PI0017388 (gene) Melon (PI 482460) v1

Overview


Name	PI0017388
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr03: 15924537 .. 15924746 (-)
RNA-Seq Expression	PI0017388
Synteny	PI0017388

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGTTCGTCGAGGGCCCCCAAGCATACGTGGACCAGAGAAGAAGAGTCAACCCTCGTGGAATGTCTGGTGGAGTTGGTATCCATGAAGGGGTGGAAATCGGACAACGGCACATTTCGACCCAGTTACTTGGCAATGATTATGCGAATTATGTCGGAAAAGCTCCCAGGGTGTACCATACAGGGGACTACGACTATTGACTGTTGA

mRNA sequence

ATGGCAAGTTCGTCGAGGGCCCCCAAGCATACGTGGACCAGAGAAGAAGAGTCAACCCTCGTGGAATGTCTGGTGGAGTTGGTATCCATGAAGGGGTGGAAATCGGACAACGGCACATTTCGACCCAGTTACTTGGCAATGATTATGCGAATTATGTCGGAAAAGCTCCCAGGGTGTACCATACAGGGGACTACGACTATTGACTGTTGA

Coding sequence (CDS)

ATGGCAAGTTCGTCGAGGGCCCCCAAGCATACGTGGACCAGAGAAGAAGAGTCAACCCTCGTGGAATGTCTGGTGGAGTTGGTATCCATGAAGGGGTGGAAATCGGACAACGGCACATTTCGACCCAGTTACTTGGCAATGATTATGCGAATTATGTCGGAAAAGCTCCCAGGGTGTACCATACAGGGGACTACGACTATTGACTGTTGA

Protein sequence

MASSSRAPKHTWTREEESTLVECLVELVSMKGWKSDNGTFRPSYLAMIMRIMSEKLPGCTIQGTTTIDC

Homology

[Close]

BLAST of PI0017388 vs. ExPASy TrEMBL
Match: A0A5D3CWL2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00640 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-23
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 1  MASSSRAPKHTWTREEESTLVECLVELVSMKGWKSDNGTFRPSYLAMIMRIMSEKLPGCT 60
          M++S+RAP+H WTREEE TLVECL+ELVSM GWKSDNGTFRP YLA ++R+M+EKLPGC 
Sbjct: 1  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61 IQGTTTIDC 70
          ++ TT IDC
Sbjct: 61 VRATTVIDC 69

[Close]

BLAST of PI0017388 vs. ExPASy TrEMBL
Match: A0A5A7TRV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00290 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-23
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 1  MASSSRAPKHTWTREEESTLVECLVELVSMKGWKSDNGTFRPSYLAMIMRIMSEKLPGCT 60
          M++S+RAP+H WTREEE TLVECL+ELVSM GWKSDNGTFRP YLA ++R+M+EKLPGC 
Sbjct: 1  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61 IQGTTTIDC 70
          ++ TT IDC
Sbjct: 61 VRATTVIDC 69

[Close]

BLAST of PI0017388 vs. ExPASy TrEMBL
Match: A0A5D3DCZ1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00020 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-23
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 1  MASSSRAPKHTWTREEESTLVECLVELVSMKGWKSDNGTFRPSYLAMIMRIMSEKLPGCT 60
          M++S+RAP+H WTREEE TLVECL+ELVSM GWKSDNGTFRP YLA ++R+M+EKLPGC 
Sbjct: 1  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61 IQGTTTIDC 70
          ++ TT IDC
Sbjct: 61 VRATTVIDC 69

[Close]

BLAST of PI0017388 vs. ExPASy TrEMBL
Match: A0A5D3BCN9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001070 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-23
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 1  MASSSRAPKHTWTREEESTLVECLVELVSMKGWKSDNGTFRPSYLAMIMRIMSEKLPGCT 60
          M++S+RAP+H WTREEE TLVECL+ELVSM GWKSDNGTFRP YLA ++R+M+EKLPGC 
Sbjct: 1  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61 IQGTTTIDC 70
          ++ TT IDC
Sbjct: 61 VRATTVIDC 69

[Close]

BLAST of PI0017388 vs. ExPASy TrEMBL
Match: A0A5A7TXW8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G001010 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-23
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 1  MASSSRAPKHTWTREEESTLVECLVELVSMKGWKSDNGTFRPSYLAMIMRIMSEKLPGCT 60
          M++S+RAP+H WTREEE TLVECL+ELVSM GWKSDNGTFRP YLA ++R+M+EKLPGC 
Sbjct: 1  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61 IQGTTTIDC 70
          ++ TT IDC
Sbjct: 61 VRATTVIDC 69

[Close]

BLAST of PI0017388 vs. NCBI nr
Match: KAA0038975.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 3.6e-23
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 1  MASSSRAPKHTWTREEESTLVECLVELVSMKGWKSDNGTFRPSYLAMIMRIMSEKLPGCT 60
          M++S+RAP+H WTREEE TLVECL+ELVSM GWKSDNGTFRP YLA ++R+M+EKLPGC 
Sbjct: 1  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61 IQGTTTIDC 70
          ++ TT IDC
Sbjct: 61 VRATTVIDC 69

[Close]

BLAST of PI0017388 vs. NCBI nr
Match: KAA0041588.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 3.6e-23
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 1  MASSSRAPKHTWTREEESTLVECLVELVSMKGWKSDNGTFRPSYLAMIMRIMSEKLPGCT 60
          M++S+RAP+H WTREEE TLVECL+ELVSM GWKSDNGTFRP YLA ++R+M+EKLPGC 
Sbjct: 1  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61 IQGTTTIDC 70
          ++ TT IDC
Sbjct: 61 VRATTVIDC 69

[Close]

BLAST of PI0017388 vs. NCBI nr
Match: KAA0046637.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 3.6e-23
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 1  MASSSRAPKHTWTREEESTLVECLVELVSMKGWKSDNGTFRPSYLAMIMRIMSEKLPGCT 60
          M++S+RAP+H WTREEE TLVECL+ELVSM GWKSDNGTFRP YLA ++R+M+EKLPGC 
Sbjct: 1  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61 IQGTTTIDC 70
          ++ TT IDC
Sbjct: 61 VRATTVIDC 69

[Close]

BLAST of PI0017388 vs. NCBI nr
Match: TYJ96194.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96764.1 retrotransposon protein [Cucumis melo var. makuwa] >TYJ97116.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK01046.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK12167.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 3.6e-23
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 1  MASSSRAPKHTWTREEESTLVECLVELVSMKGWKSDNGTFRPSYLAMIMRIMSEKLPGCT 60
          M++S+RAP+H WTREEE TLVECL+ELVSM GWKSDNGTFRP YLA ++R+M+EKLPGC 
Sbjct: 1  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61 IQGTTTIDC 70
          ++ TT IDC
Sbjct: 61 VRATTVIDC 69

[Close]

BLAST of PI0017388 vs. NCBI nr
Match: KAA0031555.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0036352.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0043921.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047622.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0049406.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 3.6e-23
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 1  MASSSRAPKHTWTREEESTLVECLVELVSMKGWKSDNGTFRPSYLAMIMRIMSEKLPGCT 60
          M++S+RAP+H WTREEE TLVECL+ELVSM GWKSDNGTFRP YLA ++R+M+EKLPGC 
Sbjct: 1  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61 IQGTTTIDC 70
          ++ TT IDC
Sbjct: 61 VRATTVIDC 69

The following BLAST results are available for this feature:

BLAST of PI0017388 vs.


Match Name	E-value	Identity	Description

BLAST of PI0017388 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CWL2	1.7e-23	72.46	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TRV1	1.7e-23	72.46	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DCZ1	1.7e-23	72.46	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BCN9	1.7e-23	72.46	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TXW8	1.7e-23	72.46	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0017388 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038975.1	3.6e-23	72.46	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0041588.1	3.6e-23	72.46	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0046637.1	3.6e-23	72.46	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ96194.1	3.6e-23	72.46	retrotransposon protein [Cucumis melo var. makuwa] >TYJ96764.1 retrotransposon p...	[more]
KAA0031555.1	3.6e-23	72.46	retrotransposon protein [Cucumis melo var. makuwa] >KAA0036352.1 retrotransposon...	[more]

BLAST of PI0017388 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 3..67
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 3..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0017388.1	PI0017388.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane