PI0018015 (gene) Melon (PI 482460) v1

Overview


Name	PI0018015
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	HMG-Y-related protein A-like
Location	chr06: 15942050 .. 15944184 (-)
RNA-Seq Expression	PI0018015
Synteny	PI0018015

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAACAGCAGTAGTAGGTTCCTCTTTCTATCTCTAGCTGCTTTCTGGGTTACTCTTCTCCTTCTCTGTAGGCTTCAGGATAATAAAAGACCTTTCTTTTTTAGATTTTCAATGGCGACTCAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGGTACATTCCTTTCCTCTTTATCTCTTCCAGTTTCAGATACCCATCTACCAAAAATAATCATCTGTCCTTTTCTTCTCCTCTTAATTTCTTTTTTTTTTTACCTCTAATTTGTTGAATCTATTCTGGGTTTATGTGTTATGTCTTAATTTGTTCTTCAATTAGGGTTTCTTGTGATTTTTTTTCCTGATTTTTGTATCTTGTTTACTGAATTTCGTTTTTTTGTTTGATTTTTTGTTGTTGTTATGTTGTGATTTGGTGAACAGGGGAAAATCCTTTTTTTCTCCTTGTGTTTTCTTTCATTTCCTTCTCGAATCTGAGTGTCTTTTTTTTTTTTTGGAAAAAATATCGGAATAGGTCTTTTTTTTTTCTTTTTCATTGTCACTAAATTTTGATTGATTCAGCTGAGATTTCTCATTTCTCACTGCTGCTTCCTCTATTGTTTGTTTCTATTCTTCACTTCCATCATTCTTTAGAAGTGGTTTTGAGTTTTGAATTTTGTTTGAAATAGAAGAGATACATTTTTTTTTACTGAGATGTTAATGTTATAAAAAAATGAGAAGTGTTAAAAGATTTGAAGATGTTAGATTTGTTGTTAACTGTAAGTTAAGACGAAATCTTAAGTTAAAGTATGATTTGAAAATGTGTTTGATTTCAGATCTCTTTACTTCAAAGAGGTAACAAACCATACAAGTATATTAGAAATGTAATTTGTTTTGAATTCTCTTGAAATGCTGGGAAAGCAGAATTTTGATTCATTGGATATTAAGTTTTTCTTTAAAACTGCAATCATTGAAGTTGATAAAAGTGGATCAAGAAAATGAAAAGAGAAAGGTTTAATTGAAGAAACACCATTTTTTTTAAAAGGTGTTTTAAATAATGCAGATGATATTTAGGGCTATTGAAGCGTTGAATAGTGACAATGGCTCAAACAAGTCCACAATATCAAAGTACATTGAATCGACATATGGGAACTTGCCAACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCGAGTGGGGACCTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCTACGGCACCTCCGCGACGAGGCCGTGGCAGGCCTCCCAAATCGAAGAGCCCTCTTCCACCCAGTTCTGGGTTATCTCCACCAAAGCCAAGAGGCCGCCCGCCAAAGGACCCCAATGCACCTCCAAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCAAGAGGACGGCCAAGGAAATTCCCTCAGTCAGCAACCACACCAGCTCCTCCGGCACCGAGCGGGAGGCCCAGAGGTCGACCTCCTAAGGTGAAGGCTACATTGACGGAAGTTAGTGTTCAACAATAGATTGTTGCAGTGCAGTGTTAATTGGTAGTGCCTTGACTCTCTCTCTCTCACTCTCTTATTTGTCTCTGTTGCTGTGTGGGCAGTTTGTAGTTTTAGTGCTTAGTTTTAGTTTGATGTGGATGTGGGTGTAATTCATGTAAAATGTGGTGTAGTGGTTGTGAGGCTCTGTTGCTTTCTAATTTACAAGTGAACATTGACCTGTGCTAATCATAATTTCTTCAGTGTTTCAATCCTTCAAACATTTTTGATTGCTTCGAACATGACACTTCACATTGTCTACTCTTTTTCCAAATGTCGGAAGGTGAAGCAATTGAATCAGTTAAGGTGTGCATAAATAGTTATGAGTACTCATGGACATAGAAATAAAAAGGACCTTCAAAAGTCAGAACAAGAAGAGACAAAAGTCGATTGGTTGAATTACTTTTGTCAATGGAAACAAGTTGTTTGTTGGAATCGTACTAGTTGTACTTTTGAAGAGGGTTTGGAATTTAGACTCATCAAATAGTAAATGAGTTTAGATCTCATTTAACAGTTCTGTTTTGATGTAGTTTTAATTGGATAGATAGGGATTCATAGGACCATAGAGGTTTGGAAGATTTTG

mRNA sequence

GAACAGCAGTAGTAGGTTCCTCTTTCTATCTCTAGCTGCTTTCTGGGTTACTCTTCTCCTTCTCTGTAGGCTTCAGGATAATAAAAGACCTTTCTTTTTTAGATTTTCAATGGCGACTCAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGATGATATTTAGGGCTATTGAAGCGTTGAATAGTGACAATGGCTCAAACAAGTCCACAATATCAAAGTACATTGAATCGACATATGGGAACTTGCCAACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCGAGTGGGGACCTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCTACGGCACCTCCGCGACGAGGCCGTGGCAGGCCTCCCAAATCGAAGAGCCCTCTTCCACCCAGTTCTGGGTTATCTCCACCAAAGCCAAGAGGCCGCCCGCCAAAGGACCCCAATGCACCTCCAAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCAAGAGGACGGCCAAGGAAATTCCCTCAGTCAGCAACCACACCAGCTCCTCCGGCACCGAGCGGGAGGCCCAGAGGTCGACCTCCTAAGGTGAAGGCTACATTGACGGAAGTTAGTGTTCAACAATAGATTGTTGCAGTGCAGTGTTAATTGGTAGTGCCTTGACTCTCTCTCTCTCACTCTCTTATTTGTCTCTGTTGCTGTGTGGGCAGTTTGTAGTTTTAGTGCTTAGTTTTAGTTTGATGTGGATGTGGGTGTAATTCATGTAAAATGTGGTGTAGTGGTTGTGAGGCTCTGTTGCTTTCTAATTTACAAGTGAACATTGACCTGTGCTAATCATAATTTCTTCAGTGTTTCAATCCTTCAAACATTTTTGATTGCTTCGAACATGACACTTCACATTGTCTACTCTTTTTCCAAATGTCGGAAGGTGAAGCAATTGAATCAGTTAAGGTGTGCATAAATAGTTATGAGTACTCATGGACATAGAAATAAAAAGGACCTTCAAAAGTCAGAACAAGAAGAGACAAAAGTCGATTGGTTGAATTACTTTTGTCAATGGAAACAAGTTGTTTGTTGGAATCGTACTAGTTGTACTTTTGAAGAGGGTTTGGAATTTAGACTCATCAAATAGTAAATGAGTTTAGATCTCATTTAACAGTTCTGTTTTGATGTAGTTTTAATTGGATAGATAGGGATTCATAGGACCATAGAGGTTTGGAAGATTTTG

Coding sequence (CDS)

ATGGCGACTCAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGATGATATTTAGGGCTATTGAAGCGTTGAATAGTGACAATGGCTCAAACAAGTCCACAATATCAAAGTACATTGAATCGACATATGGGAACTTGCCAACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCGAGTGGGGACCTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCTACGGCACCTCCGCGACGAGGCCGTGGCAGGCCTCCCAAATCGAAGAGCCCTCTTCCACCCAGTTCTGGGTTATCTCCACCAAAGCCAAGAGGCCGCCCGCCAAAGGACCCCAATGCACCTCCAAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCAAGAGGACGGCCAAGGAAATTCCCTCAGTCAGCAACCACACCAGCTCCTCCGGCACCGAGCGGGAGGCCCAGAGGTCGACCTCCTAAGGTGAAGGCTACATTGACGGAAGTTAGTGTTCAACAATAG

Protein sequence

MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPPSSGLSPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ

Homology

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BLAST of PI0018015 vs. ExPASy Swiss-Prot
Match: Q00423 (HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 7.8e-57
Identity = 122/180 (67.78%), Postives = 142/180 (78.89%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVNKP SLPPYPEMI + +EALN  NGSNKS ISKYIE+TYG LP   +++L  HL
Sbjct: 1   MATEEVNKPQSLPPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGELP--DATVLGSHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPPSSGLSPPKPRGRPPKDPNA 120
           N MK SG+L F +NNYMK DP APP+RGRGRPPK K+PLPP + +SPP+PRGRPPKDPNA
Sbjct: 61  NKMKDSGELSFKQNNYMKADPNAPPKRGRGRPPKPKTPLPPGTVVSPPRPRGRPPKDPNA 120

Query: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPA-PSGRPRGRPPKVKATLTEVSVQ 180
           PPK PK    K + G+G+PRGRP+K P+S    AP A  SGRPRGRPPKVK  LTEVSV+
Sbjct: 121 PPKSPK---AKATPGSGRPRGRPKKVPRSPAVAAPTAVSSGRPRGRPPKVKPQLTEVSVE 175

[Close]

BLAST of PI0018015 vs. ExPASy Swiss-Prot
Match: Q10370 (HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 9.9e-44
Identity = 102/156 (65.38%), Postives = 118/156 (75.64%), Query Frame = 0


Query: 25  ALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAP 84
           ALN  +GSNKS ISKYIE+TYG LP    ++L  HLN MK SG+L F +NNYMK DP AP
Sbjct: 1   ALNEADGSNKSAISKYIETTYGELP--DETVLGSHLNKMKESGELAFKQNNYMKADPNAP 60

Query: 85  PRRGRGRPPKSKSPLPPSSGLSPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPR 144
           P+RGRGRPPK K PLPP + +SPP+PRGRPPKDPNAPPK PK    K +  TG+PRGRP+
Sbjct: 61  PKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKDPNAPPKSPK---AKATPATGRPRGRPK 120

Query: 145 KFPQSATTPAPPAPS-GRPRGRPPKVKATLTEVSVQ 180
           K  +S   P+P A S GRPRGRPPKVK  LTEVSV+
Sbjct: 121 KVARSPAVPSPTAVSTGRPRGRPPKVKPQLTEVSVE 151

[Close]

BLAST of PI0018015 vs. ExPASy Swiss-Prot
Match: Q43386 (HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.9e-35
Identity = 93/181 (51.38%), Postives = 117/181 (64.64%), Query Frame = 0


Query: 11  SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLV 70
           SLPPYP+MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G L+
Sbjct: 22  SLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLI 81

Query: 71  FWKNNYMKRDPTAPPRRGRGRPPKSKSPLPPSSGLS-----------PPKPRGRPPKDPN 130
             KNNYMK DP APP+RGRGRPPK K+     +  +           PP+ RGRPPK   
Sbjct: 82  MVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK--- 141

Query: 131 APPKPPKPVQMKVSSGTGKPRGRPRKFPQS-ATTPAPPAPSG------RPRGRPPKVKAT 174
            P  P +P Q KV +G+G+PRGRP K P++ + T A P P+       R RGRPPKVK T
Sbjct: 142 -PKDPSEPPQEKVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVKPT 198

[Close]

BLAST of PI0018015 vs. ExPASy Swiss-Prot
Match: Q9FYS5 (HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.5e-33
Identity = 95/186 (51.08%), Postives = 116/186 (62.37%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT E  KP  +PPYPEMI  AIE L+  +GSNKS ISKYIE  YG+LP  H+SLLT HL
Sbjct: 1   MATDEATKPSPIPPYPEMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAHASLLTAHL 60

Query: 61  NMMKASGDLVFWKNNYMKRD-PTAPPRRGRGRPPKSKSPLPPSSGLSPPKPRGRPPKDPN 120
             MK SG+LVF KNNY +   P APP+RGRGRPPK++ P  P+     P   GR      
Sbjct: 61  ARMKESGELVFLKNNYFRAGAPDAPPKRGRGRPPKARDPNAPAPAPKSPSSTGR---GRG 120

Query: 121 APPKPPKPVQMKV---SSGTGKPRGRPRKFPQS--ATTPAP---PAPSG-------RPRG 171
            PPK   P++  V   ++G  KPRGRP K  ++  A +P+P   PAP+G       R RG
Sbjct: 121 RPPKAKSPLEAAVKQATAGMPKPRGRPPKKAKTDGAASPSPSPAPAPAGDGSTPGKRGRG 180

[Close]

BLAST of PI0018015 vs. ExPASy TrEMBL
Match: A0A5D3DJY3 (HMG-Y-related protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold428G00090 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 2.3e-91
Identity = 177/180 (98.33%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPPSSGLSPPKPRGRPPKDPNA 120
           NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP SS +SPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPPKPRGRPPKDPNA 120

Query: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180
           PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of PI0018015 vs. ExPASy TrEMBL
Match: A0A1S3C432 (HMG-Y-related protein A-like OS=Cucumis melo OX=3656 GN=LOC103496787 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 2.3e-91
Identity = 177/180 (98.33%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPPSSGLSPPKPRGRPPKDPNA 120
           NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP SS +SPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPPKPRGRPPKDPNA 120

Query: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180
           PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of PI0018015 vs. ExPASy TrEMBL
Match: A0A0A0LCH9 (H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G284020 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.2e-89
Identity = 175/180 (97.22%), Postives = 177/180 (98.33%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPPSSGLSPPKPRGRPPKDPNA 120
           NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP SS +S PKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120

Query: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180
           PPKPPKPVQMKVSSGTGKPRGRPRKFPQSA+TPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of PI0018015 vs. ExPASy TrEMBL
Match: A0A6J1J6G8 (HMG-Y-related protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111482196 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 3.5e-84
Identity = 167/183 (91.26%), Postives = 170/183 (92.90%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPPSSGLSPPKPRGRPPKDPNA 120
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLPP S LSPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120

Query: 121 ---PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVS 180
              PPKPPKPVQMKVSSGTGKPRGRPRKFP+ AT PAPP PSGRPRGRPPKVK  LTEVS
Sbjct: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS 180

[Close]

BLAST of PI0018015 vs. ExPASy TrEMBL
Match: A0A6J1F494 (HMG-Y-related protein A-like OS=Cucurbita moschata OX=3662 GN=LOC111442250 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 3.5e-84
Identity = 167/183 (91.26%), Postives = 170/183 (92.90%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPPSSGLSPPKPRGRPPKDPNA 120
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLPP S LSPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120

Query: 121 ---PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVS 180
              PPKPPKPVQMKVSSGTGKPRGRPRKFP+ AT PAPP PSGRPRGRPPKVK  LTEVS
Sbjct: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS 180

[Close]

BLAST of PI0018015 vs. NCBI nr
Match: XP_008456999.1 (PREDICTED: HMG-Y-related protein A-like [Cucumis melo] >KAA0032765.1 HMG-Y-related protein A-like [Cucumis melo var. makuwa] >TYK23933.1 HMG-Y-related protein A-like [Cucumis melo var. makuwa])

HSP 1 Score: 344.7 bits (883), Expect = 4.7e-91
Identity = 177/180 (98.33%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPPSSGLSPPKPRGRPPKDPNA 120
           NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP SS +SPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPPKPRGRPPKDPNA 120

Query: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180
           PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of PI0018015 vs. NCBI nr
Match: XP_004145857.1 (HMG-Y-related protein A isoform X2 [Cucumis sativus])

HSP 1 Score: 339.0 bits (868), Expect = 2.6e-89
Identity = 175/180 (97.22%), Postives = 177/180 (98.33%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPPSSGLSPPKPRGRPPKDPNA 120
           NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP SS +S PKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120

Query: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180
           PPKPPKPVQMKVSSGTGKPRGRPRKFPQSA+TPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of PI0018015 vs. NCBI nr
Match: XP_031739266.1 (HMG-Y-related protein A isoform X1 [Cucumis sativus])

HSP 1 Score: 328.6 bits (841), Expect = 3.5e-86
Identity = 175/196 (89.29%), Postives = 177/196 (90.31%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPE----------------MIFRAIEALNSDNGSNKSTISKYIEST 60
           MATQEVNKPPSLPPYPE                MIFRAIEALNSDNGSNKSTISKYIEST
Sbjct: 1   MATQEVNKPPSLPPYPEISLLQRDNKPYKFIIKMIFRAIEALNSDNGSNKSTISKYIEST 60

Query: 61  YGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPPSSG 120
           YGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP SS 
Sbjct: 61  YGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSV 120

Query: 121 LSPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRG 180
           +S PKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSA+TPAPPAPSGRPRG
Sbjct: 121 ISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRG 180

[Close]

BLAST of PI0018015 vs. NCBI nr
Match: XP_038878302.1 (HMG-Y-related protein A-like [Benincasa hispida])

HSP 1 Score: 323.9 bits (829), Expect = 8.5e-85
Identity = 165/180 (91.67%), Postives = 171/180 (95.00%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVNKPPSLPPYPEMIFRAIEALNS+NGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSENGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPPSSGLSPPKPRGRPPKDPNA 120
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLPPSS LSPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPSSVLSPPKPRGRPPKDPNA 120

Query: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180
           PPKPPKPVQMKVSSGTGK RGRPRKFP + T P+PP PSGRPRGRPPKVK +LTEVSVQQ
Sbjct: 121 PPKPPKPVQMKVSSGTGKARGRPRKFPLATTMPSPPTPSGRPRGRPPKVKTSLTEVSVQQ 180

[Close]

BLAST of PI0018015 vs. NCBI nr
Match: XP_022935331.1 (HMG-Y-related protein A-like [Cucurbita moschata] >XP_022983645.1 HMG-Y-related protein A-like [Cucurbita maxima] >XP_023526335.1 HMG-Y-related protein A-like [Cucurbita pepo subsp. pepo] >KAG6581188.1 hypothetical protein SDJN03_21190, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017928.1 hypothetical protein SDJN02_19794 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 320.9 bits (821), Expect = 7.2e-84
Identity = 167/183 (91.26%), Postives = 170/183 (92.90%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPPSSGLSPPKPRGRPPKDPNA 120
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLPP S LSPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120

Query: 121 ---PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVS 180
              PPKPPKPVQMKVSSGTGKPRGRPRKFP+ AT PAPP PSGRPRGRPPKVK  LTEVS
Sbjct: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS 180

[Close]

BLAST of PI0018015 vs. TAIR 10
Match: AT1G14900.1 (high mobility group A )

HSP 1 Score: 149.1 bits (375), Expect = 3.5e-36
Identity = 93/181 (51.38%), Postives = 117/181 (64.64%), Query Frame = 0


Query: 11  SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLV 70
           SLPPYP+MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G L+
Sbjct: 22  SLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLI 81

Query: 71  FWKNNYMKRDPTAPPRRGRGRPPKSKSPLPPSSGLS-----------PPKPRGRPPKDPN 130
             KNNYMK DP APP+RGRGRPPK K+     +  +           PP+ RGRPPK   
Sbjct: 82  MVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK--- 141

Query: 131 APPKPPKPVQMKVSSGTGKPRGRPRKFPQS-ATTPAPPAPSG------RPRGRPPKVKAT 174
            P  P +P Q KV +G+G+PRGRP K P++ + T A P P+       R RGRPPKVK T
Sbjct: 142 -PKDPSEPPQEKVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVKPT 198

[Close]

BLAST of PI0018015 vs. TAIR 10
Match: AT1G48620.1 (high mobility group A5 )

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-13
Identity = 78/221 (35.29%), Postives = 98/221 (44.34%), Query Frame = 0


Query: 3   TQEVNKPPSL--PPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 62
           T  V   PS+  PPY +MI  AI ALN  +GS+K  IS+YIE  Y  +PT H +LLTHHL
Sbjct: 64  TSPVPPHPSISHPPYSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHL 123

Query: 63  NMMKASGDLVFWKNNY-MKRDPTAPP---------------------------------- 122
             +K SG LV  K +Y +   P  PP                                  
Sbjct: 124 KTLKTSGILVMVKKSYKLASTPPPPPPTSVAPSLEPPRSDFIVNENQPLPDPVLASSTPQ 183

Query: 123 --RRGRGRPPKSK----SPLPPSSGL----SPPKPRGRPPKDPNAPPKPPKPVQMKVSSG 172
             +RGRGRPPK+K     P P ++G         P  RP +    PP+ P   Q  V   
Sbjct: 184 TIKRGRGRPPKAKPDVVQPQPLTNGKLTWEQSELPVSRPEEIQIQPPQLPLQPQQPVK-- 243

[Close]

BLAST of PI0018015 vs. TAIR 10
Match: AT3G18035.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 62.4 bits (150), Expect = 4.3e-10
Identity = 68/208 (32.69%), Postives = 87/208 (41.83%), Query Frame = 0


Query: 13  PPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFW 72
           PPY EMI  AI ALN  +GS+K  IS+YIE  Y  L + H++LLTHHL  +K SG L   
Sbjct: 66  PPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALLTHHLKTLKTSGVLSMV 125

Query: 73  KNNY---------------------------------MKRDPTA------PPRRGRGRPP 132
           K +Y                                    DP A      P +RGRGRPP
Sbjct: 126 KKSYKIAGSSTPPASVAVAAAAAAQGLDVPRSEILHSSNNDPMASGSASQPLKRGRGRPP 185

Query: 133 KSK-----SPLPPSSGLSPPKPRGRP---PKDPNAPPKPPKPVQMKVSSGTGKPRGRPRK 172
           K K      PL      +  +  G+P    +   +P   P PV      G G+PR     
Sbjct: 186 KPKPESQPQPLQQLPPTNQVQANGQPIWEQQQVQSPVPVPTPVTESAKRGPGRPRKNGSA 245

[Close]

BLAST of PI0018015 vs. TAIR 10
Match: AT5G08780.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 56.2 bits (134), Expect = 3.1e-08
Identity = 27/70 (38.57%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 6   VNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKA 65
           +++ P  P Y  MIF AI  LN + G+++  IS++I+S Y NLP  H++LL+HHL  +  
Sbjct: 49  LSRTPDHPTYSAMIFIAIMDLNKEGGASEDAISEFIKSKYKNLPFAHTNLLSHHLAKLVE 108

Query: 66  SGDLVFWKNN 76
             +++   NN
Sbjct: 109 KREILCDCNN 118

The following BLAST results are available for this feature:

BLAST of PI0018015 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q00423	7.8e-57	67.78	HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q10370	9.9e-44	65.38	HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q43386	4.9e-35	51.38	HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1	[more]
Q9FYS5	3.5e-33	51.08	HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1	[more]

BLAST of PI0018015 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DJY3	2.3e-91	98.33	HMG-Y-related protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C432	2.3e-91	98.33	HMG-Y-related protein A-like OS=Cucumis melo OX=3656 GN=LOC103496787 PE=4 SV=1	[more]
A0A0A0LCH9	1.2e-89	97.22	H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G284020 PE=4 SV...	[more]
A0A6J1J6G8	3.5e-84	91.26	HMG-Y-related protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111482196 PE=4 SV...	[more]
A0A6J1F494	3.5e-84	91.26	HMG-Y-related protein A-like OS=Cucurbita moschata OX=3662 GN=LOC111442250 PE=4 ...	[more]

BLAST of PI0018015 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456999.1	4.7e-91	98.33	PREDICTED: HMG-Y-related protein A-like [Cucumis melo] >KAA0032765.1 HMG-Y-relat...	[more]
XP_004145857.1	2.6e-89	97.22	HMG-Y-related protein A isoform X2 [Cucumis sativus]	[more]
XP_031739266.1	3.5e-86	89.29	HMG-Y-related protein A isoform X1 [Cucumis sativus]	[more]
XP_038878302.1	8.5e-85	91.67	HMG-Y-related protein A-like [Benincasa hispida]	[more]
XP_022935331.1	7.2e-84	91.26	HMG-Y-related protein A-like [Cucurbita moschata] >XP_022983645.1 HMG-Y-related ...	[more]

BLAST of PI0018015 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14900.1	3.5e-36	51.38	high mobility group A	[more]
AT1G48620.1	1.1e-13	35.29	high mobility group A5	[more]
AT3G18035.1	4.3e-10	32.69	winged-helix DNA-binding transcription factor family protein	[more]
AT5G08780.1	3.1e-08	38.57	winged-helix DNA-binding transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000116	High mobility group protein HMGA	PRINTS	PR00930	HIGHMOBLTYIY	coord: 126..145 score: 37.86 coord: 99..110 score: 33.33 coord: 84..96 score: 58.24
IPR017956	AT hook, DNA-binding motif	PRINTS	PR00929	ATHOOK	coord: 158..168 score: 68.56 coord: 86..96 score: 68.18 coord: 106..117 score: 61.46
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 160..172 e-value: 1.1 score: 15.1 coord: 137..149 e-value: 1.1 score: 15.1 coord: 86..98 e-value: 3.9 score: 11.9 coord: 108..120 e-value: 0.79 score: 15.8
IPR017956	AT hook, DNA-binding motif	PFAM	PF02178	AT_hook	coord: 160..170 e-value: 0.16 score: 11.9 coord: 137..145 e-value: 1.1 score: 9.4 coord: 87..97 e-value: 1.5 score: 8.9 coord: 108..119 e-value: 0.11 score: 12.4
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 9..75 e-value: 2.8E-22 score: 90.0
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 13..73 e-value: 1.6E-9 score: 38.0
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 11..80 score: 21.828608
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 7..89 e-value: 9.8E-14 score: 53.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..180
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..128
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 1..175
IPR031059	High mobility group protein HMGA, plant	PANTHER	PTHR11467:SF103	HMG-Y-RELATED PROTEIN A	coord: 1..175
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 8..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0018015.1	PI0018015.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030261	chromosome condensation
biological_process	GO:0045910	negative regulation of DNA recombination
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0016584	nucleosome positioning
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0031492	nucleosomal DNA binding
molecular_function	GO:0003677	DNA binding