PI0017901 (gene) Melon (PI 482460) v1

Overview


Name	PI0017901
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon gag protein
Location	chr02: 17334467 .. 17335219 (-)
RNA-Seq Expression	PI0017901
Synteny	PI0017901

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGAAATACAGTAGACGCTGCAGCAGGTGGTGCTTTGGCAGACAAAACTCCTACTGAGGCGAGAGAGCTCCATTCAAGGATGGCTGAAAATTCACAGAATTTTGGAAATAGAGCATCCGAGCTCGATAGTTCATTAACCAAGGAAGTAAGTGAACTTAAATCTCAGATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCTAAATGTGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTGACTTAGTGGAAGAAGCAAATGTCATTAGGAAGTACAATCCTCATAGCAACACTTACAATGCCGGTTGGAGAGACAACTCTAACCTAAGGTGGGGAAACGACAACCAAACACCTTCACAAGCGACTTCCTCTTCAAATAATCAAGGTACGAATTTGGAATATTTAGTTAAAGCTCTTGCTACTAATACCATCTCTTTTCAAAATGAAATAAAGCAACAAATGTCTCATCTGACTAATGCGATAAGCAAGCTAGAAGGTAAAGGTAAACTTCTGGCTCAGCCTGATCATGCAAATGTAAGTGCCATCTCACTTAGAAGCGGTAAAATTCTGGAAACCCCTTCAAGTGAAGAAAAGGTAACTTCTACCTCTATCCTTCTAGAAAATAAAGATGAGAAAAATGAAGAAAAATTAGAAACTAGTTCTCTACCATCTAGTTCTAAAGGTAAATCTCATATTTTGGATTATACTCCATAA

mRNA sequence

ATGGATAGAAATACAGTAGACGCTGCAGCAGGTGGTGCTTTGGCAGACAAAACTCCTACTGAGGCGAGAGAGCTCCATTCAAGGATGGCTGAAAATTCACAGAATTTTGGAAATAGAGCATCCGAGCTCGATAGTTCATTAACCAAGGAAGTAAGTGAACTTAAATCTCAGATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCTAAATGTGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTGACTTAGTGGAAGAAGCAAATGTCATTAGGAAGTACAATCCTCATAGCAACACTTACAATGCCGGTTGGAGAGACAACTCTAACCTAAGGTGGGGAAACGACAACCAAACACCTTCACAAGCGACTTCCTCTTCAAATAATCAAGGTACGAATTTGGAATATTTAGTTAAAGCTCTTGCTACTAATACCATCTCTTTTCAAAATGAAATAAAGCAACAAATGTCTCATCTGACTAATGCGATAAGCAAGCTAGAAGGTAAAGGTAAACTTCTGGCTCAGCCTGATCATGCAAATGTAAGTGCCATCTCACTTAGAAGCGGTAAAATTCTGGAAACCCCTTCAAGTGAAGAAAAGGTAACTTCTACCTCTATCCTTCTAGAAAATAAAGATGAGAAAAATGAAGAAAAATTAGAAACTAGTTCTCTACCATCTAGTTCTAAAGGTAAATCTCATATTTTGGATTATACTCCATAA

Coding sequence (CDS)

ATGGATAGAAATACAGTAGACGCTGCAGCAGGTGGTGCTTTGGCAGACAAAACTCCTACTGAGGCGAGAGAGCTCCATTCAAGGATGGCTGAAAATTCACAGAATTTTGGAAATAGAGCATCCGAGCTCGATAGTTCATTAACCAAGGAAGTAAGTGAACTTAAATCTCAGATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCTAAATGTGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTGACTTAGTGGAAGAAGCAAATGTCATTAGGAAGTACAATCCTCATAGCAACACTTACAATGCCGGTTGGAGAGACAACTCTAACCTAAGGTGGGGAAACGACAACCAAACACCTTCACAAGCGACTTCCTCTTCAAATAATCAAGGTACGAATTTGGAATATTTAGTTAAAGCTCTTGCTACTAATACCATCTCTTTTCAAAATGAAATAAAGCAACAAATGTCTCATCTGACTAATGCGATAAGCAAGCTAGAAGGTAAAGGTAAACTTCTGGCTCAGCCTGATCATGCAAATGTAAGTGCCATCTCACTTAGAAGCGGTAAAATTCTGGAAACCCCTTCAAGTGAAGAAAAGGTAACTTCTACCTCTATCCTTCTAGAAAATAAAGATGAGAAAAATGAAGAAAAATTAGAAACTAGTTCTCTACCATCTAGTTCTAAAGGTAAATCTCATATTTTGGATTATACTCCATAA

Protein sequence

MDRNTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYNPHSNTYNAGWRDNSNLRWGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSSEEKVTSTSILLENKDEKNEEKLETSSLPSSSKGKSHILDYTP

Homology

[Close]

BLAST of PI0017901 vs. ExPASy TrEMBL
Match: A0A5D3CRR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00610 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 5.9e-90
Identity = 179/251 (71.31%), Postives = 215/251 (85.66%), Query Frame = 0


Query: 2   DRNTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNM 61
           DRNTVDA AGGALADK PTEAREL S+MAENSQ+F NRASELD+SLTKEVSELKSQMLNM
Sbjct: 83  DRNTVDAVAGGALADKAPTEARELISKMAENSQSFENRASELDNSLTKEVSELKSQMLNM 142

Query: 62  TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYNPHSNTYNAGWRDNSN 121
           TTLLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N++RKY+PH NTYN+GWRDN N
Sbjct: 143 TTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNPN 202

Query: 122 LRWGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKG 181
           LRWGNDNQ  +QA S+S+NQGTNLE ++KALATNT+SFQ E+KQQM+ LT AISK++GKG
Sbjct: 203 LRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKG 262

Query: 182 KLLAQPDHANVSAISLRSGKILETPSS-EEKVTSTSILLENKDEKNEEKLETSSLPSSSK 241
           KL AQ ++ANVSA+SLRSGKIL+TP++ E+K TS  + L  K+E  EEK+ET+  P +SK
Sbjct: 263 KLSAQSNYANVSAVSLRSGKILDTPTTKEKKATSKPLPLNTKNECKEEKIETNPSPYNSK 322

Query: 242 G-KSHILDYTP 251
             K  + D+TP
Sbjct: 323 NDKFPLNDFTP 333

[Close]

BLAST of PI0017901 vs. ExPASy TrEMBL
Match: A0A5D3CB46 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold544G00170 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 8.6e-89
Identity = 174/242 (71.90%), Postives = 212/242 (87.60%), Query Frame = 0


Query: 3   RNTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNMT 62
           RNT+D AAGGALADKTPTEAREL SRMAENS++FGNRASELD+SLTKEVSELKSQMLNMT
Sbjct: 48  RNTLDVAAGGALADKTPTEARELISRMAENSESFGNRASELDNSLTKEVSELKSQMLNMT 107

Query: 63  TLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYNPHSNTYNAGWRDNSNL 122
           TLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ N++R+Y+PHSNTYN+GWRDN NL
Sbjct: 108 TLLTSFVQGTPPKVTKCGVCGLVGHPNDKCPKVIEDVNIVRRYDPHSNTYNSGWRDNLNL 167

Query: 123 RWGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKGK 182
           RWGNDNQ  +QA S+S+NQGTNLE ++KALATNT+SFQ ++KQQM+ LT AISK++GKGK
Sbjct: 168 RWGNDNQKYTQAPSTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTAISKMDGKGK 227

Query: 183 LLAQPDHANVSAISLRSGKILETPSS-EEKVTSTSILLENKDEKNEEKLETSSLPSSSKG 242
           L AQPDHANVSAISLRSGKIL+TP++ E+K+TS  + L +K+E  EEK+++    ++  G
Sbjct: 228 LPAQPDHANVSAISLRSGKILDTPTTKEKKLTSKPLPLNSKNESKEEKVDSKKEGNTQGG 287

Query: 243 KS 244
           ++
Sbjct: 288 RT 289

[Close]

BLAST of PI0017901 vs. ExPASy TrEMBL
Match: A0A5A7VQ60 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1704G00030 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 2.5e-88
Identity = 180/250 (72.00%), Postives = 216/250 (86.40%), Query Frame = 0


Query: 4   NTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNM-T 63
           NTVDAA G ALADKTPTEAREL SRMA+N Q+FGNRASE D+SLTKEVSELKSQMLNM T
Sbjct: 150 NTVDAAVGRALADKTPTEARELISRMAKNFQSFGNRASEFDNSLTKEVSELKSQMLNMTT 209

Query: 64  TLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYNPHSNTYNAGWRDNSNL 123
           TLLTSFVQG  +KV KCGVCGLVGH N+KCP+++E+ N++R+Y+PHSNTYN+GWRDN NL
Sbjct: 210 TLLTSFVQGTPLKVTKCGVCGLVGHLNEKCPEVIEDVNIVRRYDPHSNTYNSGWRDNPNL 269

Query: 124 RWGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKGK 183
           RWGNDNQ  +QA S+S+NQGTNLE ++KALATNT+SFQ E+KQQM+ LT AISK++GKGK
Sbjct: 270 RWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKGK 329

Query: 184 LLAQPDHANVSAISLRSGKILETPSS-EEKVTSTSILLENKDEKNEEKLETSSLPSSSKG 243
           L AQ DHANVSAISLRSGKIL+TP++ E+KVTS  + L +K+E  EEK+ET+  PS+SK 
Sbjct: 330 LPAQLDHANVSAISLRSGKILDTPTTKEKKVTSKPLPLNSKNESKEEKVETNPSPSNSKN 389

Query: 244 -KSHILDYTP 251
            KS + D+TP
Sbjct: 390 DKSPLNDFTP 399

[Close]

BLAST of PI0017901 vs. ExPASy TrEMBL
Match: A0A5D3CQR9 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1799G00090 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 2.5e-88
Identity = 177/249 (71.08%), Postives = 211/249 (84.74%), Query Frame = 0


Query: 4   NTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNMTT 63
           NTVDAAAGGALADKTPT AREL SRMAENSQ+FGN+ASELD+SL KEVSELKSQMLNMTT
Sbjct: 15  NTVDAAAGGALADKTPTGARELISRMAENSQSFGNKASELDNSLIKEVSELKSQMLNMTT 74

Query: 64  LLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYNPHSNTYNAGWRDNSNLR 123
           LLTSFV G  +KV KCGVCGLVGH NDKCP+++E+ N++R+Y+PH NTYN+GWRDN NLR
Sbjct: 75  LLTSFVLGTPLKVTKCGVCGLVGHQNDKCPEVIEDVNIVRRYDPHGNTYNSGWRDNPNLR 134

Query: 124 WGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKGKL 183
           WGNDNQ  + A S+S+ QGTNLE ++KALATNT+SFQ E+KQQM+ LT   SK++GKGKL
Sbjct: 135 WGNDNQKHTHAPSTSSTQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTTTSKMDGKGKL 194

Query: 184 LAQPDHANVSAISLRSGKILETPSS-EEKVTSTSILLENKDEKNEEKLETSSLPSSSKG- 243
            AQP HANVS ISLRSGKIL+TP+S E+KVTS  + L +K+E  EEK+ET+  PS+SK  
Sbjct: 195 SAQPGHANVSVISLRSGKILDTPTSKEKKVTSKPLPLNSKNESKEEKVETNPSPSNSKND 254

Query: 244 KSHILDYTP 251
           KS + D+TP
Sbjct: 255 KSPLNDFTP 263

[Close]

BLAST of PI0017901 vs. ExPASy TrEMBL
Match: A0A1S3CQF6 (uncharacterized protein LOC103503078 OS=Cucumis melo OX=3656 GN=LOC103503078 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 2.5e-88
Identity = 177/249 (71.08%), Postives = 211/249 (84.74%), Query Frame = 0


Query: 4   NTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNMTT 63
           NTVDAAAGGALADKTPT AREL SRMAENSQ+FGN+ASELD+SL KEVSELKSQMLNMTT
Sbjct: 1   NTVDAAAGGALADKTPTGARELISRMAENSQSFGNKASELDNSLIKEVSELKSQMLNMTT 60

Query: 64  LLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYNPHSNTYNAGWRDNSNLR 123
           LLTSFV G  +KV KCGVCGLVGH NDKCP+++E+ N++R+Y+PH NTYN+GWRDN NLR
Sbjct: 61  LLTSFVLGTPLKVTKCGVCGLVGHQNDKCPEVIEDVNIVRRYDPHGNTYNSGWRDNPNLR 120

Query: 124 WGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKGKL 183
           WGNDNQ  + A S+S+ QGTNLE ++KALATNT+SFQ E+KQQM+ LT   SK++GKGKL
Sbjct: 121 WGNDNQKHTHAPSTSSTQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTTTSKMDGKGKL 180

Query: 184 LAQPDHANVSAISLRSGKILETPSS-EEKVTSTSILLENKDEKNEEKLETSSLPSSSKG- 243
            AQP HANVS ISLRSGKIL+TP+S E+KVTS  + L +K+E  EEK+ET+  PS+SK  
Sbjct: 181 SAQPGHANVSVISLRSGKILDTPTSKEKKVTSKPLPLNSKNESKEEKVETNPSPSNSKND 240

Query: 244 KSHILDYTP 251
           KS + D+TP
Sbjct: 241 KSPLNDFTP 249

[Close]

BLAST of PI0017901 vs. NCBI nr
Match: KAA0047407.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 340.5 bits (872), Expect = 1.2e-89
Identity = 179/251 (71.31%), Postives = 215/251 (85.66%), Query Frame = 0


Query: 2   DRNTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNM 61
           DRNTVDA AGGALADK PTEAREL S+MAENSQ+F NRASELD+SLTKEVSELKSQMLNM
Sbjct: 83  DRNTVDAVAGGALADKAPTEARELISKMAENSQSFENRASELDNSLTKEVSELKSQMLNM 142

Query: 62  TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYNPHSNTYNAGWRDNSN 121
           TTLLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N++RKY+PH NTYN+GWRDN N
Sbjct: 143 TTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNPN 202

Query: 122 LRWGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKG 181
           LRWGNDNQ  +QA S+S+NQGTNLE ++KALATNT+SFQ E+KQQM+ LT AISK++GKG
Sbjct: 203 LRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKG 262

Query: 182 KLLAQPDHANVSAISLRSGKILETPSS-EEKVTSTSILLENKDEKNEEKLETSSLPSSSK 241
           KL AQ ++ANVSA+SLRSGKIL+TP++ E+K TS  + L  K+E  EEK+ET+  P +SK
Sbjct: 263 KLSAQSNYANVSAVSLRSGKILDTPTTKEKKATSKPLPLNTKNECKEEKIETNPSPYNSK 322

Query: 242 G-KSHILDYTP 251
             K  + D+TP
Sbjct: 323 NDKFPLNDFTP 333

[Close]

BLAST of PI0017901 vs. NCBI nr
Match: TYK07549.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 336.7 bits (862), Expect = 1.8e-88
Identity = 174/242 (71.90%), Postives = 212/242 (87.60%), Query Frame = 0


Query: 3   RNTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNMT 62
           RNT+D AAGGALADKTPTEAREL SRMAENS++FGNRASELD+SLTKEVSELKSQMLNMT
Sbjct: 48  RNTLDVAAGGALADKTPTEARELISRMAENSESFGNRASELDNSLTKEVSELKSQMLNMT 107

Query: 63  TLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYNPHSNTYNAGWRDNSNL 122
           TLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ N++R+Y+PHSNTYN+GWRDN NL
Sbjct: 108 TLLTSFVQGTPPKVTKCGVCGLVGHPNDKCPKVIEDVNIVRRYDPHSNTYNSGWRDNLNL 167

Query: 123 RWGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKGK 182
           RWGNDNQ  +QA S+S+NQGTNLE ++KALATNT+SFQ ++KQQM+ LT AISK++GKGK
Sbjct: 168 RWGNDNQKYTQAPSTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTAISKMDGKGK 227

Query: 183 LLAQPDHANVSAISLRSGKILETPSS-EEKVTSTSILLENKDEKNEEKLETSSLPSSSKG 242
           L AQPDHANVSAISLRSGKIL+TP++ E+K+TS  + L +K+E  EEK+++    ++  G
Sbjct: 228 LPAQPDHANVSAISLRSGKILDTPTTKEKKLTSKPLPLNSKNESKEEKVDSKKEGNTQGG 287

Query: 243 KS 244
           ++
Sbjct: 288 RT 289

[Close]

BLAST of PI0017901 vs. NCBI nr
Match: TYK14267.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 335.1 bits (858), Expect = 5.1e-88
Identity = 177/249 (71.08%), Postives = 211/249 (84.74%), Query Frame = 0


Query: 4   NTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNMTT 63
           NTVDAAAGGALADKTPT AREL SRMAENSQ+FGN+ASELD+SL KEVSELKSQMLNMTT
Sbjct: 15  NTVDAAAGGALADKTPTGARELISRMAENSQSFGNKASELDNSLIKEVSELKSQMLNMTT 74

Query: 64  LLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYNPHSNTYNAGWRDNSNLR 123
           LLTSFV G  +KV KCGVCGLVGH NDKCP+++E+ N++R+Y+PH NTYN+GWRDN NLR
Sbjct: 75  LLTSFVLGTPLKVTKCGVCGLVGHQNDKCPEVIEDVNIVRRYDPHGNTYNSGWRDNPNLR 134

Query: 124 WGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKGKL 183
           WGNDNQ  + A S+S+ QGTNLE ++KALATNT+SFQ E+KQQM+ LT   SK++GKGKL
Sbjct: 135 WGNDNQKHTHAPSTSSTQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTTTSKMDGKGKL 194

Query: 184 LAQPDHANVSAISLRSGKILETPSS-EEKVTSTSILLENKDEKNEEKLETSSLPSSSKG- 243
            AQP HANVS ISLRSGKIL+TP+S E+KVTS  + L +K+E  EEK+ET+  PS+SK  
Sbjct: 195 SAQPGHANVSVISLRSGKILDTPTSKEKKVTSKPLPLNSKNESKEEKVETNPSPSNSKND 254

Query: 244 KSHILDYTP 251
           KS + D+TP
Sbjct: 255 KSPLNDFTP 263

[Close]

BLAST of PI0017901 vs. NCBI nr
Match: XP_008465471.1 (PREDICTED: uncharacterized protein LOC103503078, partial [Cucumis melo])

HSP 1 Score: 335.1 bits (858), Expect = 5.1e-88
Identity = 177/249 (71.08%), Postives = 211/249 (84.74%), Query Frame = 0


Query: 4   NTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNMTT 63
           NTVDAAAGGALADKTPT AREL SRMAENSQ+FGN+ASELD+SL KEVSELKSQMLNMTT
Sbjct: 1   NTVDAAAGGALADKTPTGARELISRMAENSQSFGNKASELDNSLIKEVSELKSQMLNMTT 60

Query: 64  LLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYNPHSNTYNAGWRDNSNLR 123
           LLTSFV G  +KV KCGVCGLVGH NDKCP+++E+ N++R+Y+PH NTYN+GWRDN NLR
Sbjct: 61  LLTSFVLGTPLKVTKCGVCGLVGHQNDKCPEVIEDVNIVRRYDPHGNTYNSGWRDNPNLR 120

Query: 124 WGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKGKL 183
           WGNDNQ  + A S+S+ QGTNLE ++KALATNT+SFQ E+KQQM+ LT   SK++GKGKL
Sbjct: 121 WGNDNQKHTHAPSTSSTQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTTTSKMDGKGKL 180

Query: 184 LAQPDHANVSAISLRSGKILETPSS-EEKVTSTSILLENKDEKNEEKLETSSLPSSSKG- 243
            AQP HANVS ISLRSGKIL+TP+S E+KVTS  + L +K+E  EEK+ET+  PS+SK  
Sbjct: 181 SAQPGHANVSVISLRSGKILDTPTSKEKKVTSKPLPLNSKNESKEEKVETNPSPSNSKND 240

Query: 244 KSHILDYTP 251
           KS + D+TP
Sbjct: 241 KSPLNDFTP 249

[Close]

BLAST of PI0017901 vs. NCBI nr
Match: KAA0067359.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30663.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 335.1 bits (858), Expect = 5.1e-88
Identity = 180/250 (72.00%), Postives = 216/250 (86.40%), Query Frame = 0


Query: 4   NTVDAAAGGALADKTPTEARELHSRMAENSQNFGNRASELDSSLTKEVSELKSQMLNM-T 63
           NTVDAA G ALADKTPTEAREL SRMA+N Q+FGNRASE D+SLTKEVSELKSQMLNM T
Sbjct: 150 NTVDAAVGRALADKTPTEARELISRMAKNFQSFGNRASEFDNSLTKEVSELKSQMLNMTT 209

Query: 64  TLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYNPHSNTYNAGWRDNSNL 123
           TLLTSFVQG  +KV KCGVCGLVGH N+KCP+++E+ N++R+Y+PHSNTYN+GWRDN NL
Sbjct: 210 TLLTSFVQGTPLKVTKCGVCGLVGHLNEKCPEVIEDVNIVRRYDPHSNTYNSGWRDNPNL 269

Query: 124 RWGNDNQTPSQATSSSNNQGTNLEYLVKALATNTISFQNEIKQQMSHLTNAISKLEGKGK 183
           RWGNDNQ  +QA S+S+NQGTNLE ++KALATNT+SFQ E+KQQM+ LT AISK++GKGK
Sbjct: 270 RWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKGK 329

Query: 184 LLAQPDHANVSAISLRSGKILETPSS-EEKVTSTSILLENKDEKNEEKLETSSLPSSSKG 243
           L AQ DHANVSAISLRSGKIL+TP++ E+KVTS  + L +K+E  EEK+ET+  PS+SK 
Sbjct: 330 LPAQLDHANVSAISLRSGKILDTPTTKEKKVTSKPLPLNSKNESKEEKVETNPSPSNSKN 389

Query: 244 -KSHILDYTP 251
            KS + D+TP
Sbjct: 390 DKSPLNDFTP 399

The following BLAST results are available for this feature:

BLAST of PI0017901 vs.


Match Name	E-value	Identity	Description

BLAST of PI0017901 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CRR8	5.9e-90	71.31	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3CB46	8.6e-89	71.90	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7VQ60	2.5e-88	72.00	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3CQR9	2.5e-88	71.08	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3CQF6	2.5e-88	71.08	uncharacterized protein LOC103503078 OS=Cucumis melo OX=3656 GN=LOC103503078 PE=...	[more]

BLAST of PI0017901 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047407.1	1.2e-89	71.31	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotranspos...	[more]
TYK07549.1	1.8e-88	71.90	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK14267.1	5.1e-88	71.08	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
XP_008465471.1	5.1e-88	71.08	PREDICTED: uncharacterized protein LOC103503078, partial [Cucumis melo]	[more]
KAA0067359.1	5.1e-88	72.00	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30663.1 retrotranspos...	[more]

BLAST of PI0017901 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 160..180
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 232..250
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 216..231
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 206..250
None	No IPR available	PANTHER	PTHR24559:SF334	SUBFAMILY NOT NAMED	coord: 1..133
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 1..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0017901.1	PI0017901.1	mRNA