PI0017397 (gene) Melon (PI 482460) v1

Overview


Name	PI0017397
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	ROTUNDIFOLIA like 21
Location	chr06: 17126966 .. 17127314 (-)
RNA-Seq Expression	PI0017397
Synteny	PI0017397

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGAAGCACTAAGACCTCCATGGGAGAAGGCAAGATCAAGAAGGAGAAGAAGGTTTCATGGAGATCAAGATCATCTCTTGGAGGTTATATAAGAGAGCAAAAAGGAAGGCTTTACATTATTCGAAGTTGCATCGTAATGCTTCTTTGTTGGCACGACTGAATTTGACGATGTTCGATCTTCGTATCTCATTTCTCGCTCATCAAAAGGGCTCATGCTAATAGACATACTTTCAATGAGTTGAGGTTCAACTCCTCAACCTCATGGAGATCAGATCAAGATCATCTCTCTTTTTTGTTTACTTCATGCATCTTTTTCTCCACATTTTGCCATCTTCAAAATGTAA

mRNA sequence

ATGAGTAGAAGCACTAAGACCTCCATGGGAGAAGGCAAGATCAAGAAGGAGAAGAAGGTTTCATGGAGATCAAGATCATCTCTTGGAGGTTATATAAGAGAGCAAAAAGGAAGGCTTTACATTATTCGAAGTTGCATCATCATCTCTCTTTTTTGTTTACTTCATGCATCTTTTTCTCCACATTTTGCCATCTTCAAAATGTAA

Coding sequence (CDS)

ATGAGTAGAAGCACTAAGACCTCCATGGGAGAAGGCAAGATCAAGAAGGAGAAGAAGGTTTCATGGAGATCAAGATCATCTCTTGGAGGTTATATAAGAGAGCAAAAAGGAAGGCTTTACATTATTCGAAGTTGCATCATCATCTCTCTTTTTTGTTTACTTCATGCATCTTTTTCTCCACATTTTGCCATCTTCAAAATGTAA

Protein sequence

MSRSTKTSMGEGKIKKEKKVSWRSRSSLGGYIREQKGRLYIIRSCIIISLFCLLHASFSPHFAIFKM

Homology

[Close]

BLAST of PI0017397 vs. ExPASy TrEMBL
Match: A0A0A0L9S0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G265250 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.7e-15
Identity = 54/81 (66.67%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 1  MSRSTKTSMGEGKIKKEKKVSWRSRSSLGGYIREQKGRLYIIRSCIII------------ 60
          MSRSTKTSMG+G+IKK+KKVSWRSRSSLGGYI+EQKGRLYIIRSCI              
Sbjct: 1  MSRSTKTSMGDGRIKKDKKVSWRSRSSLGGYIKEQKGRLYIIRSCIRYFPRVEVQRNSWR 60

Query: 61 --SLFCLLHASFSPHFAIFKM 68
            S   L   S SPHFAIFKM
Sbjct: 61 SRSSPFLFTLSVSPHFAIFKM 81

[Close]

BLAST of PI0017397 vs. ExPASy TrEMBL
Match: A0A5D3CQM7 (ROTUNDIFOLIA like 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold90G00130 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.2e-15
Identity = 46/50 (92.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 1  MSRSTKTSMGEGKIKKEKKVSWRSRSSLGGYIREQKGRLYIIRSCIIISL 51
          MSRSTKTSMGEGK+KKEKKVSWRSRSSLGGYIREQKGRLYIIRSCI++ L
Sbjct: 1  MSRSTKTSMGEGKMKKEKKVSWRSRSSLGGYIREQKGRLYIIRSCIVMLL 50

[Close]

BLAST of PI0017397 vs. ExPASy TrEMBL
Match: A0A1S3CFH9 (uncharacterized protein LOC103500144 OS=Cucumis melo OX=3656 GN=LOC103500144 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.2e-15
Identity = 46/50 (92.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 1  MSRSTKTSMGEGKIKKEKKVSWRSRSSLGGYIREQKGRLYIIRSCIIISL 51
          MSRSTKTSMGEGK+KKEKKVSWRSRSSLGGYIREQKGRLYIIRSCI++ L
Sbjct: 1  MSRSTKTSMGEGKMKKEKKVSWRSRSSLGGYIREQKGRLYIIRSCIVMLL 50

[Close]

BLAST of PI0017397 vs. ExPASy TrEMBL
Match: A0A6J1F4S9 (uncharacterized protein LOC111442169 OS=Cucurbita moschata OX=3662 GN=LOC111442169 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.8e-07
Identity = 34/47 (72.34%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 9  MGEGKIK-----KEKKVSWRSRSSLGGYIREQKGRLYIIRSCIIISL 51
          MG+GK K     K KKVSWRSRSS G YIREQKGRLYIIRSCI++ L
Sbjct: 1  MGDGKNKNKIKNKNKKVSWRSRSSFGSYIREQKGRLYIIRSCIVMLL 47

[Close]

BLAST of PI0017397 vs. ExPASy TrEMBL
Match: A0A6J1IZ09 (uncharacterized protein LOC111481952 OS=Cucurbita maxima OX=3661 GN=LOC111481952 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.2e-06
Identity = 32/45 (71.11%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 9  MGEGKIK---KEKKVSWRSRSSLGGYIREQKGRLYIIRSCIIISL 51
          MG+ K K   K KKV WRSRSS G YIREQKGRLYIIRSCI++ L
Sbjct: 1  MGDRKNKNKNKNKKVLWRSRSSFGSYIREQKGRLYIIRSCIVMLL 45

[Close]

BLAST of PI0017397 vs. NCBI nr
Match: XP_008461574.1 (PREDICTED: uncharacterized protein LOC103500144 [Cucumis melo] >KAA0036139.1 ROTUNDIFOLIA like 21 [Cucumis melo var. makuwa] >TYK13498.1 ROTUNDIFOLIA like 21 [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 4.5e-15
Identity = 46/50 (92.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 1  MSRSTKTSMGEGKIKKEKKVSWRSRSSLGGYIREQKGRLYIIRSCIIISL 51
          MSRSTKTSMGEGK+KKEKKVSWRSRSSLGGYIREQKGRLYIIRSCI++ L
Sbjct: 1  MSRSTKTSMGEGKMKKEKKVSWRSRSSLGGYIREQKGRLYIIRSCIVMLL 50

[Close]

BLAST of PI0017397 vs. NCBI nr
Match: XP_011651363.1 (uncharacterized protein LOC105434872 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 5.0e-14
Identity = 43/50 (86.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 1  MSRSTKTSMGEGKIKKEKKVSWRSRSSLGGYIREQKGRLYIIRSCIIISL 51
          MSRSTKTSMG+G+IKK+KKVSWRSRSSLGGYI+EQKGRLYIIRSCI++ L
Sbjct: 1  MSRSTKTSMGDGRIKKDKKVSWRSRSSLGGYIKEQKGRLYIIRSCIVMLL 50

[Close]

BLAST of PI0017397 vs. NCBI nr
Match: KAE8650571.1 (hypothetical protein Csa_009769, partial [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 5.0e-14
Identity = 43/50 (86.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 1  MSRSTKTSMGEGKIKKEKKVSWRSRSSLGGYIREQKGRLYIIRSCIIISL 51
          MSRSTKTSMG+G+IKK+KKVSWRSRSSLGGYI+EQKGRLYIIRSCI++ L
Sbjct: 5  MSRSTKTSMGDGRIKKDKKVSWRSRSSLGGYIKEQKGRLYIIRSCIVMLL 54

[Close]

BLAST of PI0017397 vs. NCBI nr
Match: XP_038906924.1 (uncharacterized protein LOC120092787 [Benincasa hispida])

HSP 1 Score: 78.6 bits (192), Expect = 2.3e-11
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1  MSRS----TKTSMGEGKIKKEKKVSWRSRSSLGGYIREQKGRLYIIRSCIIISL 51
          MSRS    TKT+MGEGK KKEKKVSWRSRSSLGGYIREQKGRLYIIRSCI++ L
Sbjct: 1  MSRSTKVVTKTTMGEGK-KKEKKVSWRSRSSLGGYIREQKGRLYIIRSCIVMLL 53

[Close]

BLAST of PI0017397 vs. NCBI nr
Match: XP_023528694.1 (uncharacterized protein LOC111791542 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 64.3 bits (155), Expect = 4.5e-07
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 9  MGEGKIK---KEKKVSWRSRSSLGGYIREQKGRLYIIRSCIIISL 51
          MG+GK K   K KKVSWRSRSS G YIREQKGRLYIIRSCI++ L
Sbjct: 1  MGDGKNKNKNKNKKVSWRSRSSFGSYIREQKGRLYIIRSCIVMLL 45

The following BLAST results are available for this feature:

BLAST of PI0017397 vs.


Match Name	E-value	Identity	Description

BLAST of PI0017397 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9S0	1.7e-15	66.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G265250 PE=4 SV=1	[more]
A0A5D3CQM7	2.2e-15	92.00	ROTUNDIFOLIA like 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold90G...	[more]
A0A1S3CFH9	2.2e-15	92.00	uncharacterized protein LOC103500144 OS=Cucumis melo OX=3656 GN=LOC103500144 PE=...	[more]
A0A6J1F4S9	3.8e-07	72.34	uncharacterized protein LOC111442169 OS=Cucurbita moschata OX=3662 GN=LOC1114421...	[more]
A0A6J1IZ09	9.2e-06	71.11	uncharacterized protein LOC111481952 OS=Cucurbita maxima OX=3661 GN=LOC111481952...	[more]

BLAST of PI0017397 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461574.1	4.5e-15	92.00	PREDICTED: uncharacterized protein LOC103500144 [Cucumis melo] >KAA0036139.1 ROT...	[more]
XP_011651363.1	5.0e-14	86.00	uncharacterized protein LOC105434872 [Cucumis sativus]	[more]
KAE8650571.1	5.0e-14	86.00	hypothetical protein Csa_009769, partial [Cucumis sativus]	[more]
XP_038906924.1	2.3e-11	83.33	uncharacterized protein LOC120092787 [Benincasa hispida]	[more]
XP_023528694.1	4.5e-07	75.56	uncharacterized protein LOC111791542 [Cucurbita pepo subsp. pepo]	[more]

BLAST of PI0017397 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012552	DVL	PFAM	PF08137	DVL	coord: 33..47 e-value: 2.3E-5 score: 24.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0017397.1	PI0017397.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008285	negative regulation of cell population proliferation
biological_process	GO:0048367	shoot system development
cellular_component	GO:0005886	plasma membrane