Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCAAAATAATTCGCACCAGTTTATGTAGGCTAGAGGATTGGGGATTGCCTTATGAGTCAGACGTGGCAAATGAAAAAATTCATGAAGCTGTTGAGGCATGGCAATTCGTAAAGAAAATAAAGAGCTTGCGAAATTGTAAGAGTACTACAAAACAGTATGATAATTGGAGAGCATTTAAAGATGTGATTAAAGTTAGTGCTATGTCAGAATCTTCAGTTCCAAGCATAGTGTTGAAGAAAAATCATGACGATGGAGAGAGAGATTTGAAGAGGTTAAGAGAAATGAATTGTGTTTTGGCAACAGAAAACGAAAAGTTGAGAGAAGAAGTCAAAAGATGGGTCCAACAAGCTGTTAGTGCTCAAAGATATTTGGATGAGGCAAAACGAAAGCAATCAAAGTTGGTGAAGGATAACGATTCTTTAGACATTGAGGTGATCCAAGTGAGAAAAAAGAATAAGAGATTATTAAGGAACATTATTGATTTGGATGAAGAAACATAAGCTAAAAAGGTATTCATTACAATTTTAAAATAGGAAATAGAAAGATTGAATGGGGTTGCTATAAAATTCCTAAATGCACTACATGAACAAGCCACATCATCTCAAAAGATCGCTGTAGAGGTCGAGGTTCTACAACAATCAGTTAAAAAATACAAGTCCCAACTTATGGAAGTGAAAAACATGAACAATTTGCTTCAAAAGAGATCACAACAGATGACTACACTCAGTTGA
mRNA sequence
ATGGTCAAAATAATTCGCACCAGTTTATGTAGGCTAGAGGATTGGGGATTGCCTTATGAGTCAGACGTGGCAAATGAAAAAATTCATGAAGCTGTTGAGGCATGGCAATTCGTAAAGAAAATAAAGAGCTTGCGAAATTGTAAGAGTACTACAAAACAGTATGATAATTGGAGAGCATTTAAAGATGTGATTAAAGTTAGTGCTATGTCAGAATCTTCAGTTCCAAGCATAGTGTTGAAGAAAAATCATGACGATGGAGAGAGAGATTTGAAGAGGTTAAGAGAAATGAATTGTGTTTTGGCAACAGAAAACGAAAAGTTGAGAGAAGAAGTCAAAAGATGGGTCCAACAAGCTGTTAGTGCTCAAAGATATTTGGATGAGGCAAAACGAAAGCAATCAAAGTTGGTGAAGGATAACGATTCTTTAGACATTGAGGTGATCCAAGAAATAGAAAGATTGAATGGGGTTGCTATAAAATTCCTAAATGCACTACATGAACAAGCCACATCATCTCAAAAGATCGCTGTAGAGGTCGAGGTTCTACAACAATCAGTTAAAAAATACAAGTCCCAACTTATGGAAGTGAAAAACATGAACAATTTGCTTCAAAAGAGATCACAACAGATGACTACACTCAGTTGA
Coding sequence (CDS)
ATGGTCAAAATAATTCGCACCAGTTTATGTAGGCTAGAGGATTGGGGATTGCCTTATGAGTCAGACGTGGCAAATGAAAAAATTCATGAAGCTGTTGAGGCATGGCAATTCGTAAAGAAAATAAAGAGCTTGCGAAATTGTAAGAGTACTACAAAACAGTATGATAATTGGAGAGCATTTAAAGATGTGATTAAAGTTAGTGCTATGTCAGAATCTTCAGTTCCAAGCATAGTGTTGAAGAAAAATCATGACGATGGAGAGAGAGATTTGAAGAGGTTAAGAGAAATGAATTGTGTTTTGGCAACAGAAAACGAAAAGTTGAGAGAAGAAGTCAAAAGATGGGTCCAACAAGCTGTTAGTGCTCAAAGATATTTGGATGAGGCAAAACGAAAGCAATCAAAGTTGGTGAAGGATAACGATTCTTTAGACATTGAGGTGATCCAAGAAATAGAAAGATTGAATGGGGTTGCTATAAAATTCCTAAATGCACTACATGAACAAGCCACATCATCTCAAAAGATCGCTGTAGAGGTCGAGGTTCTACAACAATCAGTTAAAAAATACAAGTCCCAACTTATGGAAGTGAAAAACATGAACAATTTGCTTCAAAAGAGATCACAACAGATGACTACACTCAGTTGA
Protein sequence
MVKIIRTSLCRLEDWGLPYESDVANEKIHEAVEAWQFVKKIKSLRNCKSTTKQYDNWRAFKDVIKVSAMSESSVPSIVLKKNHDDGERDLKRLREMNCVLATENEKLREEVKRWVQQAVSAQRYLDEAKRKQSKLVKDNDSLDIEVIQEIERLNGVAIKFLNALHEQATSSQKIAVEVEVLQQSVKKYKSQLMEVKNMNNLLQKRSQQMTTLS
Homology
BLAST of PI0017855 vs. ExPASy TrEMBL
Match:
A0A5A7SNY0 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G001110 PE=4 SV=1)
HSP 1 Score: 223.4 bits (568), Expect = 9.0e-55
Identity = 118/190 (62.11%), Postives = 153/190 (80.53%), Query Frame = 0
Query: 9 LCRLEDWGLPYESDVANEKIHEAVEAWQFVKKIKSLRNCKSTTKQYDNWRAFKDVIKVSA 68
+C LEDW YES++AN KIHEAVEAW+FVKK+KSLR+C+ TT+QYDNWRA ++ I ++A
Sbjct: 199 VCGLEDWEFSYESNIANNKIHEAVEAWKFVKKMKSLRHCEGTTEQYDNWRASRNGITINA 258
Query: 69 MSESSVPSIVLKKNHDDGERDLKRLREMNCVLATENEKLREEVKRWVQQAVSAQRYLDEA 128
MSES VP+I LKK HD E++LKRLREMNCV+ATENEKLREEVK+WVQQAV+ QR LDEA
Sbjct: 259 MSESLVPNIELKKYHDK-EKELKRLREMNCVMATENEKLREEVKKWVQQAVNTQRDLDEA 318
Query: 129 KRKQSKLVKDNDSLDIEVIQEIERLNGVAIKFLNALHEQATSSQKIAVEVEVLQQSVKKY 188
KRK +L K+NDSL+ E IQ + + N ++ + LHE+ ++K A+E+EVLQ S+K+Y
Sbjct: 319 KRKLLELEKENDSLNTEAIQ-VRKKNKRLLRNIANLHEE-IEAKKTAIEIEVLQHSIKEY 378
Query: 189 KSQLMEVKNM 199
KSQL+E K +
Sbjct: 379 KSQLIEAKKL 385
BLAST of PI0017855 vs. ExPASy TrEMBL
Match:
A0A5D3D0S2 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001090 PE=4 SV=1)
HSP 1 Score: 223.4 bits (568), Expect = 9.0e-55
Identity = 118/190 (62.11%), Postives = 153/190 (80.53%), Query Frame = 0
Query: 9 LCRLEDWGLPYESDVANEKIHEAVEAWQFVKKIKSLRNCKSTTKQYDNWRAFKDVIKVSA 68
+C LEDW YES++AN KIHEAVEAW+FVKK+KSLR+C+ TT+QYDNWRA ++ I ++A
Sbjct: 263 VCGLEDWEFSYESNIANNKIHEAVEAWKFVKKMKSLRHCEGTTEQYDNWRASRNGITINA 322
Query: 69 MSESSVPSIVLKKNHDDGERDLKRLREMNCVLATENEKLREEVKRWVQQAVSAQRYLDEA 128
MSES VP+I LKK HD E++LKRLREMNCV+ATENEKLREEVK+WVQQAV+ QR LDEA
Sbjct: 323 MSESLVPNIELKKYHDK-EKELKRLREMNCVMATENEKLREEVKKWVQQAVNTQRDLDEA 382
Query: 129 KRKQSKLVKDNDSLDIEVIQEIERLNGVAIKFLNALHEQATSSQKIAVEVEVLQQSVKKY 188
KRK +L K+NDSL+ E IQ + + N ++ + LHE+ ++K A+E+EVLQ S+K+Y
Sbjct: 383 KRKLLELEKENDSLNTEAIQ-VRKKNKRLLRNIANLHEE-IEAKKTAIEIEVLQHSIKEY 442
Query: 189 KSQLMEVKNM 199
KSQL+E K +
Sbjct: 443 KSQLIEAKKL 449
BLAST of PI0017855 vs. ExPASy TrEMBL
Match:
A0A5A7SUT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00100 PE=4 SV=1)
HSP 1 Score: 186.8 bits (473), Expect = 9.3e-44
Identity = 105/196 (53.57%), Postives = 133/196 (67.86%), Query Frame = 0
Query: 9 LCRLEDWGLPYESDVANEKIHEAVEAWQFVKKIKSLRNCKSTTKQYDNWRAFKDVIKVSA 68
+C LEDW YES++AN+KIHEAVEAW+FVKK+KSLR+C+ TT+QYDNWRA ++ I ++
Sbjct: 337 VCGLEDWEFSYESNIANDKIHEAVEAWKFVKKMKSLRHCEGTTEQYDNWRASRNGITMNP 396
Query: 69 MSESSVPSIVLKKNHDDGERDLKRLREMNCVLATENEKLREEVKRWVQQAVSAQRYLDEA 128
MSES VP+I LKK HD E++LKRLREMNCVLATENEKLREEVK+WVQQAV+ R LDEA
Sbjct: 397 MSESLVPNIELKKYHDK-EKELKRLREMNCVLATENEKLREEVKKWVQQAVNTPRDLDEA 456
Query: 129 KRKQSKLVKDNDSLDIEVIQEIERLNGVAIKFLNALHEQATSSQKIAVEVEVLQQSVKKY 188
KRK+ + A+ +EVLQ S+++Y
Sbjct: 457 KRKR---------------------------------------LETAMGIEVLQHSIEEY 492
Query: 189 KSQLMEVKNMNNLLQK 205
KSQL+E ++ NN LQK
Sbjct: 517 KSQLIEAESKNNFLQK 492
BLAST of PI0017855 vs. ExPASy TrEMBL
Match:
A0A1S3CLQ1 (glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=4 SV=1)
HSP 1 Score: 147.9 bits (372), Expect = 4.8e-32
Identity = 90/149 (60.40%), Postives = 112/149 (75.17%), Query Frame = 0
Query: 69 MSESSVPSIVLKKNHDDGERDLKRLREMNCVLATENEKLREEVKRWVQQAVSAQRYLDEA 128
MSES VP+I LKK HD E++LKRLREMNCVLATENEKLREEVK+WVQQAV+ QR LDEA
Sbjct: 1 MSESLVPNIELKKYHDQ-EKELKRLREMNCVLATENEKLREEVKKWVQQAVNTQRDLDEA 60
Query: 129 KRKQSKLVKDNDSLDIEVIQEIER----LNGVA---------IKFLNALHEQATSSQKIA 188
KRK+ +L K+NDSL+ E IQ ++ L +A +F NALHEQA SSQ+ A
Sbjct: 61 KRKRLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAEKEFQNALHEQAISSQQTA 120
Query: 189 VEVEVLQQSVKKYKSQLMEVKNMNNLLQK 205
+ +EVLQ S+++YKSQL+E ++ NN LQK
Sbjct: 121 MGIEVLQHSIEEYKSQLIEAESKNNFLQK 148
BLAST of PI0017855 vs. ExPASy TrEMBL
Match:
A0A5A7SM49 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold23528G00010 PE=4 SV=1)
HSP 1 Score: 126.7 bits (317), Expect = 1.1e-25
Identity = 75/140 (53.57%), Postives = 94/140 (67.14%), Query Frame = 0
Query: 96 MNCVLATENEKLREEVKRWVQQAVSAQRYLDEAKRKQSKLVKDNDSLDIEVIQ------- 155
MNCVLATENEKLREEVK+WVQQAV+ QR LDEAKRK+ +L K+NDSL+ E IQ
Sbjct: 1 MNCVLATENEKLREEVKKWVQQAVNIQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60
Query: 156 ------------------------EIERLNGVAIKFLNALHEQATSSQKIAVEVEVLQQS 205
EIE+LNG+ ++F NALHEQA SSQ+ A+ +EVLQ S
Sbjct: 61 LLRNIANLHEEIEAEKVCITDLKHEIEKLNGITLEFQNALHEQAISSQQTAMGIEVLQHS 120
BLAST of PI0017855 vs. NCBI nr
Match:
TYK16834.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 223.4 bits (568), Expect = 1.9e-54
Identity = 118/190 (62.11%), Postives = 153/190 (80.53%), Query Frame = 0
Query: 9 LCRLEDWGLPYESDVANEKIHEAVEAWQFVKKIKSLRNCKSTTKQYDNWRAFKDVIKVSA 68
+C LEDW YES++AN KIHEAVEAW+FVKK+KSLR+C+ TT+QYDNWRA ++ I ++A
Sbjct: 263 VCGLEDWEFSYESNIANNKIHEAVEAWKFVKKMKSLRHCEGTTEQYDNWRASRNGITINA 322
Query: 69 MSESSVPSIVLKKNHDDGERDLKRLREMNCVLATENEKLREEVKRWVQQAVSAQRYLDEA 128
MSES VP+I LKK HD E++LKRLREMNCV+ATENEKLREEVK+WVQQAV+ QR LDEA
Sbjct: 323 MSESLVPNIELKKYHDK-EKELKRLREMNCVMATENEKLREEVKKWVQQAVNTQRDLDEA 382
Query: 129 KRKQSKLVKDNDSLDIEVIQEIERLNGVAIKFLNALHEQATSSQKIAVEVEVLQQSVKKY 188
KRK +L K+NDSL+ E IQ + + N ++ + LHE+ ++K A+E+EVLQ S+K+Y
Sbjct: 383 KRKLLELEKENDSLNTEAIQ-VRKKNKRLLRNIANLHEE-IEAKKTAIEIEVLQHSIKEY 442
Query: 189 KSQLMEVKNM 199
KSQL+E K +
Sbjct: 443 KSQLIEAKKL 449
BLAST of PI0017855 vs. NCBI nr
Match:
KAA0032013.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 223.4 bits (568), Expect = 1.9e-54
Identity = 118/190 (62.11%), Postives = 153/190 (80.53%), Query Frame = 0
Query: 9 LCRLEDWGLPYESDVANEKIHEAVEAWQFVKKIKSLRNCKSTTKQYDNWRAFKDVIKVSA 68
+C LEDW YES++AN KIHEAVEAW+FVKK+KSLR+C+ TT+QYDNWRA ++ I ++A
Sbjct: 199 VCGLEDWEFSYESNIANNKIHEAVEAWKFVKKMKSLRHCEGTTEQYDNWRASRNGITINA 258
Query: 69 MSESSVPSIVLKKNHDDGERDLKRLREMNCVLATENEKLREEVKRWVQQAVSAQRYLDEA 128
MSES VP+I LKK HD E++LKRLREMNCV+ATENEKLREEVK+WVQQAV+ QR LDEA
Sbjct: 259 MSESLVPNIELKKYHDK-EKELKRLREMNCVMATENEKLREEVKKWVQQAVNTQRDLDEA 318
Query: 129 KRKQSKLVKDNDSLDIEVIQEIERLNGVAIKFLNALHEQATSSQKIAVEVEVLQQSVKKY 188
KRK +L K+NDSL+ E IQ + + N ++ + LHE+ ++K A+E+EVLQ S+K+Y
Sbjct: 319 KRKLLELEKENDSLNTEAIQ-VRKKNKRLLRNIANLHEE-IEAKKTAIEIEVLQHSIKEY 378
Query: 189 KSQLMEVKNM 199
KSQL+E K +
Sbjct: 379 KSQLIEAKKL 385
BLAST of PI0017855 vs. NCBI nr
Match:
KAA0033221.1 (uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa])
HSP 1 Score: 186.8 bits (473), Expect = 1.9e-43
Identity = 105/196 (53.57%), Postives = 133/196 (67.86%), Query Frame = 0
Query: 9 LCRLEDWGLPYESDVANEKIHEAVEAWQFVKKIKSLRNCKSTTKQYDNWRAFKDVIKVSA 68
+C LEDW YES++AN+KIHEAVEAW+FVKK+KSLR+C+ TT+QYDNWRA ++ I ++
Sbjct: 337 VCGLEDWEFSYESNIANDKIHEAVEAWKFVKKMKSLRHCEGTTEQYDNWRASRNGITMNP 396
Query: 69 MSESSVPSIVLKKNHDDGERDLKRLREMNCVLATENEKLREEVKRWVQQAVSAQRYLDEA 128
MSES VP+I LKK HD E++LKRLREMNCVLATENEKLREEVK+WVQQAV+ R LDEA
Sbjct: 397 MSESLVPNIELKKYHDK-EKELKRLREMNCVLATENEKLREEVKKWVQQAVNTPRDLDEA 456
Query: 129 KRKQSKLVKDNDSLDIEVIQEIERLNGVAIKFLNALHEQATSSQKIAVEVEVLQQSVKKY 188
KRK+ + A+ +EVLQ S+++Y
Sbjct: 457 KRKR---------------------------------------LETAMGIEVLQHSIEEY 492
Query: 189 KSQLMEVKNMNNLLQK 205
KSQL+E ++ NN LQK
Sbjct: 517 KSQLIEAESKNNFLQK 492
BLAST of PI0017855 vs. NCBI nr
Match:
XP_008464352.1 (PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo])
HSP 1 Score: 147.9 bits (372), Expect = 9.9e-32
Identity = 90/149 (60.40%), Postives = 112/149 (75.17%), Query Frame = 0
Query: 69 MSESSVPSIVLKKNHDDGERDLKRLREMNCVLATENEKLREEVKRWVQQAVSAQRYLDEA 128
MSES VP+I LKK HD E++LKRLREMNCVLATENEKLREEVK+WVQQAV+ QR LDEA
Sbjct: 1 MSESLVPNIELKKYHDQ-EKELKRLREMNCVLATENEKLREEVKKWVQQAVNTQRDLDEA 60
Query: 129 KRKQSKLVKDNDSLDIEVIQEIER----LNGVA---------IKFLNALHEQATSSQKIA 188
KRK+ +L K+NDSL+ E IQ ++ L +A +F NALHEQA SSQ+ A
Sbjct: 61 KRKRLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAEKEFQNALHEQAISSQQTA 120
Query: 189 VEVEVLQQSVKKYKSQLMEVKNMNNLLQK 205
+ +EVLQ S+++YKSQL+E ++ NN LQK
Sbjct: 121 MGIEVLQHSIEEYKSQLIEAESKNNFLQK 148
BLAST of PI0017855 vs. NCBI nr
Match:
KAA0025321.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 126.7 bits (317), Expect = 2.4e-25
Identity = 75/140 (53.57%), Postives = 94/140 (67.14%), Query Frame = 0
Query: 96 MNCVLATENEKLREEVKRWVQQAVSAQRYLDEAKRKQSKLVKDNDSLDIEVIQ------- 155
MNCVLATENEKLREEVK+WVQQAV+ QR LDEAKRK+ +L K+NDSL+ E IQ
Sbjct: 1 MNCVLATENEKLREEVKKWVQQAVNIQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60
Query: 156 ------------------------EIERLNGVAIKFLNALHEQATSSQKIAVEVEVLQQS 205
EIE+LNG+ ++F NALHEQA SSQ+ A+ +EVLQ S
Sbjct: 61 LLRNIANLHEEIEAEKVCITDLKHEIEKLNGITLEFQNALHEQAISSQQTAMGIEVLQHS 120
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7SNY0 | 9.0e-55 | 62.11 | Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
A0A5D3D0S2 | 9.0e-55 | 62.11 | Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
A0A5A7SUT0 | 9.3e-44 | 53.57 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84... | [more] |
A0A1S3CLQ1 | 4.8e-32 | 60.40 | glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=... | [more] |
A0A5A7SM49 | 1.1e-25 | 53.57 | Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
Match Name | E-value | Identity | Description | |
TYK16834.1 | 1.9e-54 | 62.11 | glial fibrillary acidic protein-like [Cucumis melo var. makuwa] | [more] |
KAA0032013.1 | 1.9e-54 | 62.11 | glial fibrillary acidic protein-like [Cucumis melo var. makuwa] | [more] |
KAA0033221.1 | 1.9e-43 | 53.57 | uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa] | [more] |
XP_008464352.1 | 9.9e-32 | 60.40 | PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo] | [more] |
KAA0025321.1 | 2.4e-25 | 53.57 | glial fibrillary acidic protein-like [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |