PI0017346 (gene) Melon (PI 482460) v1

Overview
NamePI0017346
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionCACTA en-spm transposon protein
Locationchr05: 6092927 .. 6093733 (+)
RNA-Seq ExpressionPI0017346
SyntenyPI0017346
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGGACCATGTCAAAAGCGTCTAGCCGATGAACTAATTTGGGAAGCTAACACTTTGGCTACGGATCCCTCTATAGAGGCAGACAGGACCCCATCAGGTGATAGTAGTGTGTCTTAGTTTGAACAACTAAATATTATAGTAACCACTAATGGAAGTAGTATATTTGTTCTTTCTACAAGATCGAGTTTTAGAAAAAAAAATTAGCATGGGCGAGAGCATAGTCGAAACATTAGTTTAGATCTATATGTACAACGACATGGAAAGATCTTAATTACCATTACTGAGAATGTTCGAAAACTAGTTAGCGTCTTTTCTACAAAGTTTAGCAATGCTATTGGGAAAACGACTCGAGACACAATTTCATTGTGTTGTTCTAAGTGCAAAAATGTACCTAGCAATGCCATCGACAATATAAAGGCTCGTCTAGCTGTAAGTTTTTTATTTTTAATGTGCTAATCTCATACTCAGACTTACCATAACTTTTTGTTTCATATGTAGACACATTTTATTGTGGATCTGTCCTCAAGTGTCGTCCATAAGTACATACATCGGCAAATACAAGCCTCATTTAAAGAACATAGATCAGAACTACATAAGCACTACTATAAGTTTGAAAATCCTGTAATTGCTCGTGAAAGCCCATCGAACAGAAATTTTGGGGGGAGGTGTATATGTGTTCTAATTGTTTTTTTACATTACCTTGAGGCTAAATTTGTGCACTTGAAAGGAATTTTGTTCTTGTGTATTTGTAGGGGTTCAATTGTTGTGTTTTATGCTTTCATGACCATTGAATGTCCAGTTTAG

mRNA sequence

ATGGTGGGACCATGTCAAAAGCGTCTAGCCGATGAACTAATTTGGGAAGCTAACACTTTGGCTACGGATCCCTCTATAGAGGCAGACAGGACCCCATCAGTTAGCGTCTTTTCTACAAAGTTTAGCAATGCTATTGGGAAAACGACTCGAGACACAATTTCATTGTGTTGTTCTAAGTGCAAAAATGTACCTAGCAATGCCATCGACAATATAAAGGCTCGTCTAGCTACACATTTTATTGTGGATCTGTCCTCAAGTGTCGTCCATAAGTACATACATCGGCAAATACAAGCCTCATTTAAAGAACATAGATCAGAACTACATAAGCACTACTATAAGTTTGAAAATCCTGTAATTGCTCGTGAAAGCCCATCGAACAGAAATTTTGGGGGGAGGGGTTCAATTGTTGTGTTTTATGCTTTCATGACCATTGAATGTCCAGTTTAG

Coding sequence (CDS)

ATGGTGGGACCATGTCAAAAGCGTCTAGCCGATGAACTAATTTGGGAAGCTAACACTTTGGCTACGGATCCCTCTATAGAGGCAGACAGGACCCCATCAGTTAGCGTCTTTTCTACAAAGTTTAGCAATGCTATTGGGAAAACGACTCGAGACACAATTTCATTGTGTTGTTCTAAGTGCAAAAATGTACCTAGCAATGCCATCGACAATATAAAGGCTCGTCTAGCTACACATTTTATTGTGGATCTGTCCTCAAGTGTCGTCCATAAGTACATACATCGGCAAATACAAGCCTCATTTAAAGAACATAGATCAGAACTACATAAGCACTACTATAAGTTTGAAAATCCTGTAATTGCTCGTGAAAGCCCATCGAACAGAAATTTTGGGGGGAGGGGTTCAATTGTTGTGTTTTATGCTTTCATGACCATTGAATGTCCAGTTTAG

Protein sequence

MVGPCQKRLADELIWEANTLATDPSIEADRTPSVSVFSTKFSNAIGKTTRDTISLCCSKCKNVPSNAIDNIKARLATHFIVDLSSSVVHKYIHRQIQASFKEHRSELHKHYYKFENPVIARESPSNRNFGGRGSIVVFYAFMTIECPV
Homology
BLAST of PI0017346 vs. ExPASy TrEMBL
Match: A0A5D3BM75 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00400 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.6e-10
Identity = 50/131 (38.17%), Postives = 68/131 (51.91%), Query Frame = 0

Query: 1   MVGPCQKRLADELIWEANTLATDPSIEADRTPS--------------------------- 60
           M+G  Q  LADEL+ +ANTL  DPS + D +                             
Sbjct: 1   MMGQRQDCLADELVRKANTLTMDPSTKGDSSSKTKKKCWHWHSRNINVDMYVQRHEKILI 60

Query: 61  ---------VSVFSTKFSNAIGKTTRDTISLCCSKCKNVPSNAIDNIKARLATHFIVDLS 96
                    V VF+TKFSNAIG  TRDTIS+ CSK K+V S+ I  IKARL  +F+V +S
Sbjct: 61  TIHEKVGKLVGVFATKFSNAIGTATRDTISVHCSKWKDVSSDVIVTIKARLQPYFVVCMS 120

BLAST of PI0017346 vs. ExPASy TrEMBL
Match: A0A5A7T4S0 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G002410 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.6e-10
Identity = 50/129 (38.76%), Postives = 66/129 (51.16%), Query Frame = 0

Query: 3   GPCQKRLADELIWEANTLATDPSIEAD---------------------------RTP--- 62
           G  + RLADEL+ EAN LA   +IE D                           R P   
Sbjct: 64  GRMEDRLADELVREANLLAMGFTIEGDSCSGTKRKCGHEHSRNISLDMYVQRHGRIPITN 123

Query: 63  ------SVSVFSTKFSNAIGKTTRDTISLCCSKCKNVPSNAIDNIKARLATHFIVDLSSS 96
                  +SVF+TKF NAIG  T+DTI +CCSK K+  S+ I  IKA   THF+V +SS 
Sbjct: 124 DEMVGKPISVFATKFCNAIGTATQDTILVCCSKWKDGFSDVISTIKAHQQTHFVVGMSSI 183

BLAST of PI0017346 vs. ExPASy TrEMBL
Match: A0A5A7SMM8 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G00980 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 6.1e-10
Identity = 49/130 (37.69%), Postives = 67/130 (51.54%), Query Frame = 0

Query: 2   VGPCQKRLADELIWEANTLATDPSIEADRTPS---------------------------- 61
           +G  Q  LADEL+ +ANTL  DPS + D +                              
Sbjct: 1   MGQRQDCLADELVRKANTLTMDPSTKGDSSSKTKKKCWHWHSRNINVDMYVQRHEKILIT 60

Query: 62  --------VSVFSTKFSNAIGKTTRDTISLCCSKCKNVPSNAIDNIKARLATHFIVDLSS 96
                   V VF+TKFSNAIG  TRDTIS+ CSK K+V S+ I  IKARL  +F+V +SS
Sbjct: 61  IHEKVGKLVGVFATKFSNAIGTATRDTISVHCSKWKDVSSDVIVTIKARLQPYFVVCMSS 120

BLAST of PI0017346 vs. ExPASy TrEMBL
Match: A0A5A7TFG0 (Transposon protein, putative, CACTA, En/Spm sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold768G00210 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.2e-09
Identity = 39/102 (38.24%), Postives = 59/102 (57.84%), Query Frame = 0

Query: 26  IEADRTPSVSVFSTKFSNAIGKTTRDTISLCCSKCKNVPSNAIDNIKARLATHFIVDLSS 85
           I  +    V+ F+ K +  IG   R+TI L C   K VP    + +  RL THF  D ++
Sbjct: 699 INEEEGKPVTTFAPKIALGIGTALRNTIPLSCENWKAVPMGVRELVIDRLETHFEFDPTN 758

Query: 86  SVVHKYIHRQIQASFKEHRSELHKHYYKFENPVIARESPSNR 128
            VV KY+  ++Q  F+E R++LHK+Y +F++ V AR +P NR
Sbjct: 759 MVVRKYLEEKMQNIFREFRADLHKYYCQFDDSVEARANPPNR 800

BLAST of PI0017346 vs. ExPASy TrEMBL
Match: A0A5A7TRX4 (DUF4216 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G001040 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.6e-08
Identity = 38/102 (37.25%), Postives = 59/102 (57.84%), Query Frame = 0

Query: 26  IEADRTPSVSVFSTKFSNAIGKTTRDTISLCCSKCKNVPSNAIDNIKARLATHFIVDLSS 85
           I  +    V+ F+ K +  IG   R+TI L C   K VP    + +   L THF  D ++
Sbjct: 719 INEEEGKPVTTFAPKIALGIGTAVRNTIPLSCENWKAVPMGVRELVIDWLETHFEFDPTN 778

Query: 86  SVVHKYIHRQIQASFKEHRSELHKHYYKFENPVIARESPSNR 128
            VV KY+  ++Q +F+E R++LHK+Y +F++ V AR +P NR
Sbjct: 779 MVVRKYLEEKMQNTFREFRADLHKYYCQFDDLVEARANPRNR 820

BLAST of PI0017346 vs. NCBI nr
Match: TYK00374.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 3.3e-10
Identity = 50/131 (38.17%), Postives = 68/131 (51.91%), Query Frame = 0

Query: 1   MVGPCQKRLADELIWEANTLATDPSIEADRTPS--------------------------- 60
           M+G  Q  LADEL+ +ANTL  DPS + D +                             
Sbjct: 1   MMGQRQDCLADELVRKANTLTMDPSTKGDSSSKTKKKCWHWHSRNINVDMYVQRHEKILI 60

Query: 61  ---------VSVFSTKFSNAIGKTTRDTISLCCSKCKNVPSNAIDNIKARLATHFIVDLS 96
                    V VF+TKFSNAIG  TRDTIS+ CSK K+V S+ I  IKARL  +F+V +S
Sbjct: 61  TIHEKVGKLVGVFATKFSNAIGTATRDTISVHCSKWKDVSSDVIVTIKARLQPYFVVCMS 120

BLAST of PI0017346 vs. NCBI nr
Match: KAA0038360.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 7.4e-10
Identity = 50/129 (38.76%), Postives = 66/129 (51.16%), Query Frame = 0

Query: 3   GPCQKRLADELIWEANTLATDPSIEAD---------------------------RTP--- 62
           G  + RLADEL+ EAN LA   +IE D                           R P   
Sbjct: 64  GRMEDRLADELVREANLLAMGFTIEGDSCSGTKRKCGHEHSRNISLDMYVQRHGRIPITN 123

Query: 63  ------SVSVFSTKFSNAIGKTTRDTISLCCSKCKNVPSNAIDNIKARLATHFIVDLSSS 96
                  +SVF+TKF NAIG  T+DTI +CCSK K+  S+ I  IKA   THF+V +SS 
Sbjct: 124 DEMVGKPISVFATKFCNAIGTATQDTILVCCSKWKDGFSDVISTIKAHQQTHFVVGMSSI 183

BLAST of PI0017346 vs. NCBI nr
Match: KAA0025491.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-09
Identity = 49/130 (37.69%), Postives = 67/130 (51.54%), Query Frame = 0

Query: 2   VGPCQKRLADELIWEANTLATDPSIEADRTPS---------------------------- 61
           +G  Q  LADEL+ +ANTL  DPS + D +                              
Sbjct: 1   MGQRQDCLADELVRKANTLTMDPSTKGDSSSKTKKKCWHWHSRNINVDMYVQRHEKILIT 60

Query: 62  --------VSVFSTKFSNAIGKTTRDTISLCCSKCKNVPSNAIDNIKARLATHFIVDLSS 96
                   V VF+TKFSNAIG  TRDTIS+ CSK K+V S+ I  IKARL  +F+V +SS
Sbjct: 61  IHEKVGKLVGVFATKFSNAIGTATRDTISVHCSKWKDVSSDVIVTIKARLQPYFVVCMSS 120

BLAST of PI0017346 vs. NCBI nr
Match: KAA0040145.1 (transposon protein, putative, CACTA, En/Spm sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-08
Identity = 39/102 (38.24%), Postives = 59/102 (57.84%), Query Frame = 0

Query: 26  IEADRTPSVSVFSTKFSNAIGKTTRDTISLCCSKCKNVPSNAIDNIKARLATHFIVDLSS 85
           I  +    V+ F+ K +  IG   R+TI L C   K VP    + +  RL THF  D ++
Sbjct: 699 INEEEGKPVTTFAPKIALGIGTALRNTIPLSCENWKAVPMGVRELVIDRLETHFEFDPTN 758

Query: 86  SVVHKYIHRQIQASFKEHRSELHKHYYKFENPVIARESPSNR 128
            VV KY+  ++Q  F+E R++LHK+Y +F++ V AR +P NR
Sbjct: 759 MVVRKYLEEKMQNIFREFRADLHKYYCQFDDSVEARANPPNR 800

BLAST of PI0017346 vs. NCBI nr
Match: XP_038887409.1 (poly [ADP-ribose] polymerase 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-08
Identity = 37/90 (41.11%), Postives = 56/90 (62.22%), Query Frame = 0

Query: 38  STKFSNAIGKTTRDTISLCCSKCKNVPSNAIDNIKARLATHFIVDLSSSVVHKYIHRQIQ 97
           +TKFSNAIG   R+TI L C    +V     D +  +L ++F  D+    V KY+ +++Q
Sbjct: 605 ATKFSNAIGTIARNTIPLRCKDWSDVSKEVRDLVVDQLLSYFDFDVGKKHVKKYVLQRVQ 664

Query: 98  ASFKEHRSELHKHYYKFENPVIARESPSNR 128
            +FKE+RS+L+KHY +F++P  AR  P  R
Sbjct: 665 NTFKEYRSDLYKHYRRFKDPKEARACPPKR 694

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BM751.6e-1038.17CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7T4S03.6e-1038.76CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7SMM86.1e-1037.69CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7TFG05.2e-0938.24Transposon protein, putative, CACTA, En/Spm sub-class OS=Cucumis melo var. makuw... [more]
A0A5A7TRX42.6e-0837.25DUF4216 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
Match NameE-valueIdentityDescription
TYK00374.13.3e-1038.17CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0038360.17.4e-1038.76CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0025491.11.3e-0937.69CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0040145.11.1e-0838.24transposon protein, putative, CACTA, En/Spm sub-class [Cucumis melo var. makuwa][more]
XP_038887409.11.8e-0841.11poly [ADP-ribose] polymerase 1-like isoform X2 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0017346.1PI0017346.1mRNA