PI0017977 (gene) Melon (PI 482460) v1

Overview


Name	PI0017977
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	ribosome production factor 1-like
Location	chr04: 8990197 .. 8993711 (+)
RNA-Seq Expression	PI0017977
Synteny	PI0017977

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAAGAACAAAGAAAAGAGGACAGAAGTGCATGCGAACCTCAAGAACCAGAAGAAGCTTGAGAAATGCAAGAGGGCTAAGGCTCGTGATGCTGCTGAGAAGAAAGCTGTTGAACTTGGAGAAGAAGTACATCCATCAACTCCAGCATCTACTCTGTTTGTCTTCTATCTCTGAGATTCTGACCTCATATTTTTTTTCCCCCATAGCTTCCTCCTAGTTAGATTCCTCGCACCATTGAGAACACCAGGGAACTGACGAGACTGTTTGCAGACCTGGTTCTTCTTTTGAACTCTCAGTACATGACATTTTTGTAGCTTTGTTTATTTGTAATTCTTCTTATTTAGATTTCACAATTTTAATAAGTCTAGTTTTTGAAACTCTGCCGCTATTTGCTGGAAATGAAATGATGCTGATGAATTTAGTTCCATCAAAAAGTGCCGCATTTTGCCGAAAGTTCTAATTACTACTTGTCGTTTTAATTCTACGGTAAGATTTCTCATTATTACTAGTTATGCAACAATTTATTTTTTGAGCAACATTGGCTAAATGGTGACTGACCTAAAACATTTGCATTTGATTAGACTTAGTACCTTATACTTAGATTTTCTGCTTGTATGTGACTTGCTATTTGCAGATTGGACCTGCTTTTATATCAGAGTTGCTTTCGGTGATACCAAATGCACATTACTACAAGAGAGGAAATAACGATTTGAAGAAGGTTATACTCATTTATATTTTTTAATGAATATGAGAAGGAAAAGGAAATTAGATAATAAAGAAGTTTATACTAATATTTACAGAATACCAATTCTTCTCTTGCTTGTAGATTATAGAATATGCAAATGCCGAGGACTTCACTTCTTTGATGGTTGTCCATACGAGTAGGAGAAAGTTGGGTAAGTTGATAGCCCTTCATAAACCTTGCAGTTCATTCTTGCATGCTAATTCGTCTCTTCCAAACTTGTTTTCCCTTTCTCTAGTTTTTTTTTCTTTAGCTGTATAGATTAGATTCTTTTCTCGATCTAATGCAATGTTTTGAAATTCTAGATGGACTTGTAACTATTGGCTTACCTGAGGGACCTACTGCCGATTTCAAGATTTCGAATGTTGTCTTTTGTTAAGGACATTAAGGTATGCTGGTTCAAGTCAACAAAAATAACCTTTGAACTATTGTATTGCATTTTTACTACTACTGGCTTCTTGGAGGATTTTTTTTCCCAAGAAACCATAACCTTTTAATCTTTTCTTGCTTTGTAGAGTCATGGAAATCCAACCGGTCATCAGCAAGAACTTGTATTGACCCAACTTCACAATACGCCTTGGTCTTCGTTTTGGAAGGTTACTTTCTGTACCTTGAGTTCTTTATATATGCATATACTGCCTCTTGTGATGTCTACATTTAATTATGATATCTCAAGTTTTTCTCAATGCATTGACTTTTGTTGTTGTGTTGTTTGTTTAGATCAATACAATCACTATTCCCTCAAGATCTTGATTTTTGCAGACGGCGGGTTGTAACTTTTCATAACCAACGAGATTTTATATTTTTTCGGCATCTCCGGTATGCTGCCACATATATATATATACATATATATTTTCTGTATTTAGGTGAGTTGGACTATGATTAATTTGTGTCTTACCTTCTTAAATACATTTTTCAAAGCAAGGGATATAAAAAGAGGCTGACTCAAAAAACAAGTCCAAGGATACCAAGGGTGAAAAAGTTCCTCAGCAGAAAGTGATTGTGCTCGTCTTCAGGTCGATATTAACTTACTTCTCATAGAACGTTGTTTTATGATTGCTATAGTGGTTTATTTTGCAACTTGGAGACTTCAATACTGTTTACTTGTTTTCATCTTGTCTCTCTTTCTACAACTCAGTTTTTTTGATTCCTCTAATTCGTTTGGGGGTGATCATTAACATTAATTCATTTTATAATCAAGGAACCATGTCAGAGTCCCCTCTAGAAATTTAGAAACGTTGAGTGGGTTTTGTGAGAAATAGTCTATGGAAACCAATAAATTTCTTGCTTGCAAGTTCATCTTTGTTTTTTTTTTTTGGGTGCAATTGAGATTTGACAACGGGTAGAGAAAATTTTGTTCTTCTTTCTTCTCATAATTGTTTTCTCCTAGAGTTGCTTGCTTTCATATTTGTTCTTTTTAACCAATCTTTCATCCAGGAGTCTAAATGGGGGAGGAGAAGAAGAACAAGGGGTATAATCCCATCAATGATAAAGAACAAGGAAAAGAGGGCTGAAGTGCACGCGAACCTCAAGAACCAGAAGAAGCTTGAGAAATGCAAGAGGGCTAAGGCTCGTGATGCTGCTTAGAAGAAAGCTGTTGAACTTGGAGAAGAAGTATATCCATCAACTCCAACATCTACTCTGTTTGTCTTCTATCTCTTTGATTCTGACCTCATATTTCTTTTTTCTGTAGCCTCCTCCTAGGAAGATTCCTCGCACCATTGAGAACACCTGGGAGGTTGACTAGACTGTTTGCAAACCTGATGATGAAGAGGTTCTTCTTTTCAGTACATGACATTTTTGTAGCTTTTGTTTATTTGTAATTCTTCTTATTTAGAGTTCACAATTTTAATAAGGCTAGTTTTTGATACTCTGCAGCTATTTTCTGGAAATGAAATGATGCTGATGAATTTAGTTCCATCATAAAGCGCGACATTTTACCGAAAGTTCTAATTACTACTTGTCGTTTTAATTCTACGGTAAGATTTCTCATTATTACTAGTTTTGCAGCAATTTATTTTTTGAGCAACATTTTCTAAATGGTGACTAACCTAGAAAATTTGCATTTGATTAGACTCTTAGTACCTTATACTTAGATTTTCTGCTCATATGCATATACTGCCTCTTGTGATGTCTACATTTAATTTTTAGGTGTTCTTGTTTCTTTTTTTATGTTTATGTAATTTTGATATCTCAAGTTTTTCTCAATGCATTAACTTTTGTTGTGTTGTTTCTTTAGACTAATACCAAGATCTTTATTTTCGCGGTCGGCGGGTTGTAACGTTTCATAACCAACGAGATTTTATATTTTTTCGGCATCACCGGTAGGCTGCCATTTATGTATATATATATATATTTTTTCTGTATTTAGGTGTGTTGAACTATGACTAATTCGTGTTGTTTCCTTTTCAGATACATTTTTGAAAGCAAGGAAAAGAAAAAAGAGGCCGAGTCAAAAAAATAATTCGAAGGATACCAAGGGTGAGAAAGTTCCTGATTAGAAAGTGATTGCTCGTCTTCAGATCGATATTAACCTACTACTCATAGTACATTGTTTTATGATTTCTATAGTGGTGTATTTTGCAACTTGGAGACTTCATCACTGTTGAAATCATGAACCACCATATGTGGCCTAGTTCTCACTGAAAATACATTTTTGGTACTGATTTTCTTATAATAAGGTTAGCTTACCATGTTTTATGTTTATTACATCTTTGTTTCGTTTGTTATGTGTTTTTTATCAAGTCTTTGTTTTATAGTAAATGATTAA

mRNA sequence

ATGATAAAGAACAAAGAAAAGAGGACAGAAGTGCATGCGAACCTCAAGAACCAGAAGAAGCTTGAGAAATGCAAGAGGGCTAAGGCTCGTGATGCTGCTGAGAAGAAAGCTGTTGAACTTGGAGAAGAAATTCCTCGCACCATTGAGAACACCAGGGAACTGACGAGACTGTTTGCAGACCTGGTTCTTCTTTTGAACTCTCATTCCATCAAAAAGTGCCGCATTTTGCCGAAAGTTCTAATTACTACTTGTCGTTTTAATTCTACGATTGGACCTGCTTTTATATCAGAGTTGCTTTCGGTGATACCAAATGCACATTACTACAAGAGAGGAAATAACGATTTGAAGAAGATTATAGAATATGCAAATGCCGAGGACTTCACTTCTTTGATGGTTGTCCATACGAGTAGGAGAAAGTTGGATTCTTTTCTCGATCTAATGCAATGTTTTGAAATTCTAGATGGACTTGTAACTATTGGCTTACCTGAGGGACCTACTGCCGATTTCAAGATTTCGAATAGTCATGGAAATCCAACCGGTCATCAGCAAGAACTTGTATTGACCCAACTTCACAATACGCCTTGGTCTTCGTTTTGGAAGGAGTCTAAATGGGGGAGGAGAAGAAGAACAAGGGGTATAATCCCATCAATGATAAAGAACAAGGAAAAGAGGGCTGAAGTGCACGCGAACCTCAAGAACCAGAAGAAGCTTGAGAAATGCAAGAGGGCTAAGGCTCATACATTTTTGAAAGCAAGGAAAAGAAAAAAGAGGCCGAGTCAAAAAAATAATTCGAAGGATACCAAGGTAAATGATTAA

Coding sequence (CDS)

ATGATAAAGAACAAAGAAAAGAGGACAGAAGTGCATGCGAACCTCAAGAACCAGAAGAAGCTTGAGAAATGCAAGAGGGCTAAGGCTCGTGATGCTGCTGAGAAGAAAGCTGTTGAACTTGGAGAAGAAATTCCTCGCACCATTGAGAACACCAGGGAACTGACGAGACTGTTTGCAGACCTGGTTCTTCTTTTGAACTCTCATTCCATCAAAAAGTGCCGCATTTTGCCGAAAGTTCTAATTACTACTTGTCGTTTTAATTCTACGATTGGACCTGCTTTTATATCAGAGTTGCTTTCGGTGATACCAAATGCACATTACTACAAGAGAGGAAATAACGATTTGAAGAAGATTATAGAATATGCAAATGCCGAGGACTTCACTTCTTTGATGGTTGTCCATACGAGTAGGAGAAAGTTGGATTCTTTTCTCGATCTAATGCAATGTTTTGAAATTCTAGATGGACTTGTAACTATTGGCTTACCTGAGGGACCTACTGCCGATTTCAAGATTTCGAATAGTCATGGAAATCCAACCGGTCATCAGCAAGAACTTGTATTGACCCAACTTCACAATACGCCTTGGTCTTCGTTTTGGAAGGAGTCTAAATGGGGGAGGAGAAGAAGAACAAGGGGTATAATCCCATCAATGATAAAGAACAAGGAAAAGAGGGCTGAAGTGCACGCGAACCTCAAGAACCAGAAGAAGCTTGAGAAATGCAAGAGGGCTAAGGCTCATACATTTTTGAAAGCAAGGAAAAGAAAAAAGAGGCCGAGTCAAAAAAATAATTCGAAGGATACCAAGGTAAATGATTAA

Protein sequence

MIKNKEKRTEVHANLKNQKKLEKCKRAKARDAAEKKAVELGEEIPRTIENTRELTRLFADLVLLLNSHSIKKCRILPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGNNDLKKIIEYANAEDFTSLMVVHTSRRKLDSFLDLMQCFEILDGLVTIGLPEGPTADFKISNSHGNPTGHQQELVLTQLHNTPWSSFWKESKWGRRRRTRGIIPSMIKNKEKRAEVHANLKNQKKLEKCKRAKAHTFLKARKRKKRPSQKNNSKDTKVND

Homology

[Close]

BLAST of PI0017977 vs. ExPASy Swiss-Prot
Match: Q8AVP1 (Ribosome production factor 1 OS=Xenopus laevis OX=8355 GN=rpf1 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.7e-13
Identity = 71/207 (34.30%), Postives = 101/207 (48.79%), Query Frame = 0


Query: 2   IKNKEKRTEVHANLKNQKKLEKC----KRAKARDAAEKKAVELGEEIPRTIENTR---EL 61
           IKNK++R  +   LK +K+ EK     KR K R+A   KA    + +P+TIEN R   E 
Sbjct: 51  IKNKQRRQFMFIKLKQEKRKEKLILRKKRKKEREALGDKAPP--KPVPKTIENQRVYDET 110

Query: 62  TRLFADLVLLLNSHSIK-----KCRILPKVLITTCRFNSTIGPAFISELLSVIPNAHYYK 121
           T   AD  + L+  + +       +  PK+LITT          F  +L S+IPN+  Y 
Sbjct: 111 TVDPADEEVALDEATDEFAPYFNKQTTPKILITTSDRPRGRSVRFTEQLSSIIPNSDVYY 170

Query: 122 RGNNDLKKIIEYANAEDFTSLMVVHTSRRKLDSFLDLMQCFEILDGLVTIGLPEGPTADF 181
           R    LKKII    + D+T L+V++  R+             + +GLV   LP+GPTA F
Sbjct: 171 RRGLALKKIIPQCVSRDYTDLLVINEDRK-------------VPNGLVLCHLPDGPTAHF 230

Query: 182 KISN---------SHGNPTGHQQELVL 188
           KISN             PT H+ E++L
Sbjct: 231 KISNVRLRKEMKRKGKEPTEHKPEVIL 242

[Close]

BLAST of PI0017977 vs. ExPASy Swiss-Prot
Match: P38805 (Ribosome production factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPF1 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.8e-12
Identity = 66/208 (31.73%), Postives = 101/208 (48.56%), Query Frame = 0


Query: 2   IKNKEKRTEVHANLKNQKKLE----KCKRAK-ARDAAEKKAVELGEEIPRTIENTR---- 61
           I NK KR E+ A++K++K  E    + KRAK  R+  E +   L E + +TIENTR    
Sbjct: 9   ITNKLKRQEIFADIKHEKNKERHTMRRKRAKEERENPELREQRLKENVTQTIENTRVYDE 68

Query: 62  ----ELTRLFADLVLLLNSHSIKKCRILPKVLITTCRFNSTIGPAFISELLSVIPNAHYY 121
               E+     DL+   NS+S +     PK+ +TT          F + L+ ++PN  + 
Sbjct: 69  TINKEVEGDEDDLMRYFNSNSNEP----PKIFLTTNVNAKKSAYEFANILIEILPNVTFV 128

Query: 122 KRG-NNDLKKIIEYANAEDFTSLMVVHTSRRKLDSFLDLMQCFEILDGLVTIGLPEGPTA 181
           KR     LK+I +     +FT +++++  ++K             + GL  I LPEGPT 
Sbjct: 129 KRKFGYKLKEISDICIKRNFTDIVIINEDKKK-------------VTGLTFIHLPEGPTF 188

Query: 182 DFKISN--------SHGNPTGHQQELVL 188
            FK+S+         HG PT H  EL+L
Sbjct: 189 YFKLSSFVEVKKIVGHGRPTSHIPELIL 199

[Close]

BLAST of PI0017977 vs. ExPASy Swiss-Prot
Match: O14180 (Brix domain-containing protein C4F8.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC4F8.04 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.4e-11
Identity = 67/210 (31.90%), Postives = 98/210 (46.67%), Query Frame = 0


Query: 2   IKNKEKRTEVHANLKNQKKLEKCKRAKAR-----DAAEKKAVELGEEIPRTIENTREL-- 61
           IKNK  R + +    +QK  +K +R K R        EKK + L E IP TIE+ R    
Sbjct: 4   IKNKIVRQQQYMKALHQKNKDKLERRKERAKEEEKDPEKKRLRLSENIPATIESKRVYDE 63

Query: 62  --------TRLFADLVLLLNSHSIKKCRILPKVLITTCRFNSTIGPAFISELLSVIPNAH 121
                     L A+L     S    + R +PK+L+TT +  S     F SELL   PNA 
Sbjct: 64  TIIEDKPDEELQAELKDDEFSAYFSEERKVPKLLVTTSKRASRKCYDFASELLDCFPNAE 123

Query: 122 YYKR-GNNDLKKIIEYANAEDFTSLMVVHTSRRKLDSFLDLMQCFEILDGLVTIGLPEGP 181
           + KR G+ ++ +I E A    +T L+V++  R+K ++             L  + LP GP
Sbjct: 124 FRKRTGDIEVHEIAEAAAKRGYTDLLVLNEDRKKTNA-------------LTLVHLPNGP 183

Query: 182 TADFKISN--------SHGNPTGHQQELVL 188
           +  F +SN        +HG  TGH  EL++
Sbjct: 184 SFYFTLSNLQTAKEISNHGRSTGHIPELII 200

[Close]

BLAST of PI0017977 vs. ExPASy Swiss-Prot
Match: Q9VKB4 (Probable ribosome production factor 1 OS=Drosophila melanogaster OX=7227 GN=CG6712 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.5e-08
Identity = 63/207 (30.43%), Postives = 94/207 (45.41%), Query Frame = 0


Query: 2   IKNKEKRTEVHANLKNQKKLEKCKRAKARDAAEKKAVELGEEIPRTIENTRELTRL-FAD 61
           ++NKE+R  ++  +K +K  +K +  +AR  A   A         TIE+ RE  +   A+
Sbjct: 103 MRNKEQRLALYKKMKKEKHKKKMQERRARRKAGVPA-----NPGHTIESLREKDQTEVAN 162

Query: 62  LVLLLNSHSIKKCRI-----------LPKVLITTCRFNSTIGPAFISELLSVIPNAHYYK 121
           L    N    K+ ++            PKVLIT      T    F  EL  + PNA    
Sbjct: 163 LNDSDNEELQKELQLDDFSSYFERSYEPKVLITFADNPVTKTRKFGLELSRIFPNALVKI 222

Query: 122 RGNNDLKKIIEYANAEDFTSLMVVHTSRRKLDSFLDLMQCFEILDGLVTIGLPEGPTADF 181
           R  + +KKI + A  E+FT +++V+  RRK              +GL+ I LP GPTA F
Sbjct: 223 RNKSSVKKICKSAEREEFTDVVIVNEDRRK-------------PNGLLVIHLPNGPTAHF 282

Query: 182 KISN---------SHGNPTGHQQELVL 188
           K+SN          H   T H+ E++L
Sbjct: 283 KLSNVKLTSDIKRDHKEITKHRPEVIL 291

[Close]

BLAST of PI0017977 vs. ExPASy Swiss-Prot
Match: O13823 (U3 small nucleolar ribonucleoprotein protein imp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=imp4 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.1e-05
Identity = 48/178 (26.97%), Postives = 84/178 (47.19%), Query Frame = 0


Query: 5   KEKRTEVHANLKNQKKLEKCKRAKARDAAEKKAVELGEEIPRTIENTRELTRLF------ 64
           +E+R  ++   K  ++L++ K  + R A  +KA+E  +E+ + ++   +L + +      
Sbjct: 7   RERRQFIY---KRNQELQEAKLNEKRRAL-RKALEGNKELNKDLQEDSQLQKDYKYDESR 66

Query: 65  ---ADLVLLLNSHSIKKCRILPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGNNDL 124
               +    L+    +     PKVL+TT R  S+    F  E+  +IPN++   RGN  +
Sbjct: 67  ATQEETETNLDDEYHRLGEREPKVLVTTSREPSSRLAQFAKEVRLLIPNSYRLNRGNIVV 126

Query: 125 KKIIEYANAEDFTSLMVVHTSRRKLDSFLDLMQCFEILDGLVTIGLPEGPTADFKISN 174
             ++E A A D T ++++H  R              I DGLV   LP GPT  F + N
Sbjct: 127 GSLVEAARANDITDIVILHEHR-------------GIPDGLVISHLPYGPTLSFSLHN 167

[Close]

BLAST of PI0017977 vs. ExPASy TrEMBL
Match: A0A0A0LH42 (Brix domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G814330 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 3.1e-60
Identity = 144/208 (69.23%), Postives = 154/208 (74.04%), Query Frame = 0


Query: 2   IKNKEKRTEVHANLKNQKKLEKCKRAKARDAAEKKAVELGEE-----IPRTIENTRELTR 61
           IKNKEKR EVHANLK+QKKLEK KRAKARDAAEK+A+ELGEE     IPRTIENTRE+  
Sbjct: 15  IKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPRKIPRTIENTREVDE 74

Query: 62  LFA---DLVLLLNS-----HSIKKCRILPKVLITTCRFNSTIGPAFISELLSVIPNAHYY 121
                 D  L   +      SI K  ILPK+LITTCRFNSTIGPAFISELLSVIPNAHYY
Sbjct: 75  TVCKPDDEELFAGNDADEFSSIIKRDILPKILITTCRFNSTIGPAFISELLSVIPNAHYY 134

Query: 122 KRGNNDLKKIIEYANAEDFTSLMVVHTSRRKLDSFLDLMQCFEILDGLVTIGLPEGPTAD 181
           KRG NDLKKI+EYANA+DFTSLMVVHTSRRK             LDGL+ IGLPEGPTA 
Sbjct: 135 KRGTNDLKKIVEYANAKDFTSLMVVHTSRRK-------------LDGLLIIGLPEGPTAH 194

Query: 182 FKISN--------SHGNPTGHQQELVLT 189
           FKISN        +HGNPTGHQ ELVLT
Sbjct: 195 FKISNVVLRKEIKNHGNPTGHQPELVLT 209

[Close]

BLAST of PI0017977 vs. ExPASy TrEMBL
Match: A0A1S3B854 (ribosome production factor 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486828 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 8.5e-58
Identity = 163/292 (55.82%), Postives = 185/292 (63.36%), Query Frame = 0


Query: 1   MIKNKEKRTEVHANLKNQKKLEKCKRAKARDAAEKKAVELGEE-----IPRTIENTRELT 60
           MIKNKEKR EVHANLK+QKKLEK KRAKARDAAEK+A+ELGEE     IPRTIENTRE+ 
Sbjct: 14  MIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPRKIPRTIENTREVD 73

Query: 61  RLFA---DLVLLLNS-----HSIKKCRILPKVLITTCRFNSTIGPAFISELLSVIPNAHY 120
                  D  L   +      SI K  ILPKVLITTCRFNSTIGPAFISELLSVIPNAHY
Sbjct: 74  ETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAFISELLSVIPNAHY 133

Query: 121 YKRGNNDLKKIIEYANAEDFTSLMVVHTSRRKLDSFLDLMQCFEILDGLVTIGLPEGPTA 180
           YKRG NDLKKIIEYANA+DFTSLMVVHTSRRK             LDGL+ IGLPEGPTA
Sbjct: 134 YKRGTNDLKKIIEYANAKDFTSLMVVHTSRRK-------------LDGLLIIGLPEGPTA 193

Query: 181 DFKISN--------SHGNPTGHQQELVLTQLHNTPWSSFWKESKWGRR--RRTRGIIPSM 240
            FKISN        +HGNPTGHQ ELVLT             ++ G R  R  + + P  
Sbjct: 194 HFKISNVVLRKDIKNHGNPTGHQPELVLTNF----------TTRLGLRVGRLIQSLFPQD 253

Query: 241 IKNKEKRAEVHANLKNQKKLEKCKRAKAHTFL-KARKRKKRPSQKNNSKDTK 269
              + +R        NQ+     +    H ++ ++++ KK    K  SKDTK
Sbjct: 254 PNFRGRRV---VTFHNQRDFIFFRH---HRYIFESKENKKEADSKKKSKDTK 276

[Close]

BLAST of PI0017977 vs. ExPASy TrEMBL
Match: A0A5A7UHC7 (Ribosome production factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006030 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 8.5e-58
Identity = 163/292 (55.82%), Postives = 185/292 (63.36%), Query Frame = 0


Query: 1   MIKNKEKRTEVHANLKNQKKLEKCKRAKARDAAEKKAVELGEE-----IPRTIENTRELT 60
           MIKNKEKR EVHANLK+QKKLEK KRAKARDAAEK+A+ELGEE     IPRTIENTRE+ 
Sbjct: 14  MIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPRKIPRTIENTREVD 73

Query: 61  RLFA---DLVLLLNS-----HSIKKCRILPKVLITTCRFNSTIGPAFISELLSVIPNAHY 120
                  D  L   +      SI K  ILPKVLITTCRFNSTIGPAFISELLSVIPNAHY
Sbjct: 74  ETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAFISELLSVIPNAHY 133

Query: 121 YKRGNNDLKKIIEYANAEDFTSLMVVHTSRRKLDSFLDLMQCFEILDGLVTIGLPEGPTA 180
           YKRG NDLKKIIEYANA+DFTSLMVVHTSRRK             LDGL+ IGLPEGPTA
Sbjct: 134 YKRGTNDLKKIIEYANAKDFTSLMVVHTSRRK-------------LDGLLIIGLPEGPTA 193

Query: 181 DFKISN--------SHGNPTGHQQELVLTQLHNTPWSSFWKESKWGRR--RRTRGIIPSM 240
            FKISN        +HGNPTGHQ ELVLT             ++ G R  R  + + P  
Sbjct: 194 HFKISNVVLRKDIKNHGNPTGHQPELVLTNF----------TTRLGLRVGRLIQSLFPQD 253

Query: 241 IKNKEKRAEVHANLKNQKKLEKCKRAKAHTFL-KARKRKKRPSQKNNSKDTK 269
              + +R        NQ+     +    H ++ ++++ KK    K  SKDTK
Sbjct: 254 PNFRGRRV---VTFHNQRDFIFFRH---HRYIFESKENKKEADSKKKSKDTK 276

[Close]

BLAST of PI0017977 vs. ExPASy TrEMBL
Match: A0A6J1DPH5 (ribosome production factor 1-like OS=Momordica charantia OX=3673 GN=LOC111023106 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 1.8e-55
Identity = 158/292 (54.11%), Postives = 182/292 (62.33%), Query Frame = 0


Query: 1   MIKNKEKRTEVHANLKNQKKLEKCKRAKARDAAEKKAVELGEE-----IPRTIENTRELT 60
           MIKNKEKR EVHANLK QKKLEK KRAKARDA+EK+A+ELGEE     IPRTIENTRE+ 
Sbjct: 15  MIKNKEKRKEVHANLKQQKKLEKRKRAKARDASEKQALELGEEPPPRMIPRTIENTREVD 74

Query: 61  RLFA---DLVLLLNS-----HSIKKCRILPKVLITTCRFNSTIGPAFISELLSVIPNAHY 120
                  D  L   +      SI K   LPKVLITTCRFNSTIGP+FISELLSVIPNAHY
Sbjct: 75  ETVCKPDDEELFAGNDADEFSSIIKRHTLPKVLITTCRFNSTIGPSFISELLSVIPNAHY 134

Query: 121 YKRGNNDLKKIIEYANAEDFTSLMVVHTSRRKLDSFLDLMQCFEILDGLVTIGLPEGPTA 180
           YKRG NDLKKIIEYANA+DFTSLMVVHTSRRK             LDGL+ IGLPEGPTA
Sbjct: 135 YKRGTNDLKKIIEYANAKDFTSLMVVHTSRRK-------------LDGLLIIGLPEGPTA 194

Query: 181 DFKISN--------SHGNPTGHQQELVLTQLHNTPWSSFWKESKWGRR--RRTRGIIPSM 240
            FKISN        +HGNPT H+ ELVLT             ++ G R  R  + + P  
Sbjct: 195 HFKISNVVLRKDIKNHGNPTSHEPELVLTNF----------TTRLGLRVGRLIQSLFPQD 254

Query: 241 IKNKEKRAEVHANLKNQKKLEKCKRAKAHTFL-KARKRKKRPSQKNNSKDTK 269
              + +R        NQ+     +    H ++  +++ KK    K+NSKD K
Sbjct: 255 PNFRGRRV---VTFHNQRDFIFFRH---HRYIFDSKENKKEADSKSNSKDAK 277

[Close]

BLAST of PI0017977 vs. ExPASy TrEMBL
Match: A0A6J1DT48 (ribosome production factor 1-like OS=Momordica charantia OX=3673 GN=LOC111022909 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 3.9e-55
Identity = 157/292 (53.77%), Postives = 182/292 (62.33%), Query Frame = 0


Query: 1   MIKNKEKRTEVHANLKNQKKLEKCKRAKARDAAEKKAVELGEE-----IPRTIENTRELT 60
           MIKNKEKR EVHANLK QKKLEK KRAKARDA+EK+A+ELGEE     IPRTIENTRE+ 
Sbjct: 15  MIKNKEKRKEVHANLKQQKKLEKRKRAKARDASEKQALELGEEPPPRMIPRTIENTREVD 74

Query: 61  RLFA---DLVLLLNS-----HSIKKCRILPKVLITTCRFNSTIGPAFISELLSVIPNAHY 120
                  D  L   +      SI K   LPKVLITTCRFNS+IGP+FISELLSVIPNAHY
Sbjct: 75  ETVCKPDDEELFAGNDADEFSSIIKRHTLPKVLITTCRFNSSIGPSFISELLSVIPNAHY 134

Query: 121 YKRGNNDLKKIIEYANAEDFTSLMVVHTSRRKLDSFLDLMQCFEILDGLVTIGLPEGPTA 180
           YKRG NDLKKIIEYANA+DFTSLMVVHTSRRK             LDGL+ IGLPEGPTA
Sbjct: 135 YKRGTNDLKKIIEYANAKDFTSLMVVHTSRRK-------------LDGLLIIGLPEGPTA 194

Query: 181 DFKISN--------SHGNPTGHQQELVLTQLHNTPWSSFWKESKWGRR--RRTRGIIPSM 240
            FKISN        +HGNPT H+ ELVLT             ++ G R  R  + + P  
Sbjct: 195 HFKISNVVLRKDIKNHGNPTSHEPELVLTNF----------TTRLGLRVGRLIQSLFPQD 254

Query: 241 IKNKEKRAEVHANLKNQKKLEKCKRAKAHTFL-KARKRKKRPSQKNNSKDTK 269
              + +R        NQ+     +    H ++  +++ KK    K+NSKD K
Sbjct: 255 PNFRGRRV---VTFHNQRDFVFFRH---HRYIFDSKENKKEADSKSNSKDAK 277

[Close]

BLAST of PI0017977 vs. NCBI nr
Match: XP_031737500.1 (ribosome production factor 1 [Cucumis sativus] >KGN59366.1 hypothetical protein Csa_002461 [Cucumis sativus])

HSP 1 Score: 241.9 bits (616), Expect = 6.4e-60
Identity = 144/208 (69.23%), Postives = 154/208 (74.04%), Query Frame = 0


Query: 2   IKNKEKRTEVHANLKNQKKLEKCKRAKARDAAEKKAVELGEE-----IPRTIENTRELTR 61
           IKNKEKR EVHANLK+QKKLEK KRAKARDAAEK+A+ELGEE     IPRTIENTRE+  
Sbjct: 15  IKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPRKIPRTIENTREVDE 74

Query: 62  LFA---DLVLLLNS-----HSIKKCRILPKVLITTCRFNSTIGPAFISELLSVIPNAHYY 121
                 D  L   +      SI K  ILPK+LITTCRFNSTIGPAFISELLSVIPNAHYY
Sbjct: 75  TVCKPDDEELFAGNDADEFSSIIKRDILPKILITTCRFNSTIGPAFISELLSVIPNAHYY 134

Query: 122 KRGNNDLKKIIEYANAEDFTSLMVVHTSRRKLDSFLDLMQCFEILDGLVTIGLPEGPTAD 181
           KRG NDLKKI+EYANA+DFTSLMVVHTSRRK             LDGL+ IGLPEGPTA 
Sbjct: 135 KRGTNDLKKIVEYANAKDFTSLMVVHTSRRK-------------LDGLLIIGLPEGPTAH 194

Query: 182 FKISN--------SHGNPTGHQQELVLT 189
           FKISN        +HGNPTGHQ ELVLT
Sbjct: 195 FKISNVVLRKEIKNHGNPTGHQPELVLT 209

[Close]

BLAST of PI0017977 vs. NCBI nr
Match: XP_008443155.1 (PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo] >XP_008443156.1 PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo] >XP_016899701.1 PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo] >KAA0053947.1 ribosome production factor 1 isoform X1 [Cucumis melo var. makuwa] >TYK25457.1 ribosome production factor 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 233.8 bits (595), Expect = 1.8e-57
Identity = 163/292 (55.82%), Postives = 185/292 (63.36%), Query Frame = 0


Query: 1   MIKNKEKRTEVHANLKNQKKLEKCKRAKARDAAEKKAVELGEE-----IPRTIENTRELT 60
           MIKNKEKR EVHANLK+QKKLEK KRAKARDAAEK+A+ELGEE     IPRTIENTRE+ 
Sbjct: 14  MIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPRKIPRTIENTREVD 73

Query: 61  RLFA---DLVLLLNS-----HSIKKCRILPKVLITTCRFNSTIGPAFISELLSVIPNAHY 120
                  D  L   +      SI K  ILPKVLITTCRFNSTIGPAFISELLSVIPNAHY
Sbjct: 74  ETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAFISELLSVIPNAHY 133

Query: 121 YKRGNNDLKKIIEYANAEDFTSLMVVHTSRRKLDSFLDLMQCFEILDGLVTIGLPEGPTA 180
           YKRG NDLKKIIEYANA+DFTSLMVVHTSRRK             LDGL+ IGLPEGPTA
Sbjct: 134 YKRGTNDLKKIIEYANAKDFTSLMVVHTSRRK-------------LDGLLIIGLPEGPTA 193

Query: 181 DFKISN--------SHGNPTGHQQELVLTQLHNTPWSSFWKESKWGRR--RRTRGIIPSM 240
            FKISN        +HGNPTGHQ ELVLT             ++ G R  R  + + P  
Sbjct: 194 HFKISNVVLRKDIKNHGNPTGHQPELVLTNF----------TTRLGLRVGRLIQSLFPQD 253

Query: 241 IKNKEKRAEVHANLKNQKKLEKCKRAKAHTFL-KARKRKKRPSQKNNSKDTK 269
              + +R        NQ+     +    H ++ ++++ KK    K  SKDTK
Sbjct: 254 PNFRGRRV---VTFHNQRDFIFFRH---HRYIFESKENKKEADSKKKSKDTK 276

[Close]

BLAST of PI0017977 vs. NCBI nr
Match: XP_038906205.1 (ribosome production factor 1 [Benincasa hispida])

HSP 1 Score: 233.0 bits (593), Expect = 3.0e-57
Identity = 162/292 (55.48%), Postives = 183/292 (62.67%), Query Frame = 0


Query: 1   MIKNKEKRTEVHANLKNQKKLEKCKRAKARDAAEKKAVELGEE-----IPRTIENTRELT 60
           MIKNKEKR EVHANLKNQKKLEK KRAKARDAAEK+A+ELGEE     IPRTIENTRE+ 
Sbjct: 14  MIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEELPPRKIPRTIENTREVD 73

Query: 61  RLFA---DLVLLLNS-----HSIKKCRILPKVLITTCRFNSTIGPAFISELLSVIPNAHY 120
                  D  L   +      SI K  ILPKVLITTCRFNSTIGP FISELLSVIPNAHY
Sbjct: 74  ETLCKPDDEELFAGNDADEFSSIIKREILPKVLITTCRFNSTIGPTFISELLSVIPNAHY 133

Query: 121 YKRGNNDLKKIIEYANAEDFTSLMVVHTSRRKLDSFLDLMQCFEILDGLVTIGLPEGPTA 180
           YKRG NDLKKIIEYANA+DFTSLMVVHTSRRK             LDGL+ IGLPEGPTA
Sbjct: 134 YKRGTNDLKKIIEYANAKDFTSLMVVHTSRRK-------------LDGLLIIGLPEGPTA 193

Query: 181 DFKISN--------SHGNPTGHQQELVLTQLHNTPWSSFWKESKWGRR--RRTRGIIPSM 240
            FKISN        +HGNPT HQ ELVLT             ++ G R  R  + + P  
Sbjct: 194 HFKISNVVLRKDIKNHGNPTSHQPELVLTNF----------TTRLGLRIGRLIQALFPQD 253

Query: 241 IKNKEKRAEVHANLKNQKKLEKCKRAKAHTFL-KARKRKKRPSQKNNSKDTK 269
              + +R        NQ+     +    H ++ ++++ KK    K  SKDTK
Sbjct: 254 PNFRGRRV---VTFHNQRDFIFFRH---HRYIFESKENKKEADSKKKSKDTK 276

[Close]

BLAST of PI0017977 vs. NCBI nr
Match: XP_022156150.1 (ribosome production factor 1-like [Momordica charantia] >XP_022156151.1 ribosome production factor 1-like [Momordica charantia])

HSP 1 Score: 226.1 bits (575), Expect = 3.7e-55
Identity = 158/292 (54.11%), Postives = 182/292 (62.33%), Query Frame = 0


Query: 1   MIKNKEKRTEVHANLKNQKKLEKCKRAKARDAAEKKAVELGEE-----IPRTIENTRELT 60
           MIKNKEKR EVHANLK QKKLEK KRAKARDA+EK+A+ELGEE     IPRTIENTRE+ 
Sbjct: 15  MIKNKEKRKEVHANLKQQKKLEKRKRAKARDASEKQALELGEEPPPRMIPRTIENTREVD 74

Query: 61  RLFA---DLVLLLNS-----HSIKKCRILPKVLITTCRFNSTIGPAFISELLSVIPNAHY 120
                  D  L   +      SI K   LPKVLITTCRFNSTIGP+FISELLSVIPNAHY
Sbjct: 75  ETVCKPDDEELFAGNDADEFSSIIKRHTLPKVLITTCRFNSTIGPSFISELLSVIPNAHY 134

Query: 121 YKRGNNDLKKIIEYANAEDFTSLMVVHTSRRKLDSFLDLMQCFEILDGLVTIGLPEGPTA 180
           YKRG NDLKKIIEYANA+DFTSLMVVHTSRRK             LDGL+ IGLPEGPTA
Sbjct: 135 YKRGTNDLKKIIEYANAKDFTSLMVVHTSRRK-------------LDGLLIIGLPEGPTA 194

Query: 181 DFKISN--------SHGNPTGHQQELVLTQLHNTPWSSFWKESKWGRR--RRTRGIIPSM 240
            FKISN        +HGNPT H+ ELVLT             ++ G R  R  + + P  
Sbjct: 195 HFKISNVVLRKDIKNHGNPTSHEPELVLTNF----------TTRLGLRVGRLIQSLFPQD 254

Query: 241 IKNKEKRAEVHANLKNQKKLEKCKRAKAHTFL-KARKRKKRPSQKNNSKDTK 269
              + +R        NQ+     +    H ++  +++ KK    K+NSKD K
Sbjct: 255 PNFRGRRV---VTFHNQRDFIFFRH---HRYIFDSKENKKEADSKSNSKDAK 277

[Close]

BLAST of PI0017977 vs. NCBI nr
Match: XP_022155906.1 (ribosome production factor 1-like [Momordica charantia])

HSP 1 Score: 224.9 bits (572), Expect = 8.1e-55
Identity = 157/292 (53.77%), Postives = 182/292 (62.33%), Query Frame = 0


Query: 1   MIKNKEKRTEVHANLKNQKKLEKCKRAKARDAAEKKAVELGEE-----IPRTIENTRELT 60
           MIKNKEKR EVHANLK QKKLEK KRAKARDA+EK+A+ELGEE     IPRTIENTRE+ 
Sbjct: 15  MIKNKEKRKEVHANLKQQKKLEKRKRAKARDASEKQALELGEEPPPRMIPRTIENTREVD 74

Query: 61  RLFA---DLVLLLNS-----HSIKKCRILPKVLITTCRFNSTIGPAFISELLSVIPNAHY 120
                  D  L   +      SI K   LPKVLITTCRFNS+IGP+FISELLSVIPNAHY
Sbjct: 75  ETVCKPDDEELFAGNDADEFSSIIKRHTLPKVLITTCRFNSSIGPSFISELLSVIPNAHY 134

Query: 121 YKRGNNDLKKIIEYANAEDFTSLMVVHTSRRKLDSFLDLMQCFEILDGLVTIGLPEGPTA 180
           YKRG NDLKKIIEYANA+DFTSLMVVHTSRRK             LDGL+ IGLPEGPTA
Sbjct: 135 YKRGTNDLKKIIEYANAKDFTSLMVVHTSRRK-------------LDGLLIIGLPEGPTA 194

Query: 181 DFKISN--------SHGNPTGHQQELVLTQLHNTPWSSFWKESKWGRR--RRTRGIIPSM 240
            FKISN        +HGNPT H+ ELVLT             ++ G R  R  + + P  
Sbjct: 195 HFKISNVVLRKDIKNHGNPTSHEPELVLTNF----------TTRLGLRVGRLIQSLFPQD 254

Query: 241 IKNKEKRAEVHANLKNQKKLEKCKRAKAHTFL-KARKRKKRPSQKNNSKDTK 269
              + +R        NQ+     +    H ++  +++ KK    K+NSKD K
Sbjct: 255 PNFRGRRV---VTFHNQRDFVFFRH---HRYIFDSKENKKEADSKSNSKDAK 277

[Close]

BLAST of PI0017977 vs. TAIR 10
Match: AT4G01560.1 (Ribosomal RNA processing Brix domain protein )

HSP 1 Score: 194.1 bits (492), Expect = 1.4e-49
Identity = 117/209 (55.98%), Postives = 143/209 (68.42%), Query Frame = 0


Query: 1   MIKNKEKRTEVHANLKNQKKLEKCKRAKARDAAEKKAVELGEE-----IPRTIENTREL- 60
           MIKNK+KR++V+A  K++KKLEK K+ +ARDAAEK+A+ELGEE     IP+TIENTRE  
Sbjct: 38  MIKNKDKRSKVYAKQKHEKKLEKQKKIRARDAAEKRALELGEEPPQKMIPKTIENTRESD 97

Query: 61  --------TRLFADLVLLLNSHSIKKCRILPKVLITTCRFNSTIGPAFISELLSVIPNAH 120
                     LFAD +     + + +  I PKVL+TTCRFNST GPA ISELLSVIPN+H
Sbjct: 98  ETVCRPDDEELFAD-IDADEFNPVLRREIAPKVLLTTCRFNSTRGPALISELLSVIPNSH 157

Query: 121 YYKRGNNDLKKIIEYANAEDFTSLMVVHTSRRKLDSFLDLMQCFEILDGLVTIGLPEGPT 180
           Y KRG  DLKKI+EYA  +DFTSL+VVHT+RR+ D+             L+ IGLP GPT
Sbjct: 158 YQKRGTYDLKKIVEYATKKDFTSLIVVHTNRREPDA-------------LLIIGLPNGPT 217

Query: 181 ADFKISN--------SHGNPTGHQQELVL 188
           A FK+SN        +HGNPT HQ ELVL
Sbjct: 218 AHFKLSNLVLRKDIKNHGNPTSHQPELVL 232

The following BLAST results are available for this feature:

BLAST of PI0017977 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8AVP1	2.7e-13	34.30	Ribosome production factor 1 OS=Xenopus laevis OX=8355 GN=rpf1 PE=2 SV=1	[more]
P38805	8.8e-12	31.73	Ribosome production factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S...	[more]
O14180	4.4e-11	31.90	Brix domain-containing protein C4F8.04 OS=Schizosaccharomyces pombe (strain 972 ...	[more]
Q9VKB4	4.5e-08	30.43	Probable ribosome production factor 1 OS=Drosophila melanogaster OX=7227 GN=CG67...	[more]
O13823	2.1e-05	26.97	U3 small nucleolar ribonucleoprotein protein imp4 OS=Schizosaccharomyces pombe (...	[more]

BLAST of PI0017977 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH42	3.1e-60	69.23	Brix domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G814330 PE=4 S...	[more]
A0A1S3B854	8.5e-58	55.82	ribosome production factor 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486828 ...	[more]
A0A5A7UHC7	8.5e-58	55.82	Ribosome production factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A6J1DPH5	1.8e-55	54.11	ribosome production factor 1-like OS=Momordica charantia OX=3673 GN=LOC111023106...	[more]
A0A6J1DT48	3.9e-55	53.77	ribosome production factor 1-like OS=Momordica charantia OX=3673 GN=LOC111022909...	[more]

BLAST of PI0017977 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737500.1	6.4e-60	69.23	ribosome production factor 1 [Cucumis sativus] >KGN59366.1 hypothetical protein ...	[more]
XP_008443155.1	1.8e-57	55.82	PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo] >XP_008443156....	[more]
XP_038906205.1	3.0e-57	55.48	ribosome production factor 1 [Benincasa hispida]	[more]
XP_022156150.1	3.7e-55	54.11	ribosome production factor 1-like [Momordica charantia] >XP_022156151.1 ribosome...	[more]
XP_022155906.1	8.1e-55	53.77	ribosome production factor 1-like [Momordica charantia]	[more]

BLAST of PI0017977 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G01560.1	1.4e-49	55.98	Ribosomal RNA processing Brix domain protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.10480		coord: 77..270 e-value: 1.2E-16 score: 62.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 234..271
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 237..261
None	No IPR available	PANTHER	PTHR22734:SF3	RIBOSOME PRODUCTION FACTOR 1	coord: 1..189
None	No IPR available	SUPERFAMILY	52954	Class II aaRS ABD-related	coord: 77..192
IPR044281	U3 snoRNP protein/Ribosome production factor 1	PANTHER	PTHR22734	U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4	coord: 1..189
IPR007109	Brix domain	PROSITE	PS50833	BRIX	coord: 77..173 score: 13.338839

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0017977.1	PI0017977.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000460	maturation of 5.8S rRNA
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030687	preribosome, large subunit precursor
molecular_function	GO:0042134	rRNA primary transcript binding
molecular_function	GO:0019843	rRNA binding