PI0017935 (gene) Melon (PI 482460) v1

Overview
NamePI0017935
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Locationchr03: 23235779 .. 23235970 (-)
RNA-Seq ExpressionPI0017935
SyntenyPI0017935
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGAATAATAGAAATGTGCCACCTCAACAAGCTGCCCAAGAACAGAATACCGCTTACATGGCGCATGATTTAGACAGACCAATTAGGTCTTATGCTGCACCAAACCTTTACAACTTCAACCCAGGAATCGCTTACCCTATGTTCGACGAGAATGTAAGATTCGAGATCAAACCTGTCATGCTATAG

mRNA sequence

ATGGAGAAGAATAATAGAAATGTGCCACCTCAACAAGCTGCCCAAGAACAGAATACCGCTTACATGGCGCATGATTTAGACAGACCAATTAGGTCTTATGCTGCACCAAACCTTTACAACTTCAACCCAGGAATCGCTTACCCTATGTTCGACGAGAATGTAAGATTCGAGATCAAACCTGTCATGCTATAG

Coding sequence (CDS)

ATGGAGAAGAATAATAGAAATGTGCCACCTCAACAAGCTGCCCAAGAACAGAATACCGCTTACATGGCGCATGATTTAGACAGACCAATTAGGTCTTATGCTGCACCAAACCTTTACAACTTCAACCCAGGAATCGCTTACCCTATGTTCGACGAGAATGTAAGATTCGAGATCAAACCTGTCATGCTATAG

Protein sequence

MEKNNRNVPPQQAAQEQNTAYMAHDLDRPIRSYAAPNLYNFNPGIAYPMFDENVRFEIKPVML
Homology
BLAST of PI0017935 vs. ExPASy TrEMBL
Match: A0A5A7V2U7 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001950 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.5e-15
Identity = 42/61 (68.85%), Postives = 48/61 (78.69%), Query Frame = 0

Query: 3  KNNRNVPPQQAAQEQNTAYMAHDLDRPIRSYAAPNLYNFNPGIAYPMFDENVRFEIKPVM 62
          +NN+ +P  QAAQ  N  Y+A D DRPIRSYA+PNLY+FNPGIAYP F EN RFEIK VM
Sbjct: 4  QNNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKLVM 63

Query: 63 L 64
          L
Sbjct: 64 L 64

BLAST of PI0017935 vs. ExPASy TrEMBL
Match: A0A5A7UDN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00900 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.0e-15
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 0

Query: 4  NNRNVPPQQAAQEQNTAYMAHDLDRPIRSYAAPNLYNFNPGIAYPMFDENVRFEIKPVML 63
          NN+N P  Q  QEQN AY+AHDLD+PI+SYA+PNLY+FNPGIAY  F ENV FEIK +ML
Sbjct: 2  NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

BLAST of PI0017935 vs. ExPASy TrEMBL
Match: A0A5D3CAB5 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00060 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.6e-13
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 3  KNNRNVPPQQAAQEQNTAYMAHDLDRPIRSYAAPNLYNFNPGIAYPMFDENVRFEIKPVM 62
          +NN+  P  QA Q  N  Y+AH+ DRPIRS  +PNLY FNPGI YP F EN RF+IKPVM
Sbjct: 38 QNNQEAPANQAIQVVNLTYLAHNRDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVM 97

Query: 63 L 64
          L
Sbjct: 98 L 98

BLAST of PI0017935 vs. ExPASy TrEMBL
Match: A0A5A7UXZ2 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00610 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.6e-13
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 3  KNNRNVPPQQAAQEQNTAYMAHDLDRPIRSYAAPNLYNFNPGIAYPMFDENVRFEIKPVM 62
          +NN+  P  QA Q  N  Y+AH+ DRPIRS  +PNLY FNPGI YP F EN RF+IKPVM
Sbjct: 38 QNNQEAPANQAIQVVNLTYLAHNRDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVM 97

Query: 63 L 64
          L
Sbjct: 98 L 98

BLAST of PI0017935 vs. ExPASy TrEMBL
Match: A0A5A7U2F0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001090 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 0

Query: 3  KNNRNVPPQQAAQEQNTAYMAHDLDRPIRSYAAPNLYNFNPGIAYPMFDEN 54
          +NN+ V   Q AQEQN  Y+AH +D+PIRSYA+ NLY+FNP I YP F EN
Sbjct: 13 QNNKGVATNQNAQEQNPTYLAHYMDKPIRSYASQNLYDFNPCITYPTFGEN 63

BLAST of PI0017935 vs. NCBI nr
Match: KAA0062403.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK26578.1 putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 7.3e-15
Identity = 42/61 (68.85%), Postives = 48/61 (78.69%), Query Frame = 0

Query: 3  KNNRNVPPQQAAQEQNTAYMAHDLDRPIRSYAAPNLYNFNPGIAYPMFDENVRFEIKPVM 62
          +NN+ +P  QAAQ  N  Y+A D DRPIRSYA+PNLY+FNPGIAYP F EN RFEIK VM
Sbjct: 4  QNNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKLVM 63

Query: 63 L 64
          L
Sbjct: 64 L 64

BLAST of PI0017935 vs. NCBI nr
Match: KAA0051815.1 (hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK21429.1 hypothetical protein E5676_scaffold609G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.2e-14
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 0

Query: 4  NNRNVPPQQAAQEQNTAYMAHDLDRPIRSYAAPNLYNFNPGIAYPMFDENVRFEIKPVML 63
          NN+N P  Q  QEQN AY+AHDLD+PI+SYA+PNLY+FNPGIAY  F ENV FEIK +ML
Sbjct: 2  NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

BLAST of PI0017935 vs. NCBI nr
Match: TYK08803.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 2.0e-12
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 3  KNNRNVPPQQAAQEQNTAYMAHDLDRPIRSYAAPNLYNFNPGIAYPMFDENVRFEIKPVM 62
          +NN+  P  QA Q  N  Y+AH+ DRPIRS  +PNLY FNPGI YP F EN RF+IKPVM
Sbjct: 38 QNNQEAPANQAIQVVNLTYLAHNRDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVM 97

Query: 63 L 64
          L
Sbjct: 98 L 98

BLAST of PI0017935 vs. NCBI nr
Match: KAA0060833.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 2.0e-12
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 3  KNNRNVPPQQAAQEQNTAYMAHDLDRPIRSYAAPNLYNFNPGIAYPMFDENVRFEIKPVM 62
          +NN+  P  QA Q  N  Y+AH+ DRPIRS  +PNLY FNPGI YP F EN RF+IKPVM
Sbjct: 38 QNNQEAPANQAIQVVNLTYLAHNRDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVM 97

Query: 63 L 64
          L
Sbjct: 98 L 98

BLAST of PI0017935 vs. NCBI nr
Match: KAA0047845.1 (hypothetical protein E6C27_scaffold133G001090 [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 2.3e-08
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 0

Query: 3  KNNRNVPPQQAAQEQNTAYMAHDLDRPIRSYAAPNLYNFNPGIAYPMFDEN 54
          +NN+ V   Q AQEQN  Y+AH +D+PIRSYA+ NLY+FNP I YP F EN
Sbjct: 13 QNNKGVATNQNAQEQNPTYLAHYMDKPIRSYASQNLYDFNPCITYPTFGEN 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V2U73.5e-1568.85Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7UDN86.0e-1570.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CAB59.6e-1362.30Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... [more]
A0A5A7UXZ29.6e-1362.30Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... [more]
A0A5A7U2F01.1e-0860.78Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0062403.17.3e-1568.85putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK... [more]
KAA0051815.11.2e-1470.00hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK2142... [more]
TYK08803.12.0e-1262.30Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw... [more]
KAA0060833.12.0e-1262.30Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw... [more]
KAA0047845.12.3e-0860.78hypothetical protein E6C27_scaffold133G001090 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0017935.1PI0017935.1mRNA