PI0017710 (gene) Melon (PI 482460) v1

Overview


Name	PI0017710
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon 17.6
Location	chr08: 8489177 .. 8489725 (-)
RNA-Seq Expression	PI0017710
Synteny	PI0017710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATATCGCAAGTCAATGCCGTAGGAAGCTCTGTGCACGCGGCTAACCAAATTGATGACATGGGATGCGTGGGATGCGGCGGTCATCATAACATTGACATATGCCCACTCAATACTGAAACCGTCGCGTTCATAAGGAACGACCCCTTCTCCAATACTTACAACCCTGGTTGGAGGAACCATCCCAACTTTGGATGGGGAGGATCGGGTCAACAACAAGGACGACATGGTGGTCAAGGTGACCATCGCGGGGAAGCATCTGGCTCCCACACGAGGTACCAAAACAATAGACCCCAACACTCCCATCATCAACAGCAGCCCACCACCACCGCCTCATCCACCTCTCCCATGGAAAGTCTTCTCCGCGAATACATGCAGAAAAATGATGCTCTTCTGCAAAGCCAAGCTTCATCAATTCGTAATCTGGAGGTACAGTTAGGTCAGCTCGCTAGTGATTTCTCCGAAAGACAGCAAGGATCCCTCCCAAGCAATACAGAAACGCCAAATCAGGCGGGGGATCTGGTAAAGAGAAGTGTCACGCGGTGA

mRNA sequence

ATGGCAATATCGCAAGTCAATGCCGTAGGAAGCTCTGTGCACGCGGCTAACCAAATTGATGACATGGGATGCGTGGGATGCGGCGGTGACCATCGCGGGGAAGCATCTGGCTCCCACACGAGGTACCAAAACAATAGACCCCAACACTCCCATCATCAACAGCAGCCCACCACCACCGCCTCATCCACCTCTCCCATGGAAAGTCTTCTCCGCGAATACATGCAGAAAAATGATGCTCTTCTGCAAAGCCAAGCTTCATCAATTCGTAATCTGGAGGTACAGTTAGGTCAGCTCGCTAGTGATTTCTCCGAAAGACAGCAAGGATCCCTCCCAAGCAATACAGAAACGCCAAATCAGGCGGGGGATCTGGTAAAGAGAAGTGTCACGCGGTGA

Coding sequence (CDS)

ATGGCAATATCGCAAGTCAATGCCGTAGGAAGCTCTGTGCACGCGGCTAACCAAATTGATGACATGGGATGCGTGGGATGCGGCGGTGACCATCGCGGGGAAGCATCTGGCTCCCACACGAGGTACCAAAACAATAGACCCCAACACTCCCATCATCAACAGCAGCCCACCACCACCGCCTCATCCACCTCTCCCATGGAAAGTCTTCTCCGCGAATACATGCAGAAAAATGATGCTCTTCTGCAAAGCCAAGCTTCATCAATTCGTAATCTGGAGGTACAGTTAGGTCAGCTCGCTAGTGATTTCTCCGAAAGACAGCAAGGATCCCTCCCAAGCAATACAGAAACGCCAAATCAGGCGGGGGATCTGGTAAAGAGAAGTGTCACGCGGTGA

Protein sequence

MAISQVNAVGSSVHAANQIDDMGCVGCGGDHRGEASGSHTRYQNNRPQHSHHQQQPTTTASSTSPMESLLREYMQKNDALLQSQASSIRNLEVQLGQLASDFSERQQGSLPSNTETPNQAGDLVKRSVTR

Homology

[Close]

BLAST of PI0017710 vs. ExPASy TrEMBL
Match: A0A5D3DWD5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold749G00200 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.4e-21
Identity = 69/117 (58.97%), Postives = 81/117 (69.23%), Query Frame = 0


Query: 23  GCVGCG---------GDHRGEASGSHTRYQNNRPQHSHHQQQ--PTTTASSTSPMESLLR 82
           GCV CG         G + G+ASG   R   +RP HS  QQQ   T T S +S ME+L+R
Sbjct: 3   GCVRCGSPQNIDGGQGSYHGKASGYRQRQHQDRPHHSTPQQQQATTNTPSFSSSMETLIR 62

Query: 83  EYMQKNDALLQSQASSIRNLEVQLGQLASDFSERQQGSLPSNTETPNQAGDLVKRSV 129
            YM++NDALLQSQA+SIRNLE+Q+GQ+A DFSER Q  LPSNTE  NQAGDL KRSV
Sbjct: 63  GYMKRNDALLQSQATSIRNLELQMGQIAIDFSERPQVFLPSNTEMSNQAGDLKKRSV 119

[Close]

BLAST of PI0017710 vs. ExPASy TrEMBL
Match: A0A0A0KMN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G055570 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.8e-18
Identity = 64/127 (50.39%), Postives = 87/127 (68.50%), Query Frame = 0


Query: 1   MAISQVNAVGSSVHAANQIDDMGCVGCGGDHRGEASGSHTRYQNNRPQH-----SHHQQQ 60
           MA+ +VNA GSS+   +Q  ++G V CGG   GE SG   R  +  PQ      +HH   
Sbjct: 1   MALLEVNAAGSSLQIVHQTAELGFVECGGP--GEVSGYCPRKYHEWPQQPIQHLNHHILN 60

Query: 61  PTTTASSTSP-MESLLREYMQKNDALLQSQASSIRNLEVQLGQLASDFSERQQGSLPSNT 120
            + ++SS+ P MESL +EYMQ+NDALLQSQA+SI+NLE+Q+GQ+A+D S + +G+LPSNT
Sbjct: 61  QSHSSSSSLPSMESLFQEYMQRNDALLQSQAASIKNLELQMGQIANDISRQPKGTLPSNT 120

Query: 121 ETPNQAG 122
           E P Q G
Sbjct: 121 EIPIQGG 125

[Close]

BLAST of PI0017710 vs. ExPASy TrEMBL
Match: A0A5D3D2S0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00800 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.4e-18
Identity = 69/149 (46.31%), Postives = 85/149 (57.05%), Query Frame = 0


Query: 1   MAISQVNAVGSSVHAANQIDDMGCVGCG-----------------------------GDH 60
           MA+SQV+AVG+ V A  Q+D+M  VGCG                             G++
Sbjct: 64  MALSQVDAVGNYVQAVKQVDEMRPVGCGEPHTTDACLLNAEIAAYVKSYPYSNTYNAGNY 123

Query: 61  RGEASGSHTRYQNNRPQHS--HHQQQPTTTASSTSPMESLLREYMQKNDALLQSQASSIR 119
           RGEA   H +   +RP +S   HQQ  T T SS S M +LLR+YMQ+ DA +QSQ +SI 
Sbjct: 124 RGEAP-DHRQRHYDRPHYSAPQHQQATTNTPSSFSSMVALLRKYMQRKDAFMQSQTTSII 183

[Close]

BLAST of PI0017710 vs. ExPASy TrEMBL
Match: A0A5A7U1G5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00940 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 8.9e-13
Identity = 43/63 (68.25%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 66  MESLLREYMQKNDALLQSQASSIRNLEVQLGQLASDFSERQQGSLPSNTETPNQAGDLVK 125
           ME+LLREYMQ+NDALLQ+QA+SI+NL++QL QLASD S R +GSLP++T+TPN+ GD  K
Sbjct: 1   METLLREYMQRNDALLQTQATSIKNLKLQLAQLASDISGRPRGSLPNSTKTPNKVGDPRK 60

Query: 126 RSV 129
            SV
Sbjct: 61  ISV 63

[Close]

BLAST of PI0017710 vs. ExPASy TrEMBL
Match: A0A0A0KN83 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G403040 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 9.8e-12
Identity = 42/59 (71.19%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 63  TSPMESLLREYMQKNDALLQSQASSIRNLEVQLGQLASDFSERQQGSLPSNTETPNQAG 122
           T  ME+L REYMQ+NDALLQSQASSI+NLE+QLGQLA+D SER +G+L  NT+TP Q G
Sbjct: 45  TKDMEALFREYMQRNDALLQSQASSIKNLELQLGQLANDVSERPKGALLCNTKTPIQRG 103

[Close]

BLAST of PI0017710 vs. NCBI nr
Match: TYK27798.1 (hypothetical protein E5676_scaffold749G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 2.8e-21
Identity = 69/117 (58.97%), Postives = 81/117 (69.23%), Query Frame = 0


Query: 23  GCVGCG---------GDHRGEASGSHTRYQNNRPQHSHHQQQ--PTTTASSTSPMESLLR 82
           GCV CG         G + G+ASG   R   +RP HS  QQQ   T T S +S ME+L+R
Sbjct: 3   GCVRCGSPQNIDGGQGSYHGKASGYRQRQHQDRPHHSTPQQQQATTNTPSFSSSMETLIR 62

Query: 83  EYMQKNDALLQSQASSIRNLEVQLGQLASDFSERQQGSLPSNTETPNQAGDLVKRSV 129
            YM++NDALLQSQA+SIRNLE+Q+GQ+A DFSER Q  LPSNTE  NQAGDL KRSV
Sbjct: 63  GYMKRNDALLQSQATSIRNLELQMGQIAIDFSERPQVFLPSNTEMSNQAGDLKKRSV 119

[Close]

BLAST of PI0017710 vs. NCBI nr
Match: KAA0040852.1 (hypothetical protein E6C27_scaffold333G00770 [Cucumis melo var. makuwa] >TYK17828.1 hypothetical protein E5676_scaffold306G00800 [Cucumis melo var. makuwa])

HSP 1 Score: 101.7 bits (252), Expect = 5.0e-18
Identity = 69/149 (46.31%), Postives = 85/149 (57.05%), Query Frame = 0


Query: 1   MAISQVNAVGSSVHAANQIDDMGCVGCG-----------------------------GDH 60
           MA+SQV+AVG+ V A  Q+D+M  VGCG                             G++
Sbjct: 64  MALSQVDAVGNYVQAVKQVDEMRPVGCGEPHTTDACLLNAEIAAYVKSYPYSNTYNAGNY 123

Query: 61  RGEASGSHTRYQNNRPQHS--HHQQQPTTTASSTSPMESLLREYMQKNDALLQSQASSIR 119
           RGEA   H +   +RP +S   HQQ  T T SS S M +LLR+YMQ+ DA +QSQ +SI 
Sbjct: 124 RGEAP-DHRQRHYDRPHYSAPQHQQATTNTPSSFSSMVALLRKYMQRKDAFMQSQTTSII 183

[Close]

BLAST of PI0017710 vs. NCBI nr
Match: XP_030509259.1 (uncharacterized protein LOC115723937 [Cannabis sativa])

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-12
Identity = 48/87 (55.17%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 43  QNNRPQHSHHQQQPTTTASSTSPMESLLREYMQKNDALLQSQASSIRNLEVQLGQLASDF 102
           Q  RPQ  H  Q      S TS +ESL+R+YM KNDA++QSQA+S+RNLEVQLGQLA+D 
Sbjct: 372 QQPRPQQPHQPQ-----GSQTSSLESLMRDYMAKNDAVIQSQAASLRNLEVQLGQLANDL 431

Query: 103 SERQQGSLPSNTETPNQAGDLVKRSVT 130
             R QG+LPS+TE P + G    ++VT
Sbjct: 432 KNRPQGTLPSDTENPRRDGKEHCKAVT 453

[Close]

BLAST of PI0017710 vs. NCBI nr
Match: XP_030495102.1 (uncharacterized protein LOC115710889 [Cannabis sativa])

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-12
Identity = 47/87 (54.02%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 43  QNNRPQHSHHQQQPTTTASSTSPMESLLREYMQKNDALLQSQASSIRNLEVQLGQLASDF 102
           Q  RPQ  H  Q      S TS +ESL+R+YM KNDA++QSQA+S+RNLEVQLGQLA+D 
Sbjct: 26  QQPRPQQPHQPQ-----GSQTSSLESLMRDYMTKNDAVIQSQAASLRNLEVQLGQLANDL 85

Query: 103 SERQQGSLPSNTETPNQAGDLVKRSVT 130
             R QG+LPS+TE P + G    +++T
Sbjct: 86  KNRPQGTLPSDTENPRRDGKEHCKAIT 107

[Close]

BLAST of PI0017710 vs. NCBI nr
Match: KAA0049612.1 (hypothetical protein E6C27_scaffold163G00690 [Cucumis melo var. makuwa] >TYK15970.1 hypothetical protein E5676_scaffold94G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 1.8e-12
Identity = 43/63 (68.25%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 66  MESLLREYMQKNDALLQSQASSIRNLEVQLGQLASDFSERQQGSLPSNTETPNQAGDLVK 125
           ME+LLREYMQ+NDALLQ+QA+SI+NL++QL QLASD S R +GSLP++T+TPN+ GD  K
Sbjct: 1   METLLREYMQRNDALLQTQATSIKNLKLQLAQLASDISGRPRGSLPNSTKTPNKVGDPRK 60

Query: 126 RSV 129
            SV
Sbjct: 61  ISV 63

The following BLAST results are available for this feature:

BLAST of PI0017710 vs.


Match Name	E-value	Identity	Description

BLAST of PI0017710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DWD5	1.4e-21	58.97	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KMN3	1.8e-18	50.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G055570 PE=4 SV=1	[more]
A0A5D3D2S0	2.4e-18	46.31	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U1G5	8.9e-13	68.25	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KN83	9.8e-12	71.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G403040 PE=4 SV=1	[more]

BLAST of PI0017710 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK27798.1	2.8e-21	58.97	hypothetical protein E5676_scaffold749G00200 [Cucumis melo var. makuwa]	[more]
KAA0040852.1	5.0e-18	46.31	hypothetical protein E6C27_scaffold333G00770 [Cucumis melo var. makuwa] >TYK1782...	[more]
XP_030509259.1	1.1e-12	55.17	uncharacterized protein LOC115723937 [Cannabis sativa]	[more]
XP_030495102.1	1.4e-12	54.02	uncharacterized protein LOC115710889 [Cannabis sativa]	[more]
KAA0049612.1	1.8e-12	68.25	hypothetical protein E6C27_scaffold163G00690 [Cucumis melo var. makuwa] >TYK1597...	[more]

BLAST of PI0017710 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0017710.1	PI0017710.1	mRNA