PI0017492 (gene) Melon (PI 482460) v1

Overview
NamePI0017492
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionDNA-directed RNA polymerase
Locationchr06: 1948024 .. 1950331 (+)
RNA-Seq ExpressionPI0017492
SyntenyPI0017492
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTGGTGTTATTATCAATTGAGGTCCATCATGTCCCATCATTTCCTCCATTGCATTGAGTGAATATGCAATCCATCCAACTACAATATCCACAAGCCCAATGGCTTCCCCTCTAAAGAACCTCTTTTCCTTTAACTCTTCTTCCAAATGCTTCCAATTCTTCAAGGCTTCTTCTCTGCCCTCTTCTTTGTCTTGGTTTGATGTGAAGGCTTTCTTTATAGATGGCAAAAGCTACAAAGTACACACAACAAGGGTGAGTTTGAACTTATATTATTATTATTTCTTATTTTTGAGTCCATCGTGTCTGATGAATGTTGAAATTAACTAACGATAAAGTTATATAACATAACACTTGGTGAGTTGACAAAAATTTATTGTAATACTATTAAGTAGTTAGCGACAATCAATTGTCAAAACAATAATATGTAGCGAGCAATCTAACTACCATATCTTACTATTCTTAAATAAGTTCATGAGCCATTTAAGATCCTTTTACTTCACCTAACATTGAATGATTTTCAAATACCTTATCCTCAGCAAATTTGACCCAGAAGCGAGCAACGGCTTTCTCGTAAGGATCTTGAGAGAGCAATGGATTTTGGTTCCAAATTTCATCGATGTATTCGAGAATGATAAGCGGTTCAACGATTGGTTTTCCATCATGGAGCAACAATACAGGAACATTCTTGTGGATCGGATAATTGTTGTTCAGATCTTGATCTTCATAAACGGTGTCGTATTCTAACCCTTTCAACTTCAACGCCCATACTATTCTTAGAATGTACGGACTCGACGTTCTGATCAATAGCTTTAGTTTATCTCCCATTCTTTCTCCTCTCTCCAACTTCTTCTCCTTTCTCAAGTTTCATTTGTTTGCTTAAAACTAGTTTATATACAATAGAGATCATATACACATAGACCATCAACCAACCCTTGAAAATTATATTTTACTCTTAAAAAAAGACCCCTTAGTATTGTATTATGGTAGGGATGACTTGGGTATTATATGTAAATTAATTGATTGAGAGGTTCATCTACCGGGACTTGCATGTGAACTTCAAAATCGATAGAATTGAAAGGGTATGCGAGAGAATAGTAAGTAAACTCATTTTGTTAACCTTTCTCGTGGTCTGAAAGAACTTAGAAGGGTAGAATTCTTGTTTGCATTCGGCGAAAAGGTCAATGACGTGGAATTTAATATTCATAACAAATGCGGTTTGGTCTTTATCGGCGACAAGACAATTAGTTCAAAACGATACCCCTAGCCCTAGGCCCCTAGCCTCATGCATTGACTATTTTAATCTGAAGTTCTTACTATTCTCCCATACTGCAATAGGCTTTAATTTGGGTCTGATTAGCGTATATAGAAATTTTTTTTAAATTCTCAGTAAAAGGTATAGTAAAATCTATTTACGTTTACCTACAATAGATCAAATTGCAAATATCCGTCTATCATTAATAGACCATTAGAGTTTATTAGTAAATCATTCCATTTTAAGTCTCCTTATTTTTCAAAAAGGTTAAAAGAGAGAAAAAAAAAGAGAAGGGGAAAAATAAATAATTTAGTTAAAAAAAATTGATCTAAATTTTGGAAGTAACAATTTTGTCTATGAATAACTTTTAATTCGTGTATAGTTAGTTCACAATATTTCAATGGTGTGTGAATGATTCTTAAATGTCCAATTATGTATGTTAATGTGAGTTTATCTCAAATGATTGACATGTTCTTTTGATATGTTGAGAATTCTACATTGAAAAACTCAAAAGAACTCACTCCTTACCAATAGGCTACTCATACTATCAAATATGCTCTACCTCTTTAAAATGGTAGATTTCATCTCATCTTCATACAGTTATCGTACTATCTTTTTTCAAAAATAAATATCTTTTAAATCAATAATCGTCCTATATATTTATAAATCCATTACTATTTTAAATTAATTCTATATTTTCAATTTTCAATTGAGTATCAAATATGCTCTACCTCGTTCCAAAAGGTTGAACTTCAATCCCACCGTGATTGTTGTAATTTTAAATTTTTGAAAATCAAAATATATACATGGGAAAATTCTGTTGTACATTATGTTGGGCACAAAACAAAACCAAGTGTATAACTTGCATTCAAGGAAAGCGGATGTTGCTTTATTCCAAGCTTCCTTTCGAACACAGAAAGGAAATGAGAGGCAGAAGCAGAATAGTTTCTGAAATTTATCCCTTTTTTTCTGTTACAAAACCACTGGAAATGATAAATTTCGTGATCTTTGCTGCTACAGGCGGACATCTCAATCTTCATTTGCCAGGTCTGTGA

mRNA sequence

TTCTGGTGTTATTATCAATTGAGGTCCATCATGTCCCATCATTTCCTCCATTGCATTGAGTGAATATGCAATCCATCCAACTACAATATCCACAAGCCCAATGGCTTCCCCTCTAAAGAACCTCTTTTCCTTTAACTCTTCTTCCAAATGCTTCCAATTCTTCAAGGCTTCTTCTCTGCCCTCTTCTTTGTCTTGGTTTGATGTGAAGGCTTTCTTTATAGATGGCAAAAGCTACAAAGTACACACAACAAGGCAAATTTGACCCAGAAGCGAGCAACGGCTTTCTCGTAAGGATCTTGAGAGAGCAATGGATTTTGGTTCCAAATTTCATCGATGTATTCGAGAATGATAAGCGGTTCAACGATTGGTTTTCCATCATGGAGCAACAATACAGGAACATTCTTGTGGATCGGATAATTGTTGTTCAGATCTTGATCTTCATAAACGGCGGACATCTCAATCTTCATTTGCCAGGTCTGTGA

Coding sequence (CDS)

ATGGCAAAAGCTACAAAGTACACACAACAAGGCAAATTTGACCCAGAAGCGAGCAACGGCTTTCTCGTAAGGATCTTGAGAGAGCAATGGATTTTGGTTCCAAATTTCATCGATGTATTCGAGAATGATAAGCGGTTCAACGATTGGTTTTCCATCATGGAGCAACAATACAGGAACATTCTTGTGGATCGGATAATTGTTGTTCAGATCTTGATCTTCATAAACGGCGGACATCTCAATCTTCATTTGCCAGGTCTGTGA

Protein sequence

MAKATKYTQQGKFDPEASNGFLVRILREQWILVPNFIDVFENDKRFNDWFSIMEQQYRNILVDRIIVVQILIFINGGHLNLHLPGL
Homology
[Close]
BLAST of PI0017492 vs. ExPASy TrEMBL
Match: A0A0A0L953 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G126950 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.8e-29
Identity = 69/88 (78.41%), Postives = 78/88 (88.64%), Query Frame = 0 

Query: 1  MAKATKYTQQGKFDPEASNGFLVRILREQWILVPNFIDVFENDKRFNDWFSIMEQQYRNI 60
          MAKATKYTQ+GKFD EASN FLVRILR+QWIL PNF+DVFE+D+RFND FSIM+QQ+RNI
Sbjct: 1  MAKATKYTQKGKFDSEASNSFLVRILRKQWILAPNFVDVFEDDERFNDRFSIMKQQHRNI 60

Query: 61 LVDRIIV-VQILIFIN--GGHLNLHLPG 86
          LVDR+IV +QILI IN  G HLNLHL G
Sbjct: 61 LVDRVIVAIQILIIINATGSHLNLHLRG 88

[Close]
BLAST of PI0017492 vs. ExPASy TrEMBL
Match: A0A6N2N206 (DNA-directed RNA polymerase OS=Salix viminalis OX=40686 GN=SVIM_LOCUS450357 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.2e-05
Identity = 28/64 (43.75%), Postives = 45/64 (70.31%), Query Frame = 0 

Query: 11 GKFDPEASNGFLVRILREQWILVPNFIDVFENDKRFNDWFSIMEQQYRNILVDRIIVVQI 70
          GKFDPE S   LV ++R+QW+L P+ IDVF+N+    +W   ME ++R++LV+R+++ + 
Sbjct: 6  GKFDPETSLCSLVGVVRQQWVLGPHLIDVFDNNHGLANWLVAME-KHRDLLVNRVVLEKQ 65

Query: 71 LIFI 75
            FI
Sbjct: 66 RTFI 68

The following BLAST results are available for this feature:
BLAST of PI0017492 vs.
Match NameE-valueIdentityDescription
BLAST of PI0017492 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9535.8e-2978.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G126950 PE=4 SV=1[more]
A0A6N2N2061.2e-0543.75DNA-directed RNA polymerase OS=Salix viminalis OX=40686 GN=SVIM_LOCUS450357 PE=3... [more]
BLAST of PI0017492 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
BLAST of PI0017492 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0017492.1PI0017492.1mRNA