Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCACAACGAAACAAATGGGCAAGTCCCATGTAGACCGATTGGTAGAGATTAAAGAGCAGATGCTCTACCTAGTGGAAGTTCCAGACGTCGTCCGCTTCTTGGAAACTCGAATTCAAGAAATTTCCGAGAAAATCGATGCTATTGATGCGGTAACCGATCGCCTCGACGAATTACCTATAAGTGAGCTATTGACAAGAGTTGACACTCTAGAAGCAAAAGCTGCTAGAACTGGTAACTACAAACGTGGGAATAGTTCAACGGGCTCTGTTGCCCACATAGAAGAACGGGTTGGCGAGCTAGATAGCTCCCAAAAGTCGATTGTTGAGCTGATAAATGACATGTCAGAGGATTTTCGTGCCGCTCTCGACGTTGTCAATGAGATCGCAGACGTAAGCACGAGAATGAACCTCATGATGCGAGTCATGGCAAACCAAGCTCCAGCTGAAGGAGCAATGCAAGTTAACAAAGTGAAGATCCCCGAACCCAAACCCTTCTGTGGGGCAAGGAATGCAAAAGCCTTGAAGAACTACATATTTGATCTCGAACAATACTTCCGGGCCACGAACACAGTTACAGAAGAAGCGAAAGTGACGTTAGCAACGATGCATCTAACTGAGAATGCAAAGTTGTGGTGGAGGTTCCGGTATGTCGAGATCCAAGAAGGACGATGTACGATAGACACCTAAGACAGTTTGAAGAAAGAACTACGCTCACAGTTCTTCCCCGAGAACGTTGAAATTCTTGCTCGATGGAAGTTACATAAACTGAAGCACACTGGCAACATTCGGGATTACGTGAAACAGTTTGCGGGACTGATGTTAGACATACAAGATATGTCCGAGAAAGACAAAGTTTTCTGTTTTGTCAAAAGGCTGAAACCATGGGTGAAGACCAAGCTATACGAACAGAGGGTCTAAGAACTCTCGTCAGCATACGCAGCGGCAGAGCGACTATCTGATCTATCCAATGACTCTCAAGATGCGAGACGTCATCAAAGTTCCTCATCTGGAGGAAACAAGAACAATCGTGCGAGTTCTCACAAAGCCGGAGGGGGAGATAAACGGTCTAGTGGTAATTGTAGGCCCTTCCAACCAAACATCGAAAACACAGGGCGAGGACAAAACCACCAAAATTCCCACAATCGTCCCTGCCTGTTTCATATGTAAGGGACCACACATGGCAAGAGAATGTCCGAATCGAATTGTCTTCAATGCCTTTCAGGCCGCCCTAACGTCGGACTCAGATGACAAGTGTAGTCAAATAGAGGGTGAAGACACCCAAACCGAAGAAGGTGATAAACCCATGATGGGGGCCTTGAAATTCCTATTGTCTCTCTAG
mRNA sequence
ATGTCCACAACGAAACAAATGGGCAAGTCCCATGTAGACCGATTGGTAGAGATTAAAGAGCAGATGCTCTACCTAGTGGAAGTTCCAGACGTCGTCCGCTTCTTGGAAACTCGAATTCAAGAAATTTCCGAGAAAATCGATGCTATTGATGCGGTAACCGATCGCCTCGACGAATTACCTATAAGTGAGCTATTGACAAGAGTTGACACTCTAGAAGCAAAAGCTGCTAGAACTGGTAACTACAAACGTGGGAATAGTTCAACGGGCTCTGTTGCCCACATAGAAGAACGGGTTGGCGAGCTAGATAGCTCCCAAAAGTCGATTGTTGAGCTGATAAATGACATGTCAGAGGATTTTCGTGCCGCTCTCGACGTTGTCAATGAGATCGCAGACCGGCAGAGCGACTATCTGATCTATCCAATGACTCTCAAGATGCGAGACGTCATCAAAGTTCCTCATCTGGAGGAAACAAGAACAATCGTGCGAGTTCTCACAAAGCCGGAGGGGGAGATAAACGGTCTAGTGGTAATTGTAGGCCCTTCCAACCAAACATCGAAAACACAGGGCGAGGACAAAACCACCAAAATTCCCACAATCGTCCCTGCCTGTTTCATATGTAAGGGACCACACATGGCAAGAGAATGTCCGAATCGAATTGTCTTCAATGCCTTTCAGGCCGCCCTAACGTCGGACTCAGATGACAAGTGTAGTCAAATAGAGGGTGAAGACACCCAAACCGAAGAAGGTGATAAACCCATGATGGGGGCCTTGAAATTCCTATTGTCTCTCTAG
Coding sequence (CDS)
ATGTCCACAACGAAACAAATGGGCAAGTCCCATGTAGACCGATTGGTAGAGATTAAAGAGCAGATGCTCTACCTAGTGGAAGTTCCAGACGTCGTCCGCTTCTTGGAAACTCGAATTCAAGAAATTTCCGAGAAAATCGATGCTATTGATGCGGTAACCGATCGCCTCGACGAATTACCTATAAGTGAGCTATTGACAAGAGTTGACACTCTAGAAGCAAAAGCTGCTAGAACTGGTAACTACAAACGTGGGAATAGTTCAACGGGCTCTGTTGCCCACATAGAAGAACGGGTTGGCGAGCTAGATAGCTCCCAAAAGTCGATTGTTGAGCTGATAAATGACATGTCAGAGGATTTTCGTGCCGCTCTCGACGTTGTCAATGAGATCGCAGACCGGCAGAGCGACTATCTGATCTATCCAATGACTCTCAAGATGCGAGACGTCATCAAAGTTCCTCATCTGGAGGAAACAAGAACAATCGTGCGAGTTCTCACAAAGCCGGAGGGGGAGATAAACGGTCTAGTGGTAATTGTAGGCCCTTCCAACCAAACATCGAAAACACAGGGCGAGGACAAAACCACCAAAATTCCCACAATCGTCCCTGCCTGTTTCATATGTAAGGGACCACACATGGCAAGAGAATGTCCGAATCGAATTGTCTTCAATGCCTTTCAGGCCGCCCTAACGTCGGACTCAGATGACAAGTGTAGTCAAATAGAGGGTGAAGACACCCAAACCGAAGAAGGTGATAAACCCATGATGGGGGCCTTGAAATTCCTATTGTCTCTCTAG
Protein sequence
MSTTKQMGKSHVDRLVEIKEQMLYLVEVPDVVRFLETRIQEISEKIDAIDAVTDRLDELPISELLTRVDTLEAKAARTGNYKRGNSSTGSVAHIEERVGELDSSQKSIVELINDMSEDFRAALDVVNEIADRQSDYLIYPMTLKMRDVIKVPHLEETRTIVRVLTKPEGEINGLVVIVGPSNQTSKTQGEDKTTKIPTIVPACFICKGPHMARECPNRIVFNAFQAALTSDSDDKCSQIEGEDTQTEEGDKPMMGALKFLLSL
Homology
BLAST of PI0017896 vs. ExPASy TrEMBL
Match:
A0A5D3B9T5 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00320 PE=4 SV=1)
HSP 1 Score: 200.3 bits (508), Expect = 1.0e-47
Identity = 149/364 (40.93%), Postives = 186/364 (51.10%), Query Frame = 0
Query: 1 MSTTKQMGKSHVDRLVEIKEQMLYLVEVPDVVRFLETRIQEISEKIDAIDAVTDRLDELP 60
MS++ GK+ DRLVE++EQMLYLVEVP+ +R+LE+R+ EISEK + IDAV R++
Sbjct: 1 MSSSNPSGKAQKDRLVELEEQMLYLVEVPNSIRYLESRLDEISEKTNTIDAVAGRVEGFL 60
Query: 61 ISELLTRVDTLEA--KAARTGNYKRGNSSTGSVAHIEERVGELDSSQKSIVELINDMSED 120
I EL+TRVD LE RT NY+RG+SSTGSVAHIEERV ELDSSQK+++E+IN MSED
Sbjct: 61 IQELMTRVDALETTINIRRTVNYERGDSSTGSVAHIEERVQELDSSQKALLEMINGMSED 120
Query: 121 FRAALDVV-NEIADRQSDYLIYPMTLKMRDV--------------IKVP----------- 180
FRA LDVV NEIAD + ++L MR + +K+P
Sbjct: 121 FRATLDVVRNEIADVNA-----RLSLTMRAMANQAPAGGAIPVSRVKIPKPKPFCGARDA 180
Query: 181 -------------------------------HLEETRTI---VRVLTKPEGEINGLVVIV 240
HL E + R + +G L +
Sbjct: 181 KALENYIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDMQKGP-ERLFDLS 240
Query: 241 GPSNQT------------------SKTQGEDK---------------------TTKIPTI 264
S T KT G D+ +
Sbjct: 241 NDSQDTRRHPSSSSGGSRNNRPSSPKTTGGDRRFNGDRRSHQSNTGNSWRGPSNQNVSNR 300
BLAST of PI0017896 vs. ExPASy TrEMBL
Match:
A0A5D3DTJ0 (Asp_protease domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003310 PE=4 SV=1)
HSP 1 Score: 198.7 bits (504), Expect = 2.9e-47
Identity = 123/258 (47.67%), Postives = 160/258 (62.02%), Query Frame = 0
Query: 22 MLYLVEVPDVVRFLETRIQEISEKIDAIDAVTDRLDELPISELLTRVDTLEAKAARTGNY 81
MLYLVEV D +RFLE+R++EI+EK D IDA+ R++ LPI ELL RV+TL+ RT ++
Sbjct: 1 MLYLVEVLDSIRFLESRLEEIAEKTDMIDAIVGRVEGLPIQELLARVNTLKGNVGRTSSH 60
Query: 82 KRGNSSTGSVAHIEERVGELDSSQKSIVELINDMSEDFRAALDVV-NEIADRQS--DYLI 141
+RG+SS GSVAHIEERV ELDSSQK+++E++NDM EDFRA LDVV NEIAD + D I
Sbjct: 61 ERGDSSMGSVAHIEERVQELDSSQKTLLEMMNDMFEDFRATLDVVRNEIADMNARLDLTI 120
Query: 142 YPMTLKMR-------DVIKVPH------LEETRTIVRVLTKPEGEINGLVVIVGPSNQTS 201
M + ++K+P + + + + E + + T
Sbjct: 121 RAMENQALAGGAIPVSIVKIPKPKPFCGARDVKALENYIFDLEQYFRVTNTVTEEAKVTL 180
Query: 202 KTQGEDKTTKIPTIVPACFICKGPHMARECPNRIVFNAFQAALTSDSDDKCSQIEGEDTQ 261
T + K+ CFICKGP +AREC N+ FNAFQA+L SDS+D+ Q E E Q
Sbjct: 181 ATMHLSEDVKL-WWRSRCFICKGPQLARECLNKTAFNAFQASLASDSNDRLGQTEREVDQ 240
Query: 262 TEEGDKPMMGALKFLLSL 264
TEE D P MGALKFL SL
Sbjct: 241 TEEVDNPRMGALKFLSSL 257
BLAST of PI0017896 vs. ExPASy TrEMBL
Match:
A0A5A7SQC7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43053G00490 PE=4 SV=1)
HSP 1 Score: 193.4 bits (490), Expect = 1.2e-45
Identity = 151/423 (35.70%), Postives = 189/423 (44.68%), Query Frame = 0
Query: 1 MSTTKQMGKSHVDRLVEIKEQMLYLVEVPDVVRFLETRIQEISEKIDAIDAVTDRLDELP 60
MS++ GK+ DRL+E++EQMLYLVEVPD +R+LE+R++EISEK + IDAV R++ P
Sbjct: 1 MSSSNPSGKAQKDRLIELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60
Query: 61 ISELLTRVDTLE--AKAARTGNYKRGNSSTGSVAHIEERVGELDSSQKSIVELINDMSED 120
I EL+TRVD LE RT NY+RG+SSTGSVAHIEERV ELDSSQK+++E+IN MSED
Sbjct: 61 IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120
Query: 121 FRAALDVV-NEIAD---------------------------------------------- 180
FRA LDVV NEIAD
Sbjct: 121 FRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALEN 180
Query: 181 ---------------------------------------------------------RQS 240
R+
Sbjct: 181 YIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKREL 240
Query: 241 DYLIYPMTLKMRDVIKVPHLEETRTI---------------VRVLTKPEGEINGLVVIVG 264
+P +++ K+ L+ T +I V+ LT L +
Sbjct: 241 RSQFFPENVEILARRKLRELKHTGSIREIEPWAKTKLYEQRVQDLTSAYAAAERLFDLSN 300
BLAST of PI0017896 vs. ExPASy TrEMBL
Match:
A0A5D3CAF3 (Endo-1,4-beta-xylanase A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00330 PE=4 SV=1)
HSP 1 Score: 188.7 bits (478), Expect = 3.0e-44
Identity = 126/294 (42.86%), Postives = 177/294 (60.20%), Query Frame = 0
Query: 1 MSTTKQMGKSHVDRLVEIKEQMLYLVEVPDVVRFLETRIQEISEKIDAIDAVTDRLDELP 60
MS+ GK+ DRLVE++EQMLYLV+VP +R+LE+R+ EISEK D IDAV R++ L
Sbjct: 1 MSSANPSGKAQKDRLVELEEQMLYLVKVPHSIRYLESRLNEISEKTDIIDAVAGRVEGLQ 60
Query: 61 ISELLTRVDTLEAKAARTGNYKRGNSSTGSVAHIEERVGELDSSQKSIVELINDMSEDFR 120
+ ELL RVDTLE RT NY+ G+SS+G VAH+E RV LDSSQK+++E+IN M EDF+
Sbjct: 61 LQELLARVDTLEENVGRTVNYEYGDSSSGFVAHMEGRVNVLDSSQKTLLEMINSMLEDFQ 120
Query: 121 AALDVV-NEIADRQSDYLIYPMTLKMRDVI--KVP---HLEETRTI---VRVLTKPEGEI 180
A LDVV +EIAD + + + + I VP + + T T+ +V
Sbjct: 121 ATLDVVRSEIADVNTRLSLTMRAMANQAPIGGAVPVTKYFKATNTVTEEAKVTLATMYLC 180
Query: 181 NGLVVIVGPSNQTS-------KTQGEDKTT--------------KIPTIVP-ACFICKGP 240
+ S+Q+S K G+D+ + + PT P +CFIC P
Sbjct: 181 EDAKLWWRNSSQSSPKAVRGDKRSGKDRRSYQSTTENTWRRPNDRSPTKRPLSCFICWKP 240
Query: 241 HMARECPNRIVFNAFQAALTSDSDDKCSQIEGEDTQTEEGDKPMMGALKFLLSL 264
H+AREC N++ F+AFQA+L +DSDDK +Q E E Q + +K +GA+K++ SL
Sbjct: 241 HLARECLNKVDFHAFQASLIADSDDKSNQAEDEMGQIDRSEKTRIGAIKYMSSL 294
BLAST of PI0017896 vs. ExPASy TrEMBL
Match:
A0A5D3DEJ3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00860 PE=4 SV=1)
HSP 1 Score: 188.7 bits (478), Expect = 3.0e-44
Identity = 140/371 (37.74%), Postives = 184/371 (49.60%), Query Frame = 0
Query: 1 MSTTKQMGKSHVDRLVEIKEQMLYLVEVPDVVRFLETRIQEISEKIDAIDAVTDRLDELP 60
MS+ GK+ DRLVE++EQMLYLVEV D +R+LE+ + EISEK + IDAV R++ P
Sbjct: 1 MSSLNPSGKAQKDRLVELEEQMLYLVEVLDSIRYLESHLDEISEKTNTIDAVAGRVEGFP 60
Query: 61 ISELLTRVDTLEA--KAARTGNYKRGNSSTGSVAHIEERVGELDSSQKSIVELINDMSED 120
I EL+TRVD LE RT NY+RG+SST SVAHIEERV ELDSSQK+++E+IN MSED
Sbjct: 61 IQELMTRVDALETTINIGRTVNYERGDSSTSSVAHIEERVQELDSSQKTLLEMINSMSED 120
Query: 121 FRAALDVV-NEIADRQS-----------DYLI---------YPMTLKMRDVIKVPHLEET 180
FRA L+VV NEIAD + +Y+ +T + + + + HL E
Sbjct: 121 FRATLNVVRNEIADVNARLSLTIREGLENYIFDLEQYFKATNTVTEEAKVTLAMMHLSED 180
Query: 181 RTIVRVLTKPEGEINGLVVIV--------------------------------------- 240
+ + + + GL++ +
Sbjct: 181 AKLWWSIREYVKQFAGLMLDIRDMSEKDKVFCFVKGLKPWAKTKLYEQRVQDLTSAYAAA 240
Query: 241 ---------------GPSNQTS----------KTQGEDK--------------------- 264
PS+ + KT G D+
Sbjct: 241 ERLFDLSNDFQDTRRHPSSSSGGSRNNRPSSPKTTGGDRRFNGDRRSHQSNTGNSWRGPS 300
BLAST of PI0017896 vs. NCBI nr
Match:
KAA0063458.1 (uncharacterized protein E6C27_scaffold977G00440 [Cucumis melo var. makuwa] >TYJ95769.1 uncharacterized protein E5676_scaffold110G00320 [Cucumis melo var. makuwa])
HSP 1 Score: 200.3 bits (508), Expect = 2.1e-47
Identity = 149/364 (40.93%), Postives = 186/364 (51.10%), Query Frame = 0
Query: 1 MSTTKQMGKSHVDRLVEIKEQMLYLVEVPDVVRFLETRIQEISEKIDAIDAVTDRLDELP 60
MS++ GK+ DRLVE++EQMLYLVEVP+ +R+LE+R+ EISEK + IDAV R++
Sbjct: 1 MSSSNPSGKAQKDRLVELEEQMLYLVEVPNSIRYLESRLDEISEKTNTIDAVAGRVEGFL 60
Query: 61 ISELLTRVDTLEA--KAARTGNYKRGNSSTGSVAHIEERVGELDSSQKSIVELINDMSED 120
I EL+TRVD LE RT NY+RG+SSTGSVAHIEERV ELDSSQK+++E+IN MSED
Sbjct: 61 IQELMTRVDALETTINIRRTVNYERGDSSTGSVAHIEERVQELDSSQKALLEMINGMSED 120
Query: 121 FRAALDVV-NEIADRQSDYLIYPMTLKMRDV--------------IKVP----------- 180
FRA LDVV NEIAD + ++L MR + +K+P
Sbjct: 121 FRATLDVVRNEIADVNA-----RLSLTMRAMANQAPAGGAIPVSRVKIPKPKPFCGARDA 180
Query: 181 -------------------------------HLEETRTI---VRVLTKPEGEINGLVVIV 240
HL E + R + +G L +
Sbjct: 181 KALENYIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDMQKGP-ERLFDLS 240
Query: 241 GPSNQT------------------SKTQGEDK---------------------TTKIPTI 264
S T KT G D+ +
Sbjct: 241 NDSQDTRRHPSSSSGGSRNNRPSSPKTTGGDRRFNGDRRSHQSNTGNSWRGPSNQNVSNR 300
BLAST of PI0017896 vs. NCBI nr
Match:
KAA0062302.1 (uncharacterized protein E6C27_scaffold154G00490 [Cucumis melo var. makuwa] >TYK26675.1 uncharacterized protein E5676_scaffold313G003310 [Cucumis melo var. makuwa])
HSP 1 Score: 198.7 bits (504), Expect = 6.1e-47
Identity = 123/258 (47.67%), Postives = 160/258 (62.02%), Query Frame = 0
Query: 22 MLYLVEVPDVVRFLETRIQEISEKIDAIDAVTDRLDELPISELLTRVDTLEAKAARTGNY 81
MLYLVEV D +RFLE+R++EI+EK D IDA+ R++ LPI ELL RV+TL+ RT ++
Sbjct: 1 MLYLVEVLDSIRFLESRLEEIAEKTDMIDAIVGRVEGLPIQELLARVNTLKGNVGRTSSH 60
Query: 82 KRGNSSTGSVAHIEERVGELDSSQKSIVELINDMSEDFRAALDVV-NEIADRQS--DYLI 141
+RG+SS GSVAHIEERV ELDSSQK+++E++NDM EDFRA LDVV NEIAD + D I
Sbjct: 61 ERGDSSMGSVAHIEERVQELDSSQKTLLEMMNDMFEDFRATLDVVRNEIADMNARLDLTI 120
Query: 142 YPMTLKMR-------DVIKVPH------LEETRTIVRVLTKPEGEINGLVVIVGPSNQTS 201
M + ++K+P + + + + E + + T
Sbjct: 121 RAMENQALAGGAIPVSIVKIPKPKPFCGARDVKALENYIFDLEQYFRVTNTVTEEAKVTL 180
Query: 202 KTQGEDKTTKIPTIVPACFICKGPHMARECPNRIVFNAFQAALTSDSDDKCSQIEGEDTQ 261
T + K+ CFICKGP +AREC N+ FNAFQA+L SDS+D+ Q E E Q
Sbjct: 181 ATMHLSEDVKL-WWRSRCFICKGPQLARECLNKTAFNAFQASLASDSNDRLGQTEREVDQ 240
Query: 262 TEEGDKPMMGALKFLLSL 264
TEE D P MGALKFL SL
Sbjct: 241 TEEVDNPRMGALKFLSSL 257
BLAST of PI0017896 vs. NCBI nr
Match:
KAA0032583.1 (reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 193.4 bits (490), Expect = 2.5e-45
Identity = 151/423 (35.70%), Postives = 189/423 (44.68%), Query Frame = 0
Query: 1 MSTTKQMGKSHVDRLVEIKEQMLYLVEVPDVVRFLETRIQEISEKIDAIDAVTDRLDELP 60
MS++ GK+ DRL+E++EQMLYLVEVPD +R+LE+R++EISEK + IDAV R++ P
Sbjct: 1 MSSSNPSGKAQKDRLIELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60
Query: 61 ISELLTRVDTLE--AKAARTGNYKRGNSSTGSVAHIEERVGELDSSQKSIVELINDMSED 120
I EL+TRVD LE RT NY+RG+SSTGSVAHIEERV ELDSSQK+++E+IN MSED
Sbjct: 61 IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120
Query: 121 FRAALDVV-NEIAD---------------------------------------------- 180
FRA LDVV NEIAD
Sbjct: 121 FRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALEN 180
Query: 181 ---------------------------------------------------------RQS 240
R+
Sbjct: 181 YIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKREL 240
Query: 241 DYLIYPMTLKMRDVIKVPHLEETRTI---------------VRVLTKPEGEINGLVVIVG 264
+P +++ K+ L+ T +I V+ LT L +
Sbjct: 241 RSQFFPENVEILARRKLRELKHTGSIREIEPWAKTKLYEQRVQDLTSAYAAAERLFDLSN 300
BLAST of PI0017896 vs. NCBI nr
Match:
KAA0060348.1 (reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 188.7 bits (478), Expect = 6.3e-44
Identity = 140/371 (37.74%), Postives = 184/371 (49.60%), Query Frame = 0
Query: 1 MSTTKQMGKSHVDRLVEIKEQMLYLVEVPDVVRFLETRIQEISEKIDAIDAVTDRLDELP 60
MS+ GK+ DRLVE++EQMLYLVEV D +R+LE+ + EISEK + IDAV R++ P
Sbjct: 1 MSSLNPSGKAQKDRLVELEEQMLYLVEVLDSIRYLESHLDEISEKTNTIDAVAGRVEGFP 60
Query: 61 ISELLTRVDTLEA--KAARTGNYKRGNSSTGSVAHIEERVGELDSSQKSIVELINDMSED 120
I EL+TRVD LE RT NY+RG+SST SVAHIEERV ELDSSQK+++E+IN MSED
Sbjct: 61 IQELMTRVDALETTINIGRTVNYERGDSSTSSVAHIEERVQELDSSQKTLLEMINSMSED 120
Query: 121 FRAALDVV-NEIADRQS-----------DYLI---------YPMTLKMRDVIKVPHLEET 180
FRA L+VV NEIAD + +Y+ +T + + + + HL E
Sbjct: 121 FRATLNVVRNEIADVNARLSLTIREGLENYIFDLEQYFKATNTVTEEAKVTLAMMHLSED 180
Query: 181 RTIVRVLTKPEGEINGLVVIV--------------------------------------- 240
+ + + + GL++ +
Sbjct: 181 AKLWWSIREYVKQFAGLMLDIRDMSEKDKVFCFVKGLKPWAKTKLYEQRVQDLTSAYAAA 240
Query: 241 ---------------GPSNQTS----------KTQGEDK--------------------- 264
PS+ + KT G D+
Sbjct: 241 ERLFDLSNDFQDTRRHPSSSSGGSRNNRPSSPKTTGGDRRFNGDRRSHQSNTGNSWRGPS 300
BLAST of PI0017896 vs. NCBI nr
Match:
KAA0047605.1 (Endo-1,4-beta-xylanase A [Cucumis melo var. makuwa] >TYK08262.1 Endo-1,4-beta-xylanase A [Cucumis melo var. makuwa])
HSP 1 Score: 188.7 bits (478), Expect = 6.3e-44
Identity = 126/294 (42.86%), Postives = 177/294 (60.20%), Query Frame = 0
Query: 1 MSTTKQMGKSHVDRLVEIKEQMLYLVEVPDVVRFLETRIQEISEKIDAIDAVTDRLDELP 60
MS+ GK+ DRLVE++EQMLYLV+VP +R+LE+R+ EISEK D IDAV R++ L
Sbjct: 1 MSSANPSGKAQKDRLVELEEQMLYLVKVPHSIRYLESRLNEISEKTDIIDAVAGRVEGLQ 60
Query: 61 ISELLTRVDTLEAKAARTGNYKRGNSSTGSVAHIEERVGELDSSQKSIVELINDMSEDFR 120
+ ELL RVDTLE RT NY+ G+SS+G VAH+E RV LDSSQK+++E+IN M EDF+
Sbjct: 61 LQELLARVDTLEENVGRTVNYEYGDSSSGFVAHMEGRVNVLDSSQKTLLEMINSMLEDFQ 120
Query: 121 AALDVV-NEIADRQSDYLIYPMTLKMRDVI--KVP---HLEETRTI---VRVLTKPEGEI 180
A LDVV +EIAD + + + + I VP + + T T+ +V
Sbjct: 121 ATLDVVRSEIADVNTRLSLTMRAMANQAPIGGAVPVTKYFKATNTVTEEAKVTLATMYLC 180
Query: 181 NGLVVIVGPSNQTS-------KTQGEDKTT--------------KIPTIVP-ACFICKGP 240
+ S+Q+S K G+D+ + + PT P +CFIC P
Sbjct: 181 EDAKLWWRNSSQSSPKAVRGDKRSGKDRRSYQSTTENTWRRPNDRSPTKRPLSCFICWKP 240
Query: 241 HMARECPNRIVFNAFQAALTSDSDDKCSQIEGEDTQTEEGDKPMMGALKFLLSL 264
H+AREC N++ F+AFQA+L +DSDDK +Q E E Q + +K +GA+K++ SL
Sbjct: 241 HLARECLNKVDFHAFQASLIADSDDKSNQAEDEMGQIDRSEKTRIGAIKYMSSL 294
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3B9T5 | 1.0e-47 | 40.93 | Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... | [more] |
A0A5D3DTJ0 | 2.9e-47 | 47.67 | Asp_protease domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN... | [more] |
A0A5A7SQC7 | 1.2e-45 | 35.70 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43... | [more] |
A0A5D3CAF3 | 3.0e-44 | 42.86 | Endo-1,4-beta-xylanase A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... | [more] |
A0A5D3DEJ3 | 3.0e-44 | 37.74 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold31... | [more] |
Match Name | E-value | Identity | Description | |
KAA0063458.1 | 2.1e-47 | 40.93 | uncharacterized protein E6C27_scaffold977G00440 [Cucumis melo var. makuwa] >TYJ9... | [more] |
KAA0062302.1 | 6.1e-47 | 47.67 | uncharacterized protein E6C27_scaffold154G00490 [Cucumis melo var. makuwa] >TYK2... | [more] |
KAA0032583.1 | 2.5e-45 | 35.70 | reverse transcriptase [Cucumis melo var. makuwa] | [more] |
KAA0060348.1 | 6.3e-44 | 37.74 | reverse transcriptase [Cucumis melo var. makuwa] | [more] |
KAA0047605.1 | 6.3e-44 | 42.86 | Endo-1,4-beta-xylanase A [Cucumis melo var. makuwa] >TYK08262.1 Endo-1,4-beta-xy... | [more] |
Match Name | E-value | Identity | Description | |