAPDMDFPPMYNQGLNMSSDDLMGTRTAWVREHRNVSSGSKRKRAGHSAD 235
Query: 62 MAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQLQGILELNRLNMVRCMRIMM 121
+IIR+ +EY N+QL IAEWP QR DA+ TR +VVRQL+ I EL ++ R MRI+M
Sbjct: 236 SGDIIRTLIEYENEQLNHIAEWPALQRQDASETRQEVVRQLEAIPELTLMDRCRLMRILM 295
Query: 122 RNVDDMEAFLDIPNELKLDYCTIILQNN 150
RNVDDM+AFLD+PN +K YC+IILQ N
Sbjct: 296 RNVDDMKAFLDVPNNMKYPYCSIILQEN 323
BLAST of PI0018112 vs. ExPASy TrEMBL
Match:
A0A5D3E474 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001250 PE=4 SV=1)
HSP 1 Score: 155.6 bits (392), Expect = 1.6e-34
Identity = 80/148 (54.05%), Postives = 105/148 (70.95%), Query Frame = 0
Query: 2 PAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFE 61
PAGYD FPA D F +MYS GL++SPD +M TR R+SE R SSGSKRKR G A +
Sbjct: 153 PAGYDAFPADATPDTNFPSMYSSGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATD 212
Query: 62 MAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQLQGILELNRLNMVRCMRIMM 121
+I+R+ +EY N+QL IAEWP QR DA+ TR ++VRQL+ I +L ++ R M I+M
Sbjct: 213 SGDIVRTAIEYGNEQLHRIAEWPILQRQDASQTRQEIVRQLEAIPKLTLMDRCRLMHILM 272
Query: 122 RNVDDMEAFLDIPNELKLDYCTIILQNN 150
RNVDDM+AFL++ + +K YC+IILQ N
Sbjct: 273 RNVDDMKAFLEVSDNMKYPYCSIILQEN 300
BLAST of PI0018112 vs. ExPASy TrEMBL
Match:
A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)
HSP 1 Score: 154.5 bits (389), Expect = 3.6e-34
Identity = 80/148 (54.05%), Postives = 104/148 (70.27%), Query Frame = 0
Query: 2 PAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFE 61
P GYD F A D +F MYS GL++SPD +M TR R+SE R SSGSKRKR G A +
Sbjct: 496 PPGYDAFAADAVPDTDFSPMYSLGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATD 555
Query: 62 MAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQLQGILELNRLNMVRCMRIMM 121
+I+R+ +EY N+QL IAEWP QR DA TR ++V+QL+ I EL ++ R MRI+M
Sbjct: 556 SGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVQQLEAIPELTLMDRCRLMRILM 615
Query: 122 RNVDDMEAFLDIPNELKLDYCTIILQNN 150
RNVDDM+AFL++P+ +K YC+IILQ N
Sbjct: 616 RNVDDMKAFLEVPDNMKYPYCSIILQEN 643
BLAST of PI0018112 vs. NCBI nr
Match:
KAA0060529.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 188.0 bits (476), Expect = 6.1e-44
Identity = 98/149 (65.77%), Postives = 116/149 (77.85%), Query Frame = 0
Query: 2 PAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFE 61
P GY+GF A DGNDME MYSQG+D+ D IMGTRP R +EGR GSSGSKRK+GGQA E
Sbjct: 16 PEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVE 75
Query: 62 MAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQLQGILELNRLNMVRCMRIMM 121
EIIR+ ME++ND+LKAI EW QR DA+ +VVRQLQ I EL+R + VR M+I+M
Sbjct: 76 TMEIIRNVMEHSNDRLKAIVEWLNVQRQDASARLVEVVRQLQRIPELSRYDRVRSMQILM 135
Query: 122 RNVDDMEAFLDIPNELKLDYCTIILQNNA 151
NVDDM+AFLDI +ELKLDYCTII Q+NA
Sbjct: 136 CNVDDMKAFLDILDELKLDYCTIIFQDNA 164
BLAST of PI0018112 vs. NCBI nr
Match:
KAA0048280.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 165.6 bits (418), Expect = 3.2e-37
Identity = 85/148 (57.43%), Postives = 108/148 (72.97%), Query Frame = 0
Query: 2 PAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFE 61
PAGYD F A D +D +FL MYS GL++SPD +M TR R+SE R SSGSKRKR G A +
Sbjct: 125 PAGYDAFAADDVSDTDFLPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRSGHATD 184
Query: 62 MAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQLQGILELNRLNMVRCMRIMM 121
+I+R+ MEY N+QL IAEWP QR DA TR ++VRQL+ I EL ++ R MRI+M
Sbjct: 185 SGDIVRTAMEYGNEQLHRIAEWPILQRQDATETRQEIVRQLEVIPELTLMDRCRLMRIIM 244
Query: 122 RNVDDMEAFLDIPNELKLDYCTIILQNN 150
RNVDDM+AFL++P+ +K YC+IILQ N
Sbjct: 245 RNVDDMKAFLEVPDNMKYPYCSIILQEN 272
BLAST of PI0018112 vs. NCBI nr
Match:
KAA0041444.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24318.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 161.0 bits (406), Expect = 8.0e-36
Identity = 84/148 (56.76%), Postives = 106/148 (71.62%), Query Frame = 0
Query: 2 PAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFE 61
PAGYD F A DM+F MY+QGL++S D +MGTR + E R SSGSKRKR G + +
Sbjct: 176 PAGYDAFLADAAPDMDFPPMYNQGLNMSSDDLMGTRTAWVREHRNVSSGSKRKRAGHSAD 235
Query: 62 MAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQLQGILELNRLNMVRCMRIMM 121
+IIR+ +EY N+QL IAEWP QR DA+ TR +VVRQL+ I EL ++ R MRI+M
Sbjct: 236 SGDIIRTLIEYENEQLNHIAEWPALQRQDASETRQEVVRQLEAIPELTLMDRCRLMRILM 295
Query: 122 RNVDDMEAFLDIPNELKLDYCTIILQNN 150
RNVDDM+AFLD+PN +K YC+IILQ N
Sbjct: 296 RNVDDMKAFLDVPNNMKYPYCSIILQEN 323
BLAST of PI0018112 vs. NCBI nr
Match:
KAA0035629.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK30913.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 155.6 bits (392), Expect = 3.4e-34
Identity = 80/148 (54.05%), Postives = 105/148 (70.95%), Query Frame = 0
Query: 2 PAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFE 61
PAGYD FPA D F +MYS GL++SPD +M TR R+SE R SSGSKRKR G A +
Sbjct: 153 PAGYDAFPADATPDTNFPSMYSSGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATD 212
Query: 62 MAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQLQGILELNRLNMVRCMRIMM 121
+I+R+ +EY N+QL IAEWP QR DA+ TR ++VRQL+ I +L ++ R M I+M
Sbjct: 213 SGDIVRTAIEYGNEQLHRIAEWPILQRQDASQTRQEIVRQLEAIPKLTLMDRCRLMHILM 272
Query: 122 RNVDDMEAFLDIPNELKLDYCTIILQNN 150
RNVDDM+AFL++ + +K YC+IILQ N
Sbjct: 273 RNVDDMKAFLEVSDNMKYPYCSIILQEN 300
BLAST of PI0018112 vs. NCBI nr
Match:
KAA0065892.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 154.5 bits (389), Expect = 7.5e-34
Identity = 81/148 (54.73%), Postives = 104/148 (70.27%), Query Frame = 0
Query: 2 PAGYDGFPAYDGNDMEFLTMYSQGLDISPDSIMGTRPGRLSEGRAGSSGSKRKRGGQAFE 61
P GYD F A D +F MYS GL++SPD +M TR R+SE R SSGSKRKR G A +
Sbjct: 154 PPGYDAFAADVVPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATD 213
Query: 62 MAEIIRSTMEYANDQLKAIAEWPKEQRSDANVTRAKVVRQLQGILELNRLNMVRCMRIMM 121
+I+R+ +EY N+QL IAEWP QR DA TR ++VRQL+ I EL ++ R MRI+M
Sbjct: 214 SGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEVIPELTLMDRCRLMRILM 273
Query: 122 RNVDDMEAFLDIPNELKLDYCTIILQNN 150
RNVDDM+AFL++P+ +K YC+IILQ N
Sbjct: 274 RNVDDMKAFLEVPDNMKYPYCSIILQEN 301
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7V469 | 3.0e-44 | 65.77 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7TYQ6 | 1.6e-37 | 57.43 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7TDD6 | 3.9e-36 | 56.76 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3E474 | 1.6e-34 | 54.05 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7SWD8 | 3.6e-34 | 54.05 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
KAA0060529.1 | 6.1e-44 | 65.77 | retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon p... | [more] |
KAA0048280.1 | 3.2e-37 | 57.43 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0041444.1 | 8.0e-36 | 56.76 | retrotransposon protein [Cucumis melo var. makuwa] >TYK24318.1 retrotransposon p... | [more] |
KAA0035629.1 | 3.4e-34 | 54.05 | retrotransposon protein [Cucumis melo var. makuwa] >TYK30913.1 retrotransposon p... | [more] |
KAA0065892.1 | 7.5e-34 | 54.73 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |