PI0017771 (gene) Melon (PI 482460) v1

Overview


Name	PI0017771
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	SWR1 complex subunit 6
Location	chr11: 7542633 .. 7545333 (+)
RNA-Seq Expression	PI0017771
Synteny	PI0017771

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAAATAGGTTTGTGAATTTGACATAAACTTTCATTATAATATGGGAGGCGGCAGGTTCAACCTCTTACCCTCAATCAAAGAGGTGAGTTTAGTTCCAGGGAATGATAAGAGCTTTAATCTCCCAGACCAATTGTTACTAACGAAAATTAAATTGATTGATTCAGAATTTTATTTGATACCAACCCATTTTTAGAACGGTGTAATAGCAGTAAACTCCACGCTAGACTTTACTACTCGGCCGCCGTACGCCTAACTTTCCACTTTAAATAACTACGCTCGCCGGAGTTGACAACACTGAACATTCACCGGGAGTCCATCGACTCAAATTCCGCCACTCTTCTTCTTCTCCGACTCGTAGGCTTTTTAACTTTCTCTCTTTTGCTCATTTCAGTTTCGTTCTCATACTTTACATTACCATCGAATACATACATACCTTTATTCCTACCACTGCTCAAAATCAAAGTATTATGCGAAACCTAGGGTTTTGTTTTCTTACTACAACTCTTCTATTGTCATTTCTTATTGTATTATTTTTTTTATGAGAATTCTCTACCTGTTTCATCGCGCTAATTTTAATCGATTCGTCTTTTCCATTCAAGGATCTGAGTGTGCGGTTGTAGCTAGCGATGGATGATGATTCTACGAATCCATTCCGACGTATGTCGAGCCGTACTCGGAAGGTTGCTCCTAAGATGGTTGCTGCCCTAGCCAGCAGCGACAACCGTACTCAGGTTTGTTTGGTGAACTAGATTTTGCTTCTTTGTTGTGAGTTATTGGTGCAGTTTAAGGCTGTACTCTATATTTACAATGTACGTTTTAATCTTGGTTTTTCTGCTCTTCAGGCAGCACTTGCTCGTCTCGAGGCATTGGAAAATGACAATGCGGGAATGGAAGTAGTCGAAAACATTGACGATGAGGATGCTTCTCTCGATGATGATGATCAAGGTTATTCATTCATCTTCTTTCCACTTTGGCCTTTTTCTTGTAGGGTGTTCTCTTCAATTACATCTATCAAATGTTAGACATCTAATATTTTTCCCATTTTTTTCTGTTGTACTGCTTATTCCCATCATCTAATCCAATGTGAAAGTAAGCCGGAATTGCTTTTAGTTCTTCGATTCTTGTTATTTATTAATCCTATATACTTTGGTGTATGCTCGAGAAAACTTTCGTCTTCTCCATCTTTAGAAATTCTGTAAAAAGAACTTTGGAAGATGGCCTGCAACAAAACTCAGATATTCCATTGGCCATGGAGTTTCAGTACTGAGGGTGAGATATTCCAGGTTCATTCGTATGGATTTTTCTAGGGATTTTACAATTCCTGAGTGTTGGGGTGATAATGGAGAAGGATGGAATCTGCATTTAGCAATGCAGCTTTCAGAACTAGAATTTGGTGATTGGTTTGAGCTTACTTTCTACAAATTCTTGCCCACCTACCTGGCAAGAAGATAGGTGGAGAAGTAATTTAAAAGATTCTGGTGATACGATTCTCTTAATTATTGGACAAGTTTCAGCTGATATTCGCTTTTGTTGTTAGTCTGAACTGGTTGCTTTTGTGTACGATTGTTGCTGAAAAGACCAAGATCATGTTTTTCCAAGGGGTGGACAGCTTATAATGGTGGCACGGGAGTGTGGTTTGAGTTTGTCTTTCTCAAAATTCCTACGACAATATCACCAAGCCCACTGTTGTGTAGTCATCCTATTTGGTGAAGAGCCAAGTTGGTGTGGGCTAATTGCCGTCAACGCTATCCCATAGGATTTTAAACCGTAGGATTTTCTCAGAGGGAAGTGTCACAATTTTGAGGAGATTTGATATTTCATCATTTTTGGTTATAGTCTTGGCGAACTCTAATCAAATTATTTGAAACTGTTCTCTTTTTCTTGTATTGTTTGTCGAACCCAGTTGCTGCTGTTGTTTGTAGGCTCTACATGCTTCAAATTCGGTTGATATATCATCTCTTTCGTTCCTCCTTTTGTGCTCTTGTGTTTAGTTCCGTATAGAGAAATCACTTTAAAATGAAATACATTTTCAAGGAATAATAGAACCCGCCAACTTCATTTCTGTTTTTTTGTGTCCATAATATACTTGCATTGATTCAAACAGATTGAATTATACTCTTCAATACCTTAGAGTGTTGTTTGGTATTTAGTGTCACTAATCTTGACCCTATTTTGACCCCAATGCAGCATACATAAAGCGCCAATCAAAGGGCACTAAACGGAAAACTAGACAGGCAAAAGCACTTGAAGCTAAGAAAGCTCCCAAAACTTTTATGGAGCTTCTGCACGAGGTTTGTATCAAAGCTCTTCTACTTCGTGGCCTTATTAGATTGCAATAAAAAGTTTGTTTTGATGTTGAGCTACACTAAAAACAGGCAAATTTGGAGTCATTGCCTCCACATGTTCCATCATACTTGAAGGCGGCCGTTGGACCTCCAAGCTCTACCTCACGCCGACATTTCTGCACGGTTTGTGGTTTTGCTGCAAGCTACACGTGCATAAGGTGTGGAATCCGCTTTTGTTCATCTCGTTGCCAGAATATACATAACGATACTCGTTGTTTGAAATTTGTTGCCTGATAGGCTGATAGCGATAGGAGGGTGGATAAAGCCATGCGAATTTTGTAGATTATATTGAACTCACTACTCAAATCTCTGTAAATTACAATGTAATCTTAATACTAATTTTGTTTCATGTTT

mRNA sequence

TTTAAATAGGTTTGTGAATTTGACATAAACTTTCATTATAATATGGGAGGCGGCAGGTTCAACCTCTTACCCTCAATCAAAGAGGTGAGTTTAGTTCCAGGGAATGATAAGAGCTTTAATCTCCCAGACCAATTGTTACTAACGAAAATTAAATTGATTGATTCAGAATTTTATTTGATACCAACCCATTTTTAGAACGGTGTAATAGCAGTAAACTCCACGCTAGACTTTACTACTCGGCCGCCGTACGCCTAACTTTCCACTTTAAATAACTACGCTCGCCGGAGTTGACAACACTGAACATTCACCGGGAGTCCATCGACTCAAATTCCGCCACTCTTCTTCTTCTCCGACTCGATCTGAGTGTGCGGTTGTAGCTAGCGATGGATGATGATTCTACGAATCCATTCCGACGTATGTCGAGCCGTACTCGGAAGGTTGCTCCTAAGATGGTTGCTGCCCTAGCCAGCAGCGACAACCGTACTCAGGCAGCACTTGCTCGTCTCGAGGCATTGGAAAATGACAATGCGGGAATGGAAGTAGTCGAAAACATTGACGATGAGGATGCTTCTCTCGATGATGATGATCAAGCATACATAAAGCGCCAATCAAAGGGCACTAAACGGAAAACTAGACAGGCAAAAGCACTTGAAGCTAAGAAAGCTCCCAAAACTTTTATGGAGCTTCTGCACGAGGCAAATTTGGAGTCATTGCCTCCACATGTTCCATCATACTTGAAGGCGGCCGTTGGACCTCCAAGCTCTACCTCACGCCGACATTTCTGCACGGTTTGTGGTTTTGCTGCAAGCTACACGTGCATAAGGTGTGGAATCCGCTTTTGTTCATCTCGTTGCCAGAATATACATAACGATACTCGTTGTTTGAAATTTGTTGCCTGATAGGCTGATAGCGATAGGAGGGTGGATAAAGCCATGCGAATTTTGTAGATTATATTGAACTCACTACTCAAATCTCTGTAAATTACAATGTAATCTTAATACTAATTTTGTTTCATGTTT

Coding sequence (CDS)

ATGGATGATGATTCTACGAATCCATTCCGACGTATGTCGAGCCGTACTCGGAAGGTTGCTCCTAAGATGGTTGCTGCCCTAGCCAGCAGCGACAACCGTACTCAGGCAGCACTTGCTCGTCTCGAGGCATTGGAAAATGACAATGCGGGAATGGAAGTAGTCGAAAACATTGACGATGAGGATGCTTCTCTCGATGATGATGATCAAGCATACATAAAGCGCCAATCAAAGGGCACTAAACGGAAAACTAGACAGGCAAAAGCACTTGAAGCTAAGAAAGCTCCCAAAACTTTTATGGAGCTTCTGCACGAGGCAAATTTGGAGTCATTGCCTCCACATGTTCCATCATACTTGAAGGCGGCCGTTGGACCTCCAAGCTCTACCTCACGCCGACATTTCTGCACGGTTTGTGGTTTTGCTGCAAGCTACACGTGCATAAGGTGTGGAATCCGCTTTTGTTCATCTCGTTGCCAGAATATACATAACGATACTCGTTGTTTGAAATTTGTTGCCTGA

Protein sequence

MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDEDASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA

Homology

[Close]

BLAST of PI0017771 vs. ExPASy Swiss-Prot
Match: Q9FHW2 (SWR1 complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=SWC6 PE=1 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 2.5e-60
Identity = 124/173 (71.68%), Postives = 148/173 (85.55%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDE 60
           M+++ +N  RR+S+RTRKVA KM AAL S+DNRTQAA+ARLEALENDN  +EV++  DDE
Sbjct: 1   MEEEMSN--RRVSNRTRKVATKMAAALTSNDNRTQAAIARLEALENDNGAIEVIDLNDDE 60

Query: 61  DASLD-DDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYL 120
           +ASLD DDD  Y+ K+Q KG+KRKTRQAKALEA+KAPK+F+ELL EANLESLP HVP+YL
Sbjct: 61  EASLDEDDDLGYLQKKQHKGSKRKTRQAKALEARKAPKSFLELLQEANLESLPSHVPTYL 120

Query: 121 KAAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           KAAVGPPSS+SRR+FC+VCG+ A Y C  CG+RFCS RCQNIH DTRC KFVA
Sbjct: 121 KAAVGPPSSSSRRYFCSVCGYIAGYNCCLCGMRFCSIRCQNIHKDTRCQKFVA 171

[Close]

BLAST of PI0017771 vs. ExPASy Swiss-Prot
Match: Q54NW0 (Zinc finger HIT domain-containing protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=znhit1 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.9e-16
Identity = 54/159 (33.96%), Postives = 83/159 (52.20%), Query Frame = 0


Query: 13  SSRTRKVAPKMVAALASSDNRT---QAALARLEALENDNAGMEVVENIDDEDASLDDDDQ 72
           SS+ +    K     +  D R    +   ARLE+L++DN    +    D+ED   +DD+ 
Sbjct: 14  SSKRKSQISKRYRVTSEEDRRNLKEKVISARLESLDDDNEQQPIGSRGDEEDNDYNDDEN 73

Query: 73  AYIKRQSKGTKRK--TRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKAAVGPPSS 132
             +       KR    R+ K  E K     F ++L ++ LE+ P HVP+Y+ +    PS 
Sbjct: 74  EIVYTTPVNKKRLFIAREKKKNEKKSMNLNFNDVLEKSYLETFPDHVPTYI-SVQSKPSI 133

Query: 133 TSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRC 167
              RHFC++CG+  +YTC +C  R+CS +C N HN+TRC
Sbjct: 134 FPPRHFCSICGYIGAYTCKQCSSRYCSIKCFNYHNETRC 171

[Close]

BLAST of PI0017771 vs. ExPASy Swiss-Prot
Match: Q8R331 (Zinc finger HIT domain-containing protein 1 OS=Mus musculus OX=10090 GN=Znhit1 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-13
Identity = 55/137 (40.15%), Postives = 74/137 (54.01%), Query Frame = 0


Query: 40  RLEALENDN------AGM-EVVENIDDEDASLDDDDQAYIKRQSKGTKRKTRQAKALEAK 99
           +LEALENDN      AG+ ++ + +   D   DD D    K++++G   K R        
Sbjct: 31  QLEALENDNFQDDPHAGLPQLGKRLPQFD---DDADTGKKKKKTRGDHFKLR-------- 90

Query: 100 KAPKTFMELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRF 159
              K F  LL E NL +     P+YL A  GPP S  +R FC VCGF + YTC+ CG R+
Sbjct: 91  -FRKNFQALLEEQNLSA--SEGPNYLTACAGPP-SRPQRPFCAVCGFPSPYTCVSCGARY 150

Query: 160 CSSRCQNIHNDTRCLKF 170
           C+ RC   H +TRCLK+
Sbjct: 151 CTVRCLGTHQETRCLKW 152

[Close]

BLAST of PI0017771 vs. ExPASy Swiss-Prot
Match: Q24JY4 (Zinc finger HIT domain-containing protein 1 OS=Bos taurus OX=9913 GN=ZNHIT1 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.5e-12
Identity = 60/167 (35.93%), Postives = 84/167 (50.30%), Query Frame = 0


Query: 10  RRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDN------AGM-EVVENIDDEDA 69
           ++ S R++    + V   A+   R      +LEALENDN      AG+ ++ + +   D 
Sbjct: 4   KKTSVRSQDPGQRRVLDRAARQRRIN---RQLEALENDNFQDDPHAGLPQLGKRLPQFD- 63

Query: 70  SLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKAAV 129
             DD D    K++++G   K R           K F  LL E NL       P+YL A  
Sbjct: 64  --DDADTGKKKKKTRGDHFKLR---------FRKNFQALLEEQNLS--VAEGPNYLTACA 123

Query: 130 GPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKF 170
           GPP S  +R FC VCGF + YTC+ CG R+C+ RC   H +TRCLK+
Sbjct: 124 GPP-SRPQRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQETRCLKW 152

[Close]

BLAST of PI0017771 vs. ExPASy Swiss-Prot
Match: O43257 (Zinc finger HIT domain-containing protein 1 OS=Homo sapiens OX=9606 GN=ZNHIT1 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.5e-12
Identity = 60/167 (35.93%), Postives = 84/167 (50.30%), Query Frame = 0


Query: 10  RRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDN------AGM-EVVENIDDEDA 69
           ++ S R++    + V   A+   R      +LEALENDN      AG+ ++ + +   D 
Sbjct: 4   KKTSVRSQDPGQRRVLDRAARQRRIN---RQLEALENDNFQDDPHAGLPQLGKRLPQFD- 63

Query: 70  SLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKAAV 129
             DD D    K++++G   K R           K F  LL E NL       P+YL A  
Sbjct: 64  --DDADTGKKKKKTRGDHFKLR---------FRKNFQALLEEQNLS--VAEGPNYLTACA 123

Query: 130 GPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKF 170
           GPP S  +R FC VCGF + YTC+ CG R+C+ RC   H +TRCLK+
Sbjct: 124 GPP-SRPQRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQETRCLKW 152

[Close]

BLAST of PI0017771 vs. ExPASy TrEMBL
Match: A0A1S3CKL9 (SWR1 complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103501880 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 5.5e-87
Identity = 170/171 (99.42%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDE 60
           MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDE
Sbjct: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDE 60

Query: 61  DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKA 120
           DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSY KA
Sbjct: 61  DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYFKA 120

Query: 121 AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA
Sbjct: 121 AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 171

[Close]

BLAST of PI0017771 vs. ExPASy TrEMBL
Match: A0A0A0KH15 (HIT-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G181510 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 5.5e-87
Identity = 170/171 (99.42%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDE 60
           MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAG+EVVENIDDE
Sbjct: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60

Query: 61  DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKA 120
           DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKA
Sbjct: 61  DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKA 120

Query: 121 AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA
Sbjct: 121 AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 171

[Close]

BLAST of PI0017771 vs. ExPASy TrEMBL
Match: A0A6J1FTL5 (SWR1 complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111448349 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 9.1e-82
Identity = 161/172 (93.60%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDE 60
           MDDD+TN FRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+E++ENIDDE
Sbjct: 1   MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDE 60

Query: 61  DASLDDDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120
           DASLDDD+QAYI KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEA+LESLPPHVPSYLK
Sbjct: 61  DASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEASLESLPPHVPSYLK 120

Query: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           AAVGPPSSTSRRHFCTVCGFAASYTCIRCG+RFCS RCQNIHNDTRCLKFVA
Sbjct: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA 172

[Close]

BLAST of PI0017771 vs. ExPASy TrEMBL
Match: A0A6J1JHH9 (SWR1 complex subunit 6 OS=Cucurbita maxima OX=3661 GN=LOC111484534 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.5e-81
Identity = 160/172 (93.02%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDE 60
           MDDD+TN FRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+E++ENIDDE
Sbjct: 1   MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDE 60

Query: 61  DASLDDDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120
           DASLDDD+QAYI KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEA+LESLPPHVPSY+K
Sbjct: 61  DASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEASLESLPPHVPSYIK 120

Query: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           AAVGPPSSTSRRHFCTVCGFAASYTCIRCG+RFCS RCQNIHNDTRCLKFVA
Sbjct: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA 172

[Close]

BLAST of PI0017771 vs. ExPASy TrEMBL
Match: A0A6J1D2Z0 (SWR1 complex subunit 6 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017095 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 3.4e-81
Identity = 162/172 (94.19%), Postives = 168/172 (97.67%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDE 60
           MDDD+TN FRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGME+VENIDDE
Sbjct: 1   MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDE 60

Query: 61  DASLDDDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120
           DASLDDDD AYI KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPP+VPSYLK
Sbjct: 61  DASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPYVPSYLK 120

Query: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           AAVGPPSS+SRRHFCTVCGFAA+YTCIRCG+RFCS RCQNIHNDTRCLKFVA
Sbjct: 121 AAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA 172

[Close]

BLAST of PI0017771 vs. NCBI nr
Match: XP_004143171.1 (SWR1 complex subunit 6 [Cucumis sativus] >XP_011657114.1 SWR1 complex subunit 6 [Cucumis sativus] >XP_031743058.1 SWR1 complex subunit 6 [Cucumis sativus] >KGN47046.1 hypothetical protein Csa_020987 [Cucumis sativus])

HSP 1 Score: 330.1 bits (845), Expect = 1.1e-86
Identity = 170/171 (99.42%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDE 60
           MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAG+EVVENIDDE
Sbjct: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60

Query: 61  DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKA 120
           DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKA
Sbjct: 61  DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKA 120

Query: 121 AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA
Sbjct: 121 AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 171

[Close]

BLAST of PI0017771 vs. NCBI nr
Match: XP_008463835.1 (PREDICTED: SWR1 complex subunit 6 [Cucumis melo] >XP_008463836.1 PREDICTED: SWR1 complex subunit 6 [Cucumis melo] >XP_008463837.1 PREDICTED: SWR1 complex subunit 6 [Cucumis melo])

HSP 1 Score: 330.1 bits (845), Expect = 1.1e-86
Identity = 170/171 (99.42%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDE 60
           MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDE
Sbjct: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDE 60

Query: 61  DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKA 120
           DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSY KA
Sbjct: 61  DASLDDDDQAYIKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYFKA 120

Query: 121 AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA
Sbjct: 121 AVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 171

[Close]

BLAST of PI0017771 vs. NCBI nr
Match: XP_038901863.1 (SWR1 complex subunit 6 [Benincasa hispida] >XP_038901864.1 SWR1 complex subunit 6 [Benincasa hispida])

HSP 1 Score: 317.4 bits (812), Expect = 7.6e-83
Identity = 165/172 (95.93%), Postives = 168/172 (97.67%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDE 60
           MDDD+TNPFRRMSSR RKVAPKMVAALASSDNRTQAALARLEALENDNAG+E VENIDDE
Sbjct: 1   MDDDATNPFRRMSSRNRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEAVENIDDE 60

Query: 61  DASLDDDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120
           DASLDDD+QAYI KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK
Sbjct: 61  DASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120

Query: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCS RCQNIHNDTRCLKFVA
Sbjct: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSCRCQNIHNDTRCLKFVA 172

[Close]

BLAST of PI0017771 vs. NCBI nr
Match: XP_023512985.1 (SWR1 complex subunit 6 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 312.8 bits (800), Expect = 1.9e-81
Identity = 161/172 (93.60%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDE 60
           MDDD+TN FRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+E++ENIDDE
Sbjct: 21  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDE 80

Query: 61  DASLDDDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120
           DASLDDD+QAYI KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEA+LESLPPHVPSYLK
Sbjct: 81  DASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEASLESLPPHVPSYLK 140

Query: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           AAVGPPSSTSRRHFCTVCGFAASYTCIRCG+RFCS RCQNIHNDTRCLKFVA
Sbjct: 141 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA 192

[Close]

BLAST of PI0017771 vs. NCBI nr
Match: XP_022943643.1 (SWR1 complex subunit 6 [Cucurbita moschata] >XP_022943644.1 SWR1 complex subunit 6 [Cucurbita moschata] >XP_022943645.1 SWR1 complex subunit 6 [Cucurbita moschata] >XP_022943647.1 SWR1 complex subunit 6 [Cucurbita moschata] >XP_022943648.1 SWR1 complex subunit 6 [Cucurbita moschata] >XP_023512986.1 SWR1 complex subunit 6 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023512987.1 SWR1 complex subunit 6 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 312.8 bits (800), Expect = 1.9e-81
Identity = 161/172 (93.60%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDE 60
           MDDD+TN FRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+E++ENIDDE
Sbjct: 1   MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDE 60

Query: 61  DASLDDDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120
           DASLDDD+QAYI KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEA+LESLPPHVPSYLK
Sbjct: 61  DASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEASLESLPPHVPSYLK 120

Query: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           AAVGPPSSTSRRHFCTVCGFAASYTCIRCG+RFCS RCQNIHNDTRCLKFVA
Sbjct: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA 172

[Close]

BLAST of PI0017771 vs. TAIR 10
Match: AT5G37055.1 (HIT-type Zinc finger family protein )

HSP 1 Score: 233.0 bits (593), Expect = 1.8e-61
Identity = 124/173 (71.68%), Postives = 148/173 (85.55%), Query Frame = 0


Query: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDE 60
           M+++ +N  RR+S+RTRKVA KM AAL S+DNRTQAA+ARLEALENDN  +EV++  DDE
Sbjct: 1   MEEEMSN--RRVSNRTRKVATKMAAALTSNDNRTQAAIARLEALENDNGAIEVIDLNDDE 60

Query: 61  DASLD-DDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYL 120
           +ASLD DDD  Y+ K+Q KG+KRKTRQAKALEA+KAPK+F+ELL EANLESLP HVP+YL
Sbjct: 61  EASLDEDDDLGYLQKKQHKGSKRKTRQAKALEARKAPKSFLELLQEANLESLPSHVPTYL 120

Query: 121 KAAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 172
           KAAVGPPSS+SRR+FC+VCG+ A Y C  CG+RFCS RCQNIH DTRC KFVA
Sbjct: 121 KAAVGPPSSSSRRYFCSVCGYIAGYNCCLCGMRFCSIRCQNIHKDTRCQKFVA 171

The following BLAST results are available for this feature:

BLAST of PI0017771 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHW2	2.5e-60	71.68	SWR1 complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=SWC6 PE=1 SV=1	[more]
Q54NW0	2.9e-16	33.96	Zinc finger HIT domain-containing protein 1 homolog OS=Dictyostelium discoideum ...	[more]
Q8R331	1.7e-13	40.15	Zinc finger HIT domain-containing protein 1 OS=Mus musculus OX=10090 GN=Znhit1 P...	[more]
Q24JY4	2.5e-12	35.93	Zinc finger HIT domain-containing protein 1 OS=Bos taurus OX=9913 GN=ZNHIT1 PE=2...	[more]
O43257	2.5e-12	35.93	Zinc finger HIT domain-containing protein 1 OS=Homo sapiens OX=9606 GN=ZNHIT1 PE...	[more]

BLAST of PI0017771 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CKL9	5.5e-87	99.42	SWR1 complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103501880 PE=4 SV=1	[more]
A0A0A0KH15	5.5e-87	99.42	HIT-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G181510 PE...	[more]
A0A6J1FTL5	9.1e-82	93.60	SWR1 complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111448349 PE=4 SV=1	[more]
A0A6J1JHH9	1.5e-81	93.02	SWR1 complex subunit 6 OS=Cucurbita maxima OX=3661 GN=LOC111484534 PE=4 SV=1	[more]
A0A6J1D2Z0	3.4e-81	94.19	SWR1 complex subunit 6 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017095...	[more]

BLAST of PI0017771 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143171.1	1.1e-86	99.42	SWR1 complex subunit 6 [Cucumis sativus] >XP_011657114.1 SWR1 complex subunit 6 ...	[more]
XP_008463835.1	1.1e-86	99.42	PREDICTED: SWR1 complex subunit 6 [Cucumis melo] >XP_008463836.1 PREDICTED: SWR1...	[more]
XP_038901863.1	7.6e-83	95.93	SWR1 complex subunit 6 [Benincasa hispida] >XP_038901864.1 SWR1 complex subunit ...	[more]
XP_023512985.1	1.9e-81	93.60	SWR1 complex subunit 6 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022943643.1	1.9e-81	93.60	SWR1 complex subunit 6 [Cucurbita moschata] >XP_022943644.1 SWR1 complex subunit...	[more]

BLAST of PI0017771 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G37055.1	1.8e-61	71.68	HIT-type Zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 27..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR13093:SF1	BNACNNG31940D PROTEIN	coord: 1..171
None	No IPR available	SUPERFAMILY	144232	HIT/MYND zinc finger-like	coord: 129..163
IPR007529	Zinc finger, HIT-type	PFAM	PF04438	zf-HIT	coord: 130..158 e-value: 1.3E-10 score: 40.9
IPR007529	Zinc finger, HIT-type	PROSITE	PS51083	ZF_HIT	coord: 134..166 score: 9.360636
IPR039723	Vps71/ZNHIT1	PANTHER	PTHR13093	ZINC FINGER HIT DOMAIN CONTAINING PROTEIN 1	coord: 1..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0017771.2	PI0017771.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0043486	histone exchange
biological_process	GO:0048638	regulation of developmental growth
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0006338	chromatin remodeling
cellular_component	GO:0000812	Swr1 complex
molecular_function	GO:0042802	identical protein binding
molecular_function	GO:0031491	nucleosome binding