PI0017898 (gene) Melon (PI 482460) v1

Overview


Name	PI0017898
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Protein FAR1-RELATED SEQUENCE 4
Location	chr08: 3426964 .. 3427364 (-)
RNA-Seq Expression	PI0017898
Synteny	PI0017898

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACTGATCGTTCCTTTCCAAAAGCGATTGTCCATAAGGCTCGTACAAATCTTGGAGTTAGTATAAGTCATCAAAAAGCTTGGAGGGCAAAAGAACACATAATAAAGATATTAAAAGGTGATGTCGTTGAATCGTATTCGTTGATTGCAAGCTTTTTTGATAAATTGGTTGAGTGTATCCCAGGTATGATCAGCTTCCTATATCAAATTTATATTCATTTGCAGATAGATGGGGATAGACAAATATTAGCATCTATCACAGTTTATTTGGTATTTTTTGTTGGTGTTGATAGAAACATCTTGTAATTTTTATAGCTACATGCACTGCTTTAGAGATGGATGATAGTGGTCATTTCAAGTTTTGCTTTATGGCTTTTGATGCATCAATTGATGGGTGA

mRNA sequence

ATGTCTACTGATCGTTCCTTTCCAAAAGCGATTGTCCATAAGGCTCGTACAAATCTTGGAGTTAGTATAAGTCATCAAAAAGCTTGGAGGGCAAAAGAACACATAATAAAGATATTAAAAGGTGATGTCGTTGAATCGTATTCGTTGATTGCAAGCTTTTTTGATAAATTGGTTGAGTGTATCCCAGCTACATGCACTGCTTTAGAGATGGATGATAGTGGTCATTTCAAGTTTTGCTTTATGGCTTTTGATGCATCAATTGATGGGTGA

Coding sequence (CDS)

ATGTCTACTGATCGTTCCTTTCCAAAAGCGATTGTCCATAAGGCTCGTACAAATCTTGGAGTTAGTATAAGTCATCAAAAAGCTTGGAGGGCAAAAGAACACATAATAAAGATATTAAAAGGTGATGTCGTTGAATCGTATTCGTTGATTGCAAGCTTTTTTGATAAATTGGTTGAGTGTATCCCAGCTACATGCACTGCTTTAGAGATGGATGATAGTGGTCATTTCAAGTTTTGCTTTATGGCTTTTGATGCATCAATTGATGGGTGA

Protein sequence

MSTDRSFPKAIVHKARTNLGVSISHQKAWRAKEHIIKILKGDVVESYSLIASFFDKLVECIPATCTALEMDDSGHFKFCFMAFDASIDG

Homology

[Close]

BLAST of PI0017898 vs. ExPASy TrEMBL
Match: A0A5D3C7L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00780 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.8e-33
Identity = 72/89 (80.90%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 1   MSTDRSFPKAIVHKARTNLGVSISHQKAWRAKEHIIKILKGDVVESYSLIASFFDKLVEC 60
           MSTDRS PK IVHKARTNLGVSIS+QK WRAKEH++KIL GD+VESY+LI  FFDKLVE 
Sbjct: 19  MSTDRSIPKEIVHKARTNLGVSISYQKVWRAKEHMVKILHGDIVESYTLIPRFFDKLVES 78

Query: 61  IPATCTALEMDDSGHFKFCFMAFDASIDG 90
            P TCTALEMDD GHFKFCFMAF ASI G
Sbjct: 79  NPGTCTALEMDDCGHFKFCFMAFGASIQG 107

[Close]

BLAST of PI0017898 vs. ExPASy TrEMBL
Match: A0A5D3BGP1 (MULE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00990 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.3e-33
Identity = 71/89 (79.78%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 1  MSTDRSFPKAIVHKARTNLGVSISHQKAWRAKEHIIKILKGDVVESYSLIASFFDKLVEC 60
          MSTDRS PK IVHKART LGV IS+QKAWR KEHI+KIL GD VESY+LI  FFDKLVE 
Sbjct: 1  MSTDRSIPKEIVHKARTKLGVKISYQKAWRTKEHIVKILHGDTVESYALILRFFDKLVES 60

Query: 61 IPATCTALEMDDSGHFKFCFMAFDASIDG 90
           P TCTALEMDDSGHFKFCFMAF AS++G
Sbjct: 61 NPGTCTALEMDDSGHFKFCFMAFGASVEG 89

[Close]

BLAST of PI0017898 vs. ExPASy TrEMBL
Match: A0A5A7T2W2 (Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold918G00260 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-32
Identity = 70/89 (78.65%), Postives = 78/89 (87.64%), Query Frame = 0


Query: 1   MSTDRSFPKAIVHKARTNLGVSISHQKAWRAKEHIIKILKGDVVESYSLIASFFDKLVEC 60
           MST+RS P  IVHKARTNLG++IS+QKAWRAKEH++KIL GD VESY+LI  FFDKLVE 
Sbjct: 19  MSTNRSIPDEIVHKARTNLGINISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 78

Query: 61  IPATCTALEMDDSGHFKFCFMAFDASIDG 90
            P TCTALEMDDSGHFKFCFMAF ASI+G
Sbjct: 79  NPGTCTALEMDDSGHFKFCFMAFGASIEG 107

[Close]

BLAST of PI0017898 vs. ExPASy TrEMBL
Match: A0A5D3BVN2 (Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold968G00010 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-32
Identity = 70/89 (78.65%), Postives = 78/89 (87.64%), Query Frame = 0


Query: 1   MSTDRSFPKAIVHKARTNLGVSISHQKAWRAKEHIIKILKGDVVESYSLIASFFDKLVEC 60
           MST+RS P  IVHKARTNLG++IS+QKAWRAKEH++KIL GD VESY+LI  FFDKLVE 
Sbjct: 19  MSTNRSIPDEIVHKARTNLGINISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 78

Query: 61  IPATCTALEMDDSGHFKFCFMAFDASIDG 90
            P TCTALEMDDSGHFKFCFMAF ASI+G
Sbjct: 79  NPGTCTALEMDDSGHFKFCFMAFGASIEG 107

[Close]

BLAST of PI0017898 vs. ExPASy TrEMBL
Match: A0A5A7V7F3 (Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G001240 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.4e-32
Identity = 70/89 (78.65%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 1   MSTDRSFPKAIVHKARTNLGVSISHQKAWRAKEHIIKILKGDVVESYSLIASFFDKLVEC 60
           MSTD S PK IVHKARTNLGV+IS+QKAWRAKEH++KIL GD  ESY+LI  FFDKLVE 
Sbjct: 24  MSTDHSIPKEIVHKARTNLGVNISYQKAWRAKEHMVKILHGDRAESYALIPRFFDKLVES 83

Query: 61  IPATCTALEMDDSGHFKFCFMAFDASIDG 90
            P TCTALEMDDSGHFKFCFM F ASI+G
Sbjct: 84  NPGTCTALEMDDSGHFKFCFMVFGASIEG 112

[Close]

BLAST of PI0017898 vs. NCBI nr
Match: TYK07957.1 (hypothetical protein E5676_scaffold265G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 151.4 bits (381), Expect = 3.8e-33
Identity = 72/89 (80.90%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 1   MSTDRSFPKAIVHKARTNLGVSISHQKAWRAKEHIIKILKGDVVESYSLIASFFDKLVEC 60
           MSTDRS PK IVHKARTNLGVSIS+QK WRAKEH++KIL GD+VESY+LI  FFDKLVE 
Sbjct: 19  MSTDRSIPKEIVHKARTNLGVSISYQKVWRAKEHMVKILHGDIVESYTLIPRFFDKLVES 78

Query: 61  IPATCTALEMDDSGHFKFCFMAFDASIDG 90
            P TCTALEMDD GHFKFCFMAF ASI G
Sbjct: 79  NPGTCTALEMDDCGHFKFCFMAFGASIQG 107

[Close]

BLAST of PI0017898 vs. NCBI nr
Match: KAA0050206.1 (uncharacterized protein E6C27_scaffold355G00380 [Cucumis melo var. makuwa] >TYJ98206.1 uncharacterized protein E5676_scaffold180G00990 [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 1.1e-32
Identity = 71/89 (79.78%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 1  MSTDRSFPKAIVHKARTNLGVSISHQKAWRAKEHIIKILKGDVVESYSLIASFFDKLVEC 60
          MSTDRS PK IVHKART LGV IS+QKAWR KEHI+KIL GD VESY+LI  FFDKLVE 
Sbjct: 1  MSTDRSIPKEIVHKARTKLGVKISYQKAWRTKEHIVKILHGDTVESYALILRFFDKLVES 60

Query: 61 IPATCTALEMDDSGHFKFCFMAFDASIDG 90
           P TCTALEMDDSGHFKFCFMAF AS++G
Sbjct: 61 NPGTCTALEMDDSGHFKFCFMAFGASVEG 89

[Close]

BLAST of PI0017898 vs. NCBI nr
Match: TYK02872.1 (protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa])

HSP 1 Score: 148.7 bits (374), Expect = 2.4e-32
Identity = 70/89 (78.65%), Postives = 78/89 (87.64%), Query Frame = 0


Query: 1   MSTDRSFPKAIVHKARTNLGVSISHQKAWRAKEHIIKILKGDVVESYSLIASFFDKLVEC 60
           MST+RS P  IVHKARTNLG++IS+QKAWRAKEH++KIL GD VESY+LI  FFDKLVE 
Sbjct: 19  MSTNRSIPDEIVHKARTNLGINISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 78

Query: 61  IPATCTALEMDDSGHFKFCFMAFDASIDG 90
            P TCTALEMDDSGHFKFCFMAF ASI+G
Sbjct: 79  NPGTCTALEMDDSGHFKFCFMAFGASIEG 107

[Close]

BLAST of PI0017898 vs. NCBI nr
Match: KAA0037812.1 (protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa])

HSP 1 Score: 148.7 bits (374), Expect = 2.4e-32
Identity = 70/89 (78.65%), Postives = 78/89 (87.64%), Query Frame = 0


Query: 1   MSTDRSFPKAIVHKARTNLGVSISHQKAWRAKEHIIKILKGDVVESYSLIASFFDKLVEC 60
           MST+RS P  IVHKARTNLG++IS+QKAWRAKEH++KIL GD VESY+LI  FFDKLVE 
Sbjct: 19  MSTNRSIPDEIVHKARTNLGINISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 78

Query: 61  IPATCTALEMDDSGHFKFCFMAFDASIDG 90
            P TCTALEMDDSGHFKFCFMAF ASI+G
Sbjct: 79  NPGTCTALEMDDSGHFKFCFMAFGASIEG 107

[Close]

BLAST of PI0017898 vs. NCBI nr
Match: KAA0064043.1 (protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa] >TYK26195.1 protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 7.1e-32
Identity = 70/89 (78.65%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 1   MSTDRSFPKAIVHKARTNLGVSISHQKAWRAKEHIIKILKGDVVESYSLIASFFDKLVEC 60
           MSTD S PK IVHKARTNLGV+IS+QKAWRAKEH++KIL GD  ESY+LI  FFDKLVE 
Sbjct: 24  MSTDHSIPKEIVHKARTNLGVNISYQKAWRAKEHMVKILHGDRAESYALIPRFFDKLVES 83

Query: 61  IPATCTALEMDDSGHFKFCFMAFDASIDG 90
            P TCTALEMDDSGHFKFCFM F ASI+G
Sbjct: 84  NPGTCTALEMDDSGHFKFCFMVFGASIEG 112

The following BLAST results are available for this feature:

BLAST of PI0017898 vs.


Match Name	E-value	Identity	Description

BLAST of PI0017898 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C7L7	1.8e-33	80.90	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BGP1	5.3e-33	79.78	MULE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7T2W2	1.2e-32	78.65	Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3BVN2	1.2e-32	78.65	Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7V7F3	3.4e-32	78.65	Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of PI0017898 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07957.1	3.8e-33	80.90	hypothetical protein E5676_scaffold265G00780 [Cucumis melo var. makuwa]	[more]
KAA0050206.1	1.1e-32	79.78	uncharacterized protein E6C27_scaffold355G00380 [Cucumis melo var. makuwa] >TYJ9...	[more]
TYK02872.1	2.4e-32	78.65	protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa]	[more]
KAA0037812.1	2.4e-32	78.65	protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa]	[more]
KAA0064043.1	7.1e-32	78.65	protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa] >TYK26195.1 protein F...	[more]

BLAST of PI0017898 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0017898.1	PI0017898.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding