Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTCAAAACTAAGAATCAAAATGCTCGCGAACCTGAGCGAGCAAGTGGCGGAGCTCCCCACGAAGATGAAGGCTTTGGAGCCAGAGATAGACCTCGAGGTCATCGTTGAAGAACTCAAGGATGAGTTGGAGGCGATGAGCCCACTTGACCAAGGGCCACCGCCTAGAAAACAAAGGGAGGTCGTCGGACCATCCAAAGGAAAAAAGAAGAGTGGGAGCTCTGGACCTGAAGAGCACCCATCAGGCGGCGAAGCCAAAACAAAAACACCCTCAATCAACTCTTTCATAAAGGTTGAGAAAGGGTTGTTTCCCTTTAATGGCCCACTCCTAGACTTCCTCTACGCGCCTATCTAGGCGTTTGGATGGAAGAAACTCTTCAAGGGGCACACCAAGTTGCGACTGGGGGTGGTGGAAAAATTTTATGCGGCTAAACTCAATGTTGAGGAGTTTAGCGTTGAAATCAGTGGCAAGACGATGAACTTCAACGCAGAGGCCATCAACGATTTATACGAGTTGCCCAACGATGTTGAAATGCCTAGGCAAGAATACGTGGTTAGTCCCACAAGGAAAATGGCTCGTGAAGCGTTGGAAGTAATCGTTTGTCCTGGGGCCGCATGGGAAATCACGCCGACAGGGAAGTATCAGCTTTATCCACACCAGCTAACCATAGAGGCGAGCGTGTGGCTATTCTTCATAAAAAAGAAGATCTTCCCTACGCACCATGATAGCACCATTAACTTAGAGTCAACGATGCTACTCTGTTGTATAATGACGAAGAAGCGCGTTAATCTCGGTGATCTGATAGCTACATCCATCCTGTCTTAG
mRNA sequence
ATGAATTCAAAACTAAGAATCAAAATGCTCGCGAACCTGAGCGAGCAAGTGGCGGAGCTCCCCACGAAGATGAAGGCTTTGGAGCCAGAGATAGACCTCGAGGTCATCGTTGAAGAACTCAAGGATGAGTTGGAGGCGATGAGCCCACTTGACCAAGGGCCACCGCCTAGAAAACAAAGGGAGGTCGTCGGACCATCCAAAGGAAAAAAGAAGAGTGGGAGCTCTGGACCTGAAGAGCACCCATCAGGCGGCGAAGCCAAAACAAAAACACCCTCAATCAACTCTTTCATAAAGGCGTTTGGATGGAAGAAACTCTTCAAGGGGCACACCAAGTTGCGACTGGGGGTGGTGGAAAAATTTTATGCGGCTAAACTCAATGTTGAGGAGTTTAGCGTTGAAATCAGTGGCAAGACGATGAACTTCAACGCAGAGGCCATCAACGATTTATACGAGTTGCCCAACGATGTTGAAATGCCTAGGCAAGAATACGTGGTTAGTCCCACAAGGAAAATGGCTCGTGAAGCGTTGGAAGTAATCGTTTGTCCTGGGGCCGCATGGGAAATCACGCCGACAGGGAAGTATCAGCTTTATCCACACCAGCTAACCATAGAGGCGAGCGTGTGGCTATTCTTCATAAAAAAGAAGATCTTCCCTACGCACCATGATAGCACCATTAACTTAGAGTCAACGATGCTACTCTGTTGTATAATGACGAAGAAGCGCGTTAATCTCGGTGATCTGATAGCTACATCCATCCTGTCTTAG
Coding sequence (CDS)
ATGAATTCAAAACTAAGAATCAAAATGCTCGCGAACCTGAGCGAGCAAGTGGCGGAGCTCCCCACGAAGATGAAGGCTTTGGAGCCAGAGATAGACCTCGAGGTCATCGTTGAAGAACTCAAGGATGAGTTGGAGGCGATGAGCCCACTTGACCAAGGGCCACCGCCTAGAAAACAAAGGGAGGTCGTCGGACCATCCAAAGGAAAAAAGAAGAGTGGGAGCTCTGGACCTGAAGAGCACCCATCAGGCGGCGAAGCCAAAACAAAAACACCCTCAATCAACTCTTTCATAAAGGCGTTTGGATGGAAGAAACTCTTCAAGGGGCACACCAAGTTGCGACTGGGGGTGGTGGAAAAATTTTATGCGGCTAAACTCAATGTTGAGGAGTTTAGCGTTGAAATCAGTGGCAAGACGATGAACTTCAACGCAGAGGCCATCAACGATTTATACGAGTTGCCCAACGATGTTGAAATGCCTAGGCAAGAATACGTGGTTAGTCCCACAAGGAAAATGGCTCGTGAAGCGTTGGAAGTAATCGTTTGTCCTGGGGCCGCATGGGAAATCACGCCGACAGGGAAGTATCAGCTTTATCCACACCAGCTAACCATAGAGGCGAGCGTGTGGCTATTCTTCATAAAAAAGAAGATCTTCCCTACGCACCATGATAGCACCATTAACTTAGAGTCAACGATGCTACTCTGTTGTATAATGACGAAGAAGCGCGTTAATCTCGGTGATCTGATAGCTACATCCATCCTGTCTTAG
Protein sequence
MNSKLRIKMLANLSEQVAELPTKMKALEPEIDLEVIVEELKDELEAMSPLDQGPPPRKQREVVGPSKGKKKSGSSGPEEHPSGGEAKTKTPSINSFIKAFGWKKLFKGHTKLRLGVVEKFYAAKLNVEEFSVEISGKTMNFNAEAINDLYELPNDVEMPRQEYVVSPTRKMAREALEVIVCPGAAWEITPTGKYQLYPHQLTIEASVWLFFIKKKIFPTHHDSTINLESTMLLCCIMTKKRVNLGDLIATSILS
Homology
BLAST of PI0017363 vs. ExPASy TrEMBL
Match:
A0A5A7V6M5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G00020 PE=4 SV=1)
HSP 1 Score: 136.7 bits (343), Expect = 1.3e-28
Identity = 69/145 (47.59%), Postives = 96/145 (66.21%), Query Frame = 0
Query: 111 KLRLGVVEKFYAAKLNVEEFSVEISGKTMNFNAEAINDLYELPNDVEMPRQEYVVSPTRK 170
K+R+ VV KFY K N + + I + FN E IN+LY PND E QE V T+
Sbjct: 2 KIRMDVVHKFYDVKFNPSDLFITIEDEKFYFNVEVINELYNSPNDAEYLGQEIVTKSTKG 61
Query: 171 MAREALEVIVCPGAAWEITPTG-KYQLYPHQLTIEASVWLFFIKKKIFPTHHDSTINLES 230
+A+EAL+V+ PG E+ P +YQLYPH LT +A+VW+FF K KIFPT +DSTI+++
Sbjct: 62 LAKEALKVVAWPGIMSEVKPMKLRYQLYPH-LTTKANVWMFFTKNKIFPTCYDSTISMDY 121
Query: 231 TMLLCCIMTKKRVNLGDLIATSILS 255
T++L CIM KK +NL ++I +IL+
Sbjct: 122 TVILYCIMIKKAINLDEIIKAAILT 145
BLAST of PI0017363 vs. ExPASy TrEMBL
Match:
A0A5A7SQ81 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00070 PE=4 SV=1)
HSP 1 Score: 130.6 bits (327), Expect = 9.5e-27
Identity = 78/179 (43.58%), Postives = 101/179 (56.42%), Query Frame = 0
Query: 36 IVEELKDELEAMSPLDQGPPPRKQREVVGPSKGKKKSGSSGPEEHPSGGEAKTKTPSINS 95
+ EELK E+EAMS +E++ ++ G P EA++ P +
Sbjct: 17 LAEELKREVEAMS-----------QEMMTKGPHLRRRGRKPPSNMKREREARSALPHLKD 76
Query: 96 FIK----AFGWKKLFKGHTKLRLGVVEKFYAAKLNVEEFSVEISGKTMNFNAEAINDLYE 155
K AFGW+K FKG +K+RL VV KFYA+ N E+ + K+ FN EAIN LY
Sbjct: 77 ANKAIREAFGWRKFFKGTSKIRLEVVRKFYASDHNQAEYYAIMDEKSAYFNIEAINKLYN 136
Query: 156 LPNDVEMPRQEYVVSPTRKMAREALEVIVCPGAAWEITPTGKYQLYPHQLTIEASVWLF 211
P D E P + + ++ A EALE I GA ++ITPTGKY LYPHQLTIEASVWLF
Sbjct: 137 FPFDAETPDHVLITATLKRQAMEALETIAWLGAEYDITPTGKYLLYPHQLTIEASVWLF 184
BLAST of PI0017363 vs. ExPASy TrEMBL
Match:
A0A5A7TZE0 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001090 PE=4 SV=1)
HSP 1 Score: 119.4 bits (298), Expect = 2.2e-23
Identity = 94/273 (34.43%), Postives = 135/273 (49.45%), Query Frame = 0
Query: 5 LRIKMLANLSEQVAELPTKMKALEPEIDLEVIVEELKDELEAMSPLDQ---GPPPRKQRE 64
L+IK+ A + +AE + K E + +E + ELE +SPL+ P+K+R
Sbjct: 33 LKIKVKAQGVKALAEEKKERK----EKTTDEYSKEFEKELEELSPLEDRVVEKQPKKKRV 92
Query: 65 VVGPS--KGKKKSGSSGPEEHPSGGEA----------------------KTKTP-SINSF 124
+ G K +KK+ + E+ E K + P + S
Sbjct: 93 LEGQDAMKREKKNKTVQREQESQKSEQEGVLFAEELGKHFMIEKGIFPFKGQLPLFLTSP 152
Query: 125 IKAFGWKKLFKGHTKLRLGVVEKFYAAKLNVEEFSVEISGKTMNFNAEAINDLYEL-PND 184
IKA WK+ F+G T +R V+ FY +N E + GK +NF + +N LY L
Sbjct: 153 IKALKWKQFFEGVTTIRPSVMNLFYNGSINTERHYAIVKGKMVNFGPKVVNVLYGLRQTT 212
Query: 185 VEMPRQEYVVSPTRKMAREALEVIVCPGAAWEITPTGKYQLYPHQLTIEASVWLFFIKKK 244
VE P P+ + ALE + PG W+ITP KYQL+PH L ASVWL FIKK
Sbjct: 213 VEYP---IFKEPSDIDMQNALERVAWPGMKWDITPIKKYQLFPHNLKTTASVWLVFIKKN 272
Query: 245 IFPTHHDSTINLESTMLLCCIMTKKRVNLGDLI 249
+ PT HD+TI+LE MLL CIM + +N+ ++I
Sbjct: 273 LMPTRHDNTISLERIMLLYCIMEEIPLNVDEII 298
BLAST of PI0017363 vs. ExPASy TrEMBL
Match:
A0A5D3CVL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00870 PE=4 SV=1)
HSP 1 Score: 117.1 bits (292), Expect = 1.1e-22
Identity = 61/122 (50.00%), Postives = 81/122 (66.39%), Query Frame = 0
Query: 134 ISGKTMNFNAEAINDLYELPNDV-EMPRQEYVVSPTRKMAREALEVIVCPGAAWEITPTG 193
+ + + F E IN+LY+LPND+ P Q +V A++ +++IV P A TPT
Sbjct: 66 VEDEKVPFTTEEINELYDLPNDLGAYPGQRLIVDCREGDAKKIIKLIVWPEADCTSTPTR 125
Query: 194 KYQLYPHQLTIEASVWLFFIKKKIFPTHHDSTINLESTMLLCCIMTKKRVNLGDLIATSI 253
+ QL+PHQLTIEA+VWLFFIKKKIFPTHHDSTI E ++L CI KK NLG ++ +
Sbjct: 126 RLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYALVLYCINAKKPFNLGYVMNEAF 185
Query: 254 LS 255
LS
Sbjct: 186 LS 187
BLAST of PI0017363 vs. ExPASy TrEMBL
Match:
A0A5D3DES7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00570 PE=4 SV=1)
HSP 1 Score: 114.4 bits (285), Expect = 7.0e-22
Identity = 61/135 (45.19%), Postives = 83/135 (61.48%), Query Frame = 0
Query: 120 FYAAKLNVEEFSVEISGKTMNFNAEAINDLYELPNDVE-MPRQEYVVSPTRKMAREALEV 179
FYAAK + E V + K ++F E IN+LY L ND++ P Q + PT+ +R +++
Sbjct: 6 FYAAKYHSNESYVIVERKKVSFTMEEINELYGLLNDLDSYPSQSLIAEPTKGDSRMIIQL 65
Query: 180 IVCPGAAWEITPTGKYQLYPHQLTIEASVWLFFIKKKIFPTHHDSTINLESTMLLCCIMT 239
I GA W T T QLYPHQLT EA+VWL FIKKKI P +DST+ +E +LL C M
Sbjct: 66 IAWLGAGWTRTTTRSLQLYPHQLTTEANVWLLFIKKKIIPMCYDSTVPIEYMLLLYCKMA 125
Query: 240 KKRVNLGDLIATSIL 254
K+ NLG ++ + L
Sbjct: 126 KQPFNLGYMMNEAFL 140
BLAST of PI0017363 vs. NCBI nr
Match:
KAA0062900.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 136.7 bits (343), Expect = 2.7e-28
Identity = 69/145 (47.59%), Postives = 96/145 (66.21%), Query Frame = 0
Query: 111 KLRLGVVEKFYAAKLNVEEFSVEISGKTMNFNAEAINDLYELPNDVEMPRQEYVVSPTRK 170
K+R+ VV KFY K N + + I + FN E IN+LY PND E QE V T+
Sbjct: 2 KIRMDVVHKFYDVKFNPSDLFITIEDEKFYFNVEVINELYNSPNDAEYLGQEIVTKSTKG 61
Query: 171 MAREALEVIVCPGAAWEITPTG-KYQLYPHQLTIEASVWLFFIKKKIFPTHHDSTINLES 230
+A+EAL+V+ PG E+ P +YQLYPH LT +A+VW+FF K KIFPT +DSTI+++
Sbjct: 62 LAKEALKVVAWPGIMSEVKPMKLRYQLYPH-LTTKANVWMFFTKNKIFPTCYDSTISMDY 121
Query: 231 TMLLCCIMTKKRVNLGDLIATSILS 255
T++L CIM KK +NL ++I +IL+
Sbjct: 122 TVILYCIMIKKAINLDEIIKAAILT 145
BLAST of PI0017363 vs. NCBI nr
Match:
KAA0031701.1 (hypothetical protein E6C27_scaffold139G004850 [Cucumis melo var. makuwa] >TYK04411.1 hypothetical protein E5676_scaffold409G00070 [Cucumis melo var. makuwa])
HSP 1 Score: 130.6 bits (327), Expect = 2.0e-26
Identity = 78/179 (43.58%), Postives = 101/179 (56.42%), Query Frame = 0
Query: 36 IVEELKDELEAMSPLDQGPPPRKQREVVGPSKGKKKSGSSGPEEHPSGGEAKTKTPSINS 95
+ EELK E+EAMS +E++ ++ G P EA++ P +
Sbjct: 17 LAEELKREVEAMS-----------QEMMTKGPHLRRRGRKPPSNMKREREARSALPHLKD 76
Query: 96 FIK----AFGWKKLFKGHTKLRLGVVEKFYAAKLNVEEFSVEISGKTMNFNAEAINDLYE 155
K AFGW+K FKG +K+RL VV KFYA+ N E+ + K+ FN EAIN LY
Sbjct: 77 ANKAIREAFGWRKFFKGTSKIRLEVVRKFYASDHNQAEYYAIMDEKSAYFNIEAINKLYN 136
Query: 156 LPNDVEMPRQEYVVSPTRKMAREALEVIVCPGAAWEITPTGKYQLYPHQLTIEASVWLF 211
P D E P + + ++ A EALE I GA ++ITPTGKY LYPHQLTIEASVWLF
Sbjct: 137 FPFDAETPDHVLITATLKRQAMEALETIAWLGAEYDITPTGKYLLYPHQLTIEASVWLF 184
BLAST of PI0017363 vs. NCBI nr
Match:
KAA0048500.1 (protein MNN4-like [Cucumis melo var. makuwa] >TYK28291.1 protein MNN4-like [Cucumis melo var. makuwa])
HSP 1 Score: 119.4 bits (298), Expect = 4.5e-23
Identity = 94/273 (34.43%), Postives = 135/273 (49.45%), Query Frame = 0
Query: 5 LRIKMLANLSEQVAELPTKMKALEPEIDLEVIVEELKDELEAMSPLDQ---GPPPRKQRE 64
L+IK+ A + +AE + K E + +E + ELE +SPL+ P+K+R
Sbjct: 33 LKIKVKAQGVKALAEEKKERK----EKTTDEYSKEFEKELEELSPLEDRVVEKQPKKKRV 92
Query: 65 VVGPS--KGKKKSGSSGPEEHPSGGEA----------------------KTKTP-SINSF 124
+ G K +KK+ + E+ E K + P + S
Sbjct: 93 LEGQDAMKREKKNKTVQREQESQKSEQEGVLFAEELGKHFMIEKGIFPFKGQLPLFLTSP 152
Query: 125 IKAFGWKKLFKGHTKLRLGVVEKFYAAKLNVEEFSVEISGKTMNFNAEAINDLYEL-PND 184
IKA WK+ F+G T +R V+ FY +N E + GK +NF + +N LY L
Sbjct: 153 IKALKWKQFFEGVTTIRPSVMNLFYNGSINTERHYAIVKGKMVNFGPKVVNVLYGLRQTT 212
Query: 185 VEMPRQEYVVSPTRKMAREALEVIVCPGAAWEITPTGKYQLYPHQLTIEASVWLFFIKKK 244
VE P P+ + ALE + PG W+ITP KYQL+PH L ASVWL FIKK
Sbjct: 213 VEYP---IFKEPSDIDMQNALERVAWPGMKWDITPIKKYQLFPHNLKTTASVWLVFIKKN 272
Query: 245 IFPTHHDSTINLESTMLLCCIMTKKRVNLGDLI 249
+ PT HD+TI+LE MLL CIM + +N+ ++I
Sbjct: 273 LMPTRHDNTISLERIMLLYCIMEEIPLNVDEII 298
BLAST of PI0017363 vs. NCBI nr
Match:
TYK15967.1 (hypothetical protein E5676_scaffold94G00870 [Cucumis melo var. makuwa])
HSP 1 Score: 117.1 bits (292), Expect = 2.2e-22
Identity = 61/122 (50.00%), Postives = 81/122 (66.39%), Query Frame = 0
Query: 134 ISGKTMNFNAEAINDLYELPNDV-EMPRQEYVVSPTRKMAREALEVIVCPGAAWEITPTG 193
+ + + F E IN+LY+LPND+ P Q +V A++ +++IV P A TPT
Sbjct: 66 VEDEKVPFTTEEINELYDLPNDLGAYPGQRLIVDCREGDAKKIIKLIVWPEADCTSTPTR 125
Query: 194 KYQLYPHQLTIEASVWLFFIKKKIFPTHHDSTINLESTMLLCCIMTKKRVNLGDLIATSI 253
+ QL+PHQLTIEA+VWLFFIKKKIFPTHHDSTI E ++L CI KK NLG ++ +
Sbjct: 126 RLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYALVLYCINAKKPFNLGYVMNEAF 185
Query: 254 LS 255
LS
Sbjct: 186 LS 187
BLAST of PI0017363 vs. NCBI nr
Match:
TYK22187.1 (hypothetical protein E5676_scaffold333G00570 [Cucumis melo var. makuwa])
HSP 1 Score: 114.4 bits (285), Expect = 1.5e-21
Identity = 61/135 (45.19%), Postives = 83/135 (61.48%), Query Frame = 0
Query: 120 FYAAKLNVEEFSVEISGKTMNFNAEAINDLYELPNDVE-MPRQEYVVSPTRKMAREALEV 179
FYAAK + E V + K ++F E IN+LY L ND++ P Q + PT+ +R +++
Sbjct: 6 FYAAKYHSNESYVIVERKKVSFTMEEINELYGLLNDLDSYPSQSLIAEPTKGDSRMIIQL 65
Query: 180 IVCPGAAWEITPTGKYQLYPHQLTIEASVWLFFIKKKIFPTHHDSTINLESTMLLCCIMT 239
I GA W T T QLYPHQLT EA+VWL FIKKKI P +DST+ +E +LL C M
Sbjct: 66 IAWLGAGWTRTTTRSLQLYPHQLTTEANVWLLFIKKKIIPMCYDSTVPIEYMLLLYCKMA 125
Query: 240 KKRVNLGDLIATSIL 254
K+ NLG ++ + L
Sbjct: 126 KQPFNLGYMMNEAFL 140
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7V6M5 | 1.3e-28 | 47.59 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G0002... | [more] |
| A0A5A7SQ81 | 9.5e-27 | 43.58 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7TZE0 | 2.2e-23 | 34.43 | Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00... | [more] |
| A0A5D3CVL7 | 1.1e-22 | 50.00 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3DES7 | 7.0e-22 | 45.19 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0062900.1 | 2.7e-28 | 47.59 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
| KAA0031701.1 | 2.0e-26 | 43.58 | hypothetical protein E6C27_scaffold139G004850 [Cucumis melo var. makuwa] >TYK044... | [more] |
| KAA0048500.1 | 4.5e-23 | 34.43 | protein MNN4-like [Cucumis melo var. makuwa] >TYK28291.1 protein MNN4-like [Cucu... | [more] |
| TYK15967.1 | 2.2e-22 | 50.00 | hypothetical protein E5676_scaffold94G00870 [Cucumis melo var. makuwa] | [more] |
| TYK22187.1 | 1.5e-21 | 45.19 | hypothetical protein E5676_scaffold333G00570 [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
