PI0017634 (gene) Melon (PI 482460) v1

Overview


Name	PI0017634
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Ribonuclease H
Location	chr07: 19092176 .. 19092664 (-)
RNA-Seq Expression	PI0017634
Synteny	PI0017634

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCACTTTTTGAAAGTCTTTTTGAAGCAAGATATGTTAATAAGGAATATTTAAACCCCAATATAAGATATGAAGGGTATGATAAAAGCAAATATTTTGTATTTCATCAAGGCGTTGCAGGTCATGTTATTCAACAGTGCTACAAGTTTAGATTCAAAGTACAACAACTTATGGATGCAAAGATACTCAAGGTACATAAAGGACAAGGAAAAGAGGAGGTGAAGGACAGTAAAATATGTGCATCAACGGATGAGGTTGTAGGAAAGGAAGATTCCTTTTTACCAAAGCCTTTAACGATTTTCTACCAAGAAAATCGTAATGAGTCAACTTCCTACAATCCTAAAATACTCACGATCCGAGTACCTAGTCCTTTCCAATTTAAGCATTTAAAAGCAGTGCCTTGGAGGTATGATTGTCAAGTCATATCAGGTCATTCAATTGATAATATTAGAGGAATCAGTGGGATAACTCGAAGTGGAAGATGA

mRNA sequence

ATGGAAGCACTTTTTGAAAGTCTTTTTGAAGCAAGATATGTTAATAAGGAATATTTAAACCCCAATATAAGATATGAAGGGTATGATAAAAGCAAATATTTTGTATTTCATCAAGGCGTTGCAGGTCATGTTATTCAACAGTGCTACAAGTTTAGATTCAAAGTACAACAACTTATGGATGCAAAGATACTCAAGGTACATAAAGGACAAGGAAAAGAGGAGGTGAAGGACAGTAAAATATGTGCATCAACGGATGAGGTTGTAGGAAAGGAAGATTCCTTTTTACCAAAGCCTTTAACGATTTTCTACCAAGAAAATCGTAATGAGTCAACTTCCTACAATCCTAAAATACTCACGATCCGAGTACCTAGTCCTTTCCAATTTAAGCATTTAAAAGCAGTGCCTTGGAGGTATGATTGTCAAGTCATATCAGGTCATTCAATTGATAATATTAGAGGAATCAGTGGGATAACTCGAAGTGGAAGATGA

Coding sequence (CDS)

ATGGAAGCACTTTTTGAAAGTCTTTTTGAAGCAAGATATGTTAATAAGGAATATTTAAACCCCAATATAAGATATGAAGGGTATGATAAAAGCAAATATTTTGTATTTCATCAAGGCGTTGCAGGTCATGTTATTCAACAGTGCTACAAGTTTAGATTCAAAGTACAACAACTTATGGATGCAAAGATACTCAAGGTACATAAAGGACAAGGAAAAGAGGAGGTGAAGGACAGTAAAATATGTGCATCAACGGATGAGGTTGTAGGAAAGGAAGATTCCTTTTTACCAAAGCCTTTAACGATTTTCTACCAAGAAAATCGTAATGAGTCAACTTCCTACAATCCTAAAATACTCACGATCCGAGTACCTAGTCCTTTCCAATTTAAGCATTTAAAAGCAGTGCCTTGGAGGTATGATTGTCAAGTCATATCAGGTCATTCAATTGATAATATTAGAGGAATCAGTGGGATAACTCGAAGTGGAAGATGA

Protein sequence

MEALFESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMDAKILKVHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLTIFYQENRNESTSYNPKILTIRVPSPFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR

Homology

[Close]

BLAST of PI0017634 vs. ExPASy TrEMBL
Match: A0A5A7TRL7 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00010 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 8.1e-64
Identity = 122/163 (74.85%), Postives = 144/163 (88.34%), Query Frame = 0


Query: 1   MEALFESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMD 60
           MEALFE LFEARYV+ EYL+PNIRYEGYD+S++ +FHQGVAGHV+QQC KFR KVQQLMD
Sbjct: 113 MEALFEGLFEARYVSHEYLDPNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLMD 172

Query: 61  AKILKVHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLTIFYQENRNESTSY-NPKILT 120
           +KIL V++GQ K+E+KDSK+CA  DEV  K+DSFLP+PLT+FYQE+ N STS+ NPK L 
Sbjct: 173 SKILTVYRGQEKDEMKDSKMCALMDEVSEKKDSFLPRPLTVFYQESHNGSTSFCNPKKLP 232

Query: 121 IRVPSPFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR 163
           I+VPSPF+FK LKAVPWRYDCQVI+G S+DNI GISGITRSGR
Sbjct: 233 IQVPSPFKFKDLKAVPWRYDCQVITGPSVDNITGISGITRSGR 275

[Close]

BLAST of PI0017634 vs. ExPASy TrEMBL
Match: A0A5A7VIM6 (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001370 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 1.1e-63
Identity = 123/163 (75.46%), Postives = 144/163 (88.34%), Query Frame = 0


Query: 1   MEALFESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMD 60
           MEALFE LFEA YV+ EYL+PNIRYEGYD+S++ +FHQGVAGHV+QQC KFR KVQQLMD
Sbjct: 440 MEALFEGLFEAGYVSHEYLDPNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLMD 499

Query: 61  AKILKVHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLTIFYQENRNESTSY-NPKILT 120
           +KIL V++GQGK+E+KDSKICA  DEV  K+DSFLP+PLT+FYQE+ NESTS+ N K LT
Sbjct: 500 SKILTVYRGQGKDEMKDSKICALMDEVSEKKDSFLPRPLTVFYQESHNESTSFCNLKKLT 559

Query: 121 IRVPSPFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR 163
           I+VPSPF+FK LKAVPW YDCQVI+G S+DNI GISGITRSGR
Sbjct: 560 IQVPSPFKFKDLKAVPWWYDCQVITGPSVDNITGISGITRSGR 602

[Close]

BLAST of PI0017634 vs. ExPASy TrEMBL
Match: A0A5A7T7R4 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002820 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 6.8e-63
Identity = 120/163 (73.62%), Postives = 143/163 (87.73%), Query Frame = 0


Query: 1   MEALFESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMD 60
           MEALFE LFEA YV+ EYL+PNIRYEGY++S++ + HQGVAGHV+QQC KFR KVQQ MD
Sbjct: 259 MEALFEGLFEAGYVSHEYLDPNIRYEGYEESRHCILHQGVAGHVVQQCQKFRSKVQQFMD 318

Query: 61  AKILKVHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLTIFYQENRNESTSY-NPKILT 120
           +KIL V++GQ K+E+KDSK+CA  DEV  K+DSFLP+PLT+FYQE+ NESTS+ NPK LT
Sbjct: 319 SKILTVYRGQEKDEMKDSKMCALMDEVSEKKDSFLPRPLTVFYQESHNESTSFCNPKKLT 378

Query: 121 IRVPSPFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR 163
           I+VPSPF+FK LKAVPWRYDCQVI+G S+DNI GISGITRSGR
Sbjct: 379 IQVPSPFKFKDLKAVPWRYDCQVITGPSVDNITGISGITRSGR 421

[Close]

BLAST of PI0017634 vs. ExPASy TrEMBL
Match: A0A5A7T0H8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00180 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 8.9e-63
Identity = 121/163 (74.23%), Postives = 143/163 (87.73%), Query Frame = 0


Query: 1   MEALFESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMD 60
           MEALFE LFEA YV+ EYL+PNIRYEGYD+S++ +FH+GVAGHV+QQC KFR KVQQLMD
Sbjct: 529 MEALFEGLFEAGYVSHEYLDPNIRYEGYDESRHCIFHRGVAGHVVQQCQKFRSKVQQLMD 588

Query: 61  AKILKVHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLTIFYQENRNESTSY-NPKILT 120
           +KIL V++GQGK+E+K SKIC   DEV  K+DSFLP+PLT+FYQE+RNESTS+ NPK LT
Sbjct: 589 SKILTVYRGQGKDEMKYSKICVLMDEVSEKKDSFLPRPLTVFYQESRNESTSFCNPKKLT 648

Query: 121 IRVPSPFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR 163
           I+VPSPF+FK LKAVPWRYDCQVI+G  +DNI  ISGITRSGR
Sbjct: 649 IQVPSPFKFKDLKAVPWRYDCQVITGPLVDNITEISGITRSGR 691

[Close]

BLAST of PI0017634 vs. ExPASy TrEMBL
Match: A0A5D3DEB3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1721G00440 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 8.9e-63
Identity = 119/158 (75.32%), Postives = 142/158 (89.87%), Query Frame = 0


Query: 6   ESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMDAKILK 65
           E+LFEA YV+ EYL+PNIRYEGYD+S++ +FHQGVAGHV+QQC KFR KVQ+LMD+KIL 
Sbjct: 472 EALFEAGYVSHEYLDPNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQELMDSKILT 531

Query: 66  VHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLTIFYQENRNESTSY-NPKILTIRVPS 125
           V++GQGK+E+KDSKICA  DEV  K+DSFLP+PLT+FYQE+ NESTS+ NPK LTI+VPS
Sbjct: 532 VYRGQGKDEMKDSKICALMDEVSEKKDSFLPRPLTVFYQESHNESTSFCNPKKLTIQVPS 591

Query: 126 PFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR 163
           PF+FK LKAVPWRYDCQVI+G S+DNI GISGITRSGR
Sbjct: 592 PFKFKDLKAVPWRYDCQVITGPSVDNITGISGITRSGR 629

[Close]

BLAST of PI0017634 vs. NCBI nr
Match: KAA0046213.1 (uncharacterized protein E6C27_scaffold284G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 253.1 bits (645), Expect = 1.7e-63
Identity = 122/163 (74.85%), Postives = 144/163 (88.34%), Query Frame = 0


Query: 1   MEALFESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMD 60
           MEALFE LFEARYV+ EYL+PNIRYEGYD+S++ +FHQGVAGHV+QQC KFR KVQQLMD
Sbjct: 113 MEALFEGLFEARYVSHEYLDPNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLMD 172

Query: 61  AKILKVHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLTIFYQENRNESTSY-NPKILT 120
           +KIL V++GQ K+E+KDSK+CA  DEV  K+DSFLP+PLT+FYQE+ N STS+ NPK L 
Sbjct: 173 SKILTVYRGQEKDEMKDSKMCALMDEVSEKKDSFLPRPLTVFYQESHNGSTSFCNPKKLP 232

Query: 121 IRVPSPFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR 163
           I+VPSPF+FK LKAVPWRYDCQVI+G S+DNI GISGITRSGR
Sbjct: 233 IQVPSPFKFKDLKAVPWRYDCQVITGPSVDNITGISGITRSGR 275

[Close]

BLAST of PI0017634 vs. NCBI nr
Match: KAA0067953.1 (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 252.7 bits (644), Expect = 2.2e-63
Identity = 123/163 (75.46%), Postives = 144/163 (88.34%), Query Frame = 0


Query: 1   MEALFESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMD 60
           MEALFE LFEA YV+ EYL+PNIRYEGYD+S++ +FHQGVAGHV+QQC KFR KVQQLMD
Sbjct: 440 MEALFEGLFEAGYVSHEYLDPNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQQLMD 499

Query: 61  AKILKVHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLTIFYQENRNESTSY-NPKILT 120
           +KIL V++GQGK+E+KDSKICA  DEV  K+DSFLP+PLT+FYQE+ NESTS+ N K LT
Sbjct: 500 SKILTVYRGQGKDEMKDSKICALMDEVSEKKDSFLPRPLTVFYQESHNESTSFCNLKKLT 559

Query: 121 IRVPSPFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR 163
           I+VPSPF+FK LKAVPW YDCQVI+G S+DNI GISGITRSGR
Sbjct: 560 IQVPSPFKFKDLKAVPWWYDCQVITGPSVDNITGISGITRSGR 602

[Close]

BLAST of PI0017634 vs. NCBI nr
Match: KAA0037621.1 (uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa])

HSP 1 Score: 250.0 bits (637), Expect = 1.4e-62
Identity = 120/163 (73.62%), Postives = 143/163 (87.73%), Query Frame = 0


Query: 1   MEALFESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMD 60
           MEALFE LFEA YV+ EYL+PNIRYEGY++S++ + HQGVAGHV+QQC KFR KVQQ MD
Sbjct: 259 MEALFEGLFEAGYVSHEYLDPNIRYEGYEESRHCILHQGVAGHVVQQCQKFRSKVQQFMD 318

Query: 61  AKILKVHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLTIFYQENRNESTSY-NPKILT 120
           +KIL V++GQ K+E+KDSK+CA  DEV  K+DSFLP+PLT+FYQE+ NESTS+ NPK LT
Sbjct: 319 SKILTVYRGQEKDEMKDSKMCALMDEVSEKKDSFLPRPLTVFYQESHNESTSFCNPKKLT 378

Query: 121 IRVPSPFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR 163
           I+VPSPF+FK LKAVPWRYDCQVI+G S+DNI GISGITRSGR
Sbjct: 379 IQVPSPFKFKDLKAVPWRYDCQVITGPSVDNITGISGITRSGR 421

[Close]

BLAST of PI0017634 vs. NCBI nr
Match: KAA0036942.1 (uncharacterized protein E6C27_scaffold86G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 249.6 bits (636), Expect = 1.8e-62
Identity = 121/163 (74.23%), Postives = 143/163 (87.73%), Query Frame = 0


Query: 1   MEALFESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMD 60
           MEALFE LFEA YV+ EYL+PNIRYEGYD+S++ +FH+GVAGHV+QQC KFR KVQQLMD
Sbjct: 529 MEALFEGLFEAGYVSHEYLDPNIRYEGYDESRHCIFHRGVAGHVVQQCQKFRSKVQQLMD 588

Query: 61  AKILKVHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLTIFYQENRNESTSY-NPKILT 120
           +KIL V++GQGK+E+K SKIC   DEV  K+DSFLP+PLT+FYQE+RNESTS+ NPK LT
Sbjct: 589 SKILTVYRGQGKDEMKYSKICVLMDEVSEKKDSFLPRPLTVFYQESRNESTSFCNPKKLT 648

Query: 121 IRVPSPFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR 163
           I+VPSPF+FK LKAVPWRYDCQVI+G  +DNI  ISGITRSGR
Sbjct: 649 IQVPSPFKFKDLKAVPWRYDCQVITGPLVDNITEISGITRSGR 691

[Close]

BLAST of PI0017634 vs. NCBI nr
Match: TYK21788.1 (uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 249.6 bits (636), Expect = 1.8e-62
Identity = 119/158 (75.32%), Postives = 142/158 (89.87%), Query Frame = 0


Query: 6   ESLFEARYVNKEYLNPNIRYEGYDKSKYFVFHQGVAGHVIQQCYKFRFKVQQLMDAKILK 65
           E+LFEA YV+ EYL+PNIRYEGYD+S++ +FHQGVAGHV+QQC KFR KVQ+LMD+KIL 
Sbjct: 472 EALFEAGYVSHEYLDPNIRYEGYDESRHCIFHQGVAGHVVQQCQKFRSKVQELMDSKILT 531

Query: 66  VHKGQGKEEVKDSKICASTDEVVGKEDSFLPKPLTIFYQENRNESTSY-NPKILTIRVPS 125
           V++GQGK+E+KDSKICA  DEV  K+DSFLP+PLT+FYQE+ NESTS+ NPK LTI+VPS
Sbjct: 532 VYRGQGKDEMKDSKICALMDEVSEKKDSFLPRPLTVFYQESHNESTSFCNPKKLTIQVPS 591

Query: 126 PFQFKHLKAVPWRYDCQVISGHSIDNIRGISGITRSGR 163
           PF+FK LKAVPWRYDCQVI+G S+DNI GISGITRSGR
Sbjct: 592 PFKFKDLKAVPWRYDCQVITGPSVDNITGISGITRSGR 629

The following BLAST results are available for this feature:

BLAST of PI0017634 vs.


Match Name	E-value	Identity	Description

BLAST of PI0017634 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TRL7	8.1e-64	74.85	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00010...	[more]
A0A5A7VIM6	1.1e-63	75.46	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein...	[more]
A0A5A7T7R4	6.8e-63	73.62	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G00282...	[more]
A0A5A7T0H8	8.9e-63	74.23	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DEB3	8.9e-63	75.32	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of PI0017634 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046213.1	1.7e-63	74.85	uncharacterized protein E6C27_scaffold284G00010 [Cucumis melo var. makuwa]	[more]
KAA0067953.1	2.2e-63	75.46	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein...	[more]
KAA0037621.1	1.4e-62	73.62	uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa]	[more]
KAA0036942.1	1.8e-62	74.23	uncharacterized protein E6C27_scaffold86G00180 [Cucumis melo var. makuwa]	[more]
TYK21788.1	1.8e-62	75.32	uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa]	[more]

BLAST of PI0017634 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0017634.1	PI0017634.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity