PI0017267 (gene) Melon (PI 482460) v1

Overview


Name	PI0017267
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr12: 5168250 .. 5170398 (-)
RNA-Seq Expression	PI0017267
Synteny	PI0017267

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACGTCTTCAAGGGCCCCCAAGCACCACTGGACGAAAGAGGAGGACTCCGCACTCGTTGAATGTCTTGTGGAGTTGGTATCTTCCGACGGGTGGAAGTCGGATAACGGGACTTTTAGACCCGGATACCATAGTCATCTACACTGAATGCTTGCTGCCAGGATGGCCGGACATAACATAACGGCTACGACAATAGATTGTCGGATAAAGACATTGAAAAGAGCGTTCCAAGCAATATCTGAGATGAAGGGCCCGACATGTAGTGGGTTCGGTTGGAATGATGAGCAGAAATGCATCATTGCCGAGAAAGACTTGTTCGACAGTTGGGTGAAGGTATGTTCTTTATTCTGTCAGTTACTGTTCCTTTCTAATTATAAATTGTCTAATTTGTTATCATAACAACACGTGTACAGAGTCATCCAGCCGCAAAGGGGCTCCTGAACAAACCCTTTCCCCACTACGACGACCTCTGCTACGTGTTCGGAAGAGATCGTGCAACAGGAGGTCGATCTGAAACCTTCGGTGATGTTGGGTCGAACGTGCCTCCAGGCTTCGAAGGGTTTGCCCAGTACGACGGAAACGATGTGGAGAACCCGACGATGTGCAGTCAGGGCCTAGACATGTCACCTGACGACATAATGACTCCAAGATCGGTTCGTATGTCTGAGGGTAGGCCTGGTTCGAGCGGGTCGAAGAGGAAACATGGAGGGCAGGCATTGGAGGCGGCTGAAATAATTCGCAGTGCCATGGAATATGCAAATGACCAACTTAAGGCAATTGCAGATTGGCCCAAAGAACAACGACAAGATGCAAGTGTGACACGTGCGGAAATCGTTAGACAGCTACAGGGAATGTCGGAGCTGAGTCGACTAGATAGGGCTCGTTGTATGCGCATATTGATGCGCAGCGTGGATGACATGAAAGCATTTTTAGACGTCCCGGACGAGCTTAAGTTGGATTACTGCACGATCGTACTCCAGGATGACGCTTGACAGCTTCATGACTTTATTTGTAGGGCGAGTTTATGTTGATTTTAATCATTTGCTAAACCTCTTTGTTATGTTTGGTTCTTTGCCACGTTTGTTTAAGTTTCCTTACCTTTTGTTCGAACTATCATTGCTTGCTTATGAACTACTTTTTATTTATGAATGATATAATTGTTATTTGGTGACGTTATGATTTTACAATTGTGAACGGAAAAAAACAAACAAATTGAAATTTTTTTTAACGAGTTTAATACAAAATTTGCGAAATAGACTCGGTGCGATGGAAAATAATGGAAACCCTAATTATGAAAAATTATTTGGCGGTTAATTAAAATCAATGTATAATTTTGCTCAATTCTATTACTTAAAAAAAAAAATTATATCATCCACTAATATCATAACCCTTCCCCCAAACACATATTATCATAACACTACCTAACATAACCCTTCCCCCAAACACATATTATCATAACACTACCTAACATAACCCTTCTCCCAAACACATACTATCATAAAACTAGTTTTATCATAACACTAACCCTCCATAAGTCACTCCTTCTCCCAAACGGCCCCTAAGTTTGATAAAATACAAATTTGCAGGAAAATAAGTTTGAGTTTGAAATGGAAGGTTAAAATGGTAAAACTATATAAAATTTGAAACTAAAATTGCATCGATTGGTTTTAAAATTTGAAAAAGAAAAATAATAAAATAAAAGAATTTGAAAAAGGAAAAAGAAAATAGTAAGGAGTAAATTAATTATTATTATAGTGGAAGAGGAGAGAGGGGCAGAAAAAGAAGGCGATTTCCGAGGCAGAGGGTGTACAGTCTTAAGTCTAGTCGTAGGATTAGGAAACACGTCAACCAACGTCACTACAAACACCGCGCCTCCGCCATATTTTCTGCCTTTCTCACACCGCGCCTTCTTCAAACTTTCACTCACCTCCTTCCTTTCTCTCATTCTCACTCTCTTATTAACTTAATAACTTCTAATATTAAAAAATAAAAATAATAAAAATACTATTTTCAATTCATGTATTTTGATTTCTGTTTCTTACAAAATATTTTTTTAATCCTTCAACTTTTAATATTACATTCATTTCCTCGTTCCAACAATAGATTTAAATGGTTCTTCACTTCCTATACAAGTGTTAAATACTAA

mRNA sequence

ATGGCAACGTCTTCAAGGGCCCCCAAGCACCACTGGACGAAAGAGGAGGACTCCGCACTCGTTGAATGTCTTGTGGAGTTGGTATCTTCCGACGGGTGGAAGTCGGATAACGGGACTTTTAGACCCGGATACCATAATTGTCGGATAAAGACATTGAAAAGAGCGTTCCAAGCAATATCTGAGATGAAGGGCCCGACATGTAGTGGGTTCGGTTGGAATGATGAGCAGAAATGCATCATTGCCGAGAAAGACTTGTTCGACAGTTGGGTGAAGAGTCATCCAGCCGCAAAGGGGCTCCTGAACAAACCCTTTCCCCACTACGACGACCTCTGCTACGTGTTCGGAAGAGATCGTGCAACAGGAGGTCGATCTGAAACCTTCGGTGATGTTGGGTCGAACGTGCCTCCAGGCTTCGAAGGGTTTGCCCAGTACGACGGAAACGATGTGGAGAACCCGACGATGTGCAGTCAGGGCCTAGACATGTCACCTGACGACATAATGACTCCAAGATCGGTTCGTATGTCTGAGGGTAGGCCTGGTTCGAGCGGGTCGAAGAGGAAACATGGAGGGCAGGCATTGGAGGCGGCTGAAATAATTCGCAGTGCCATGGAATATGCAAATGACCAACTTAAGGCAATTGCAGATTGGCCCAAAGAACAACGACAAGATGCAAGTGTGACACGTGCGGAAATCGTTAGACAGCTACAGGGAATGTCGGAGCTGAGTCGACTAGATAGGGCTCGTTGTATGCGCATATTGATGCGCAGCGTGGATGACATGAAAGCATTTTTAGACGTCCCGGACGAGCTTAATGTTAAATACTAA

Coding sequence (CDS)

ATGGCAACGTCTTCAAGGGCCCCCAAGCACCACTGGACGAAAGAGGAGGACTCCGCACTCGTTGAATGTCTTGTGGAGTTGGTATCTTCCGACGGGTGGAAGTCGGATAACGGGACTTTTAGACCCGGATACCATAATTGTCGGATAAAGACATTGAAAAGAGCGTTCCAAGCAATATCTGAGATGAAGGGCCCGACATGTAGTGGGTTCGGTTGGAATGATGAGCAGAAATGCATCATTGCCGAGAAAGACTTGTTCGACAGTTGGGTGAAGAGTCATCCAGCCGCAAAGGGGCTCCTGAACAAACCCTTTCCCCACTACGACGACCTCTGCTACGTGTTCGGAAGAGATCGTGCAACAGGAGGTCGATCTGAAACCTTCGGTGATGTTGGGTCGAACGTGCCTCCAGGCTTCGAAGGGTTTGCCCAGTACGACGGAAACGATGTGGAGAACCCGACGATGTGCAGTCAGGGCCTAGACATGTCACCTGACGACATAATGACTCCAAGATCGGTTCGTATGTCTGAGGGTAGGCCTGGTTCGAGCGGGTCGAAGAGGAAACATGGAGGGCAGGCATTGGAGGCGGCTGAAATAATTCGCAGTGCCATGGAATATGCAAATGACCAACTTAAGGCAATTGCAGATTGGCCCAAAGAACAACGACAAGATGCAAGTGTGACACGTGCGGAAATCGTTAGACAGCTACAGGGAATGTCGGAGCTGAGTCGACTAGATAGGGCTCGTTGTATGCGCATATTGATGCGCAGCGTGGATGACATGAAAGCATTTTTAGACGTCCCGGACGAGCTTAATGTTAAATACTAA

Protein sequence

MATSSRAPKHHWTKEEDSALVECLVELVSSDGWKSDNGTFRPGYHNCRIKTLKRAFQAISEMKGPTCSGFGWNDEQKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATGGRSETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGLDMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIADWPKEQRQDASVTRAEIVRQLQGMSELSRLDRARCMRILMRSVDDMKAFLDVPDELNVKY

Homology

[Close]

BLAST of PI0017267 vs. ExPASy TrEMBL
Match: A0A5D3DPR5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00580 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 3.7e-93
Identity = 173/295 (58.64%), Postives = 215/295 (72.88%), Query Frame = 0


Query: 1   MATSSRAPKHHWTKEEDSALVECLVELVSSDGWKSDNGTFRPGYHN-------------- 60
           M +SSR PKH WTKEE++ LVECLVELV++ GW+SDNGTFRPGY N              
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  -------CRIKTLKRAFQAISEMKGPTCSGFGWNDEQKCIIAEKDLFDSWVKSHPAAKGL 120
                   RIK +KR F A++EM+GP CSGFGWNDE+KCI+AEK++FD W  SHPAAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKPFPHYDDLCYVFGRDRATGGRSETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGL 180
           LNK F HYD+L YVFG+DRATGGR+E+F D+GSN PPG++  A     D + P M S GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAVAADAMPDTDFPPMYSPGL 180

Query: 181 DMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIADWPKE 240
           +MSPDD+M  R+ R+SE R  SSGSKRK  G A ++ +I+R+A+EY N+QL  IA+WP  
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

Query: 241 QRQDASVTRAEIVRQLQGMSELSRLDRARCMRILMRSVDDMKAFLDVPDELNVKY 275
           QRQDA+ TR EIVR L+ + EL+ +DR R MRILMR+VDDMKAFL+VPD +   Y
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPY 293

[Close]

BLAST of PI0017267 vs. ExPASy TrEMBL
Match: A0A5A7UME4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold615G00290 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 6.3e-93
Identity = 173/295 (58.64%), Postives = 215/295 (72.88%), Query Frame = 0


Query: 1   MATSSRAPKHHWTKEEDSALVECLVELVSSDGWKSDNGTFRPGYHN-------------- 60
           M +SSR PKH WTKEE++ LVECLVELV++ GW+SDNGTFRPGY N              
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  -------CRIKTLKRAFQAISEMKGPTCSGFGWNDEQKCIIAEKDLFDSWVKSHPAAKGL 120
                   RIK +KR F A++EM+GP CSGFGWNDE+KCI+AEK++FD W  SHPAAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKPFPHYDDLCYVFGRDRATGGRSETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGL 180
           LNK F HYD+L YVFG+DRATGGR+E+F D+GSN PPG++  A     D + P M S GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAEAADAMPDTDFPPMYSPGL 180

Query: 181 DMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIADWPKE 240
           +MSPDD+M  R+ R+SE R  SSGSKRK  G A ++ +I+R+A+EY N+QL  IA+WP  
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

Query: 241 QRQDASVTRAEIVRQLQGMSELSRLDRARCMRILMRSVDDMKAFLDVPDELNVKY 275
           QRQDA+ TR EIVR L+ + EL+ +DR R MRILMR+VDDMKAFL+VPD +   Y
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPY 293

[Close]

BLAST of PI0017267 vs. ExPASy TrEMBL
Match: A0A5D3CBF7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00350 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 6.3e-93
Identity = 173/295 (58.64%), Postives = 215/295 (72.88%), Query Frame = 0


Query: 1   MATSSRAPKHHWTKEEDSALVECLVELVSSDGWKSDNGTFRPGYHN-------------- 60
           M +SSR PKH WTKEE++ LVECLVELV++ GW+SDNGTFRPGY N              
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  -------CRIKTLKRAFQAISEMKGPTCSGFGWNDEQKCIIAEKDLFDSWVKSHPAAKGL 120
                   RIK +KR F A++EM+GP CSGFGWNDE+KCI+AEK++FD W  SHPAAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKPFPHYDDLCYVFGRDRATGGRSETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGL 180
           LNK F HYD+L YVFG+DRATGGR+E+F D+GSN PPG++  A     D + P M S GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 180

Query: 181 DMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIADWPKE 240
           +MSPDD+M  R+ R+SE R  SSGSKRK  G A ++ +I+R+A+EY N+QL  IA+WP  
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

Query: 241 QRQDASVTRAEIVRQLQGMSELSRLDRARCMRILMRSVDDMKAFLDVPDELNVKY 275
           QRQDA+ TR EIVR L+ + EL+ +DR R MRILMR+VDDMKAFL+VPD +   Y
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPY 293

[Close]

BLAST of PI0017267 vs. ExPASy TrEMBL
Match: E5GCB5 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 6.3e-93
Identity = 173/295 (58.64%), Postives = 215/295 (72.88%), Query Frame = 0


Query: 1   MATSSRAPKHHWTKEEDSALVECLVELVSSDGWKSDNGTFRPGYHN-------------- 60
           M +SSR PKH WTKEE++ LVECLVELV++ GW+SDNGTFRPGY N              
Sbjct: 356 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 415

Query: 61  -------CRIKTLKRAFQAISEMKGPTCSGFGWNDEQKCIIAEKDLFDSWVKSHPAAKGL 120
                   RIK +KR F A++EM+GP CSGFGWNDE+KCI+AEK++FD W  SHPAAKGL
Sbjct: 416 IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 475

Query: 121 LNKPFPHYDDLCYVFGRDRATGGRSETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGL 180
           LNK F HYD+L YVFG+DRATGGR+E+F D+GSN PPG++  A     D + P M S GL
Sbjct: 476 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 535

Query: 181 DMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIADWPKE 240
           +MSPDD+M  R+ R+SE R  SSGSKRK  G A ++ +I+R+A+EY N+QL  IA+WP  
Sbjct: 536 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 595

Query: 241 QRQDASVTRAEIVRQLQGMSELSRLDRARCMRILMRSVDDMKAFLDVPDELNVKY 275
           QRQDA+ TR EIVR L+ + EL+ +DR R MRILMR+VDDMKAFL+VPD +   Y
Sbjct: 596 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPY 648

[Close]

BLAST of PI0017267 vs. ExPASy TrEMBL
Match: A0A5A7U6Z3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold678G00120 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 1.5e-91
Identity = 171/295 (57.97%), Postives = 214/295 (72.54%), Query Frame = 0


Query: 1   MATSSRAPKHHWTKEEDSALVECLVELVSSDGWKSDNGTFRPGYHN-------------- 60
           M +SSR PKH WTKEE++ LVECLVELV++ GW+S+NGTFRPGY N              
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSNNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  -------CRIKTLKRAFQAISEMKGPTCSGFGWNDEQKCIIAEKDLFDSWVKSHPAAKGL 120
                   RIK +KR F A++EM+GP CSGFGWNDE+KCI+AEK++FD W  SHPAAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKPFPHYDDLCYVFGRDRATGGRSETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGL 180
           LNK F HYD+L YVFG+DRATGG +E+F D+GSN PPG++  A     D + P M S GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGLAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 180

Query: 181 DMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIADWPKE 240
           +MSPDD+M  R+ R+SE R  SSGSKRK  G A ++ +I+R+A+EY N+QL  IA+WP  
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

Query: 241 QRQDASVTRAEIVRQLQGMSELSRLDRARCMRILMRSVDDMKAFLDVPDELNVKY 275
           QRQDA+ TR EIVR L+ + EL+ +DR R MRILMR+VDDMKAFL+VPD +   Y
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPY 293

[Close]

BLAST of PI0017267 vs. NCBI nr
Match: KAA0035621.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046728.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0052099.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0054495.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 351.3 bits (900), Expect = 7.6e-93
Identity = 173/295 (58.64%), Postives = 215/295 (72.88%), Query Frame = 0


Query: 1   MATSSRAPKHHWTKEEDSALVECLVELVSSDGWKSDNGTFRPGYHN-------------- 60
           M +SSR PKH WTKEE++ LVECLVELV++ GW+SDNGTFRPGY N              
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  -------CRIKTLKRAFQAISEMKGPTCSGFGWNDEQKCIIAEKDLFDSWVKSHPAAKGL 120
                   RIK +KR F A++EM+GP CSGFGWNDE+KCI+AEK++FD W  SHPAAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKPFPHYDDLCYVFGRDRATGGRSETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGL 180
           LNK F HYD+L YVFG+DRATGGR+E+F D+GSN PPG++  A     D + P M S GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAVAADAMPDTDFPPMYSPGL 180

Query: 181 DMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIADWPKE 240
           +MSPDD+M  R+ R+SE R  SSGSKRK  G A ++ +I+R+A+EY N+QL  IA+WP  
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

Query: 241 QRQDASVTRAEIVRQLQGMSELSRLDRARCMRILMRSVDDMKAFLDVPDELNVKY 275
           QRQDA+ TR EIVR L+ + EL+ +DR R MRILMR+VDDMKAFL+VPD +   Y
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPY 293

[Close]

BLAST of PI0017267 vs. NCBI nr
Match: KAA0038122.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0047362.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0055248.1 retrotransposon protein [Cucumis melo var. makuwa] >TYJ97185.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK00369.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 350.5 bits (898), Expect = 1.3e-92
Identity = 173/295 (58.64%), Postives = 215/295 (72.88%), Query Frame = 0


Query: 1   MATSSRAPKHHWTKEEDSALVECLVELVSSDGWKSDNGTFRPGYHN-------------- 60
           M +SSR PKH WTKEE++ LVECLVELV++ GW+SDNGTFRPGY N              
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  -------CRIKTLKRAFQAISEMKGPTCSGFGWNDEQKCIIAEKDLFDSWVKSHPAAKGL 120
                   RIK +KR F A++EM+GP CSGFGWNDE+KCI+AEK++FD W  SHPAAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKPFPHYDDLCYVFGRDRATGGRSETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGL 180
           LNK F HYD+L YVFG+DRATGGR+E+F D+GSN PPG++  A     D + P M S GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 180

Query: 181 DMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIADWPKE 240
           +MSPDD+M  R+ R+SE R  SSGSKRK  G A ++ +I+R+A+EY N+QL  IA+WP  
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

Query: 241 QRQDASVTRAEIVRQLQGMSELSRLDRARCMRILMRSVDDMKAFLDVPDELNVKY 275
           QRQDA+ TR EIVR L+ + EL+ +DR R MRILMR+VDDMKAFL+VPD +   Y
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPY 293

[Close]

BLAST of PI0017267 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 350.5 bits (898), Expect = 1.3e-92
Identity = 173/295 (58.64%), Postives = 215/295 (72.88%), Query Frame = 0


Query: 1   MATSSRAPKHHWTKEEDSALVECLVELVSSDGWKSDNGTFRPGYHN-------------- 60
           M +SSR PKH WTKEE++ LVECLVELV++ GW+SDNGTFRPGY N              
Sbjct: 356 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 415

Query: 61  -------CRIKTLKRAFQAISEMKGPTCSGFGWNDEQKCIIAEKDLFDSWVKSHPAAKGL 120
                   RIK +KR F A++EM+GP CSGFGWNDE+KCI+AEK++FD W  SHPAAKGL
Sbjct: 416 IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 475

Query: 121 LNKPFPHYDDLCYVFGRDRATGGRSETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGL 180
           LNK F HYD+L YVFG+DRATGGR+E+F D+GSN PPG++  A     D + P M S GL
Sbjct: 476 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 535

Query: 181 DMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIADWPKE 240
           +MSPDD+M  R+ R+SE R  SSGSKRK  G A ++ +I+R+A+EY N+QL  IA+WP  
Sbjct: 536 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 595

Query: 241 QRQDASVTRAEIVRQLQGMSELSRLDRARCMRILMRSVDDMKAFLDVPDELNVKY 275
           QRQDA+ TR EIVR L+ + EL+ +DR R MRILMR+VDDMKAFL+VPD +   Y
Sbjct: 596 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPY 648

[Close]

BLAST of PI0017267 vs. NCBI nr
Match: KAA0057083.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK09001.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 350.5 bits (898), Expect = 1.3e-92
Identity = 173/295 (58.64%), Postives = 215/295 (72.88%), Query Frame = 0


Query: 1   MATSSRAPKHHWTKEEDSALVECLVELVSSDGWKSDNGTFRPGYHN-------------- 60
           M +SSR PKH WTKEE++ LVECLVELV++ GW+SDNGTFRPGY N              
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  -------CRIKTLKRAFQAISEMKGPTCSGFGWNDEQKCIIAEKDLFDSWVKSHPAAKGL 120
                   RIK +KR F A++EM+GP CSGFGWNDE+KCI+AEK++FD W  SHPAAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKPFPHYDDLCYVFGRDRATGGRSETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGL 180
           LNK F HYD+L YVFG+DRATGGR+E+F D+GSN PPG++  A     D + P M S GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAEAADAMPDTDFPPMYSPGL 180

Query: 181 DMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIADWPKE 240
           +MSPDD+M  R+ R+SE R  SSGSKRK  G A ++ +I+R+A+EY N+QL  IA+WP  
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

Query: 241 QRQDASVTRAEIVRQLQGMSELSRLDRARCMRILMRSVDDMKAFLDVPDELNVKY 275
           QRQDA+ TR EIVR L+ + EL+ +DR R MRILMR+VDDMKAFL+VPD +   Y
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPY 293

[Close]

BLAST of PI0017267 vs. NCBI nr
Match: KAA0051058.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 345.9 bits (886), Expect = 3.2e-91
Identity = 171/295 (57.97%), Postives = 214/295 (72.54%), Query Frame = 0


Query: 1   MATSSRAPKHHWTKEEDSALVECLVELVSSDGWKSDNGTFRPGYHN-------------- 60
           M +SSR PKH WTKEE++ LVECLVELV++ GW+S+NGTFRPGY N              
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSNNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  -------CRIKTLKRAFQAISEMKGPTCSGFGWNDEQKCIIAEKDLFDSWVKSHPAAKGL 120
                   RIK +KR F A++EM+GP CSGFGWNDE+KCI+AEK++FD W  SHPAAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKPFPHYDDLCYVFGRDRATGGRSETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGL 180
           LNK F HYD+L YVFG+DRATGG +E+F D+GSN PPG++  A     D + P M S GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGLAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 180

Query: 181 DMSPDDIMTPRSVRMSEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIADWPKE 240
           +MSPDD+M  R+ R+SE R  SSGSKRK  G A ++ +I+R+A+EY N+QL  IA+WP  
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

Query: 241 QRQDASVTRAEIVRQLQGMSELSRLDRARCMRILMRSVDDMKAFLDVPDELNVKY 275
           QRQDA+ TR EIVR L+ + EL+ +DR R MRILMR+VDDMKAFL+VPD +   Y
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPY 293

[Close]

BLAST of PI0017267 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 3.9e-10
Identity = 34/128 (26.56%), Postives = 62/128 (48.44%), Query Frame = 0


Query: 12  WTKEEDSALVECLVELVS----------SDGWKSDNGTFRPGY---HN-----CRIKTLK 71
           WT   D  L++ LVE V+          +  W      F   +   HN      R K L+
Sbjct: 327 WTPPMDYHLIDLLVEQVNNGNRVGQTFITSAWNEMVTAFNAKFGSQHNKDVLKNRYKHLR 386

Query: 72  RAFQAISEMKGPTCSGFGWNDEQKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYV 122
           R +  I  +     +GF W+  +  +IA+ D++++++++HP A+    K  P Y +LC++
Sbjct: 387 RLYNDIKFLLEQ--NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPNLCFI 446

[Close]

BLAST of PI0017267 vs. TAIR 10
Match: AT1G30140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 3.3e-09
Identity = 36/137 (26.28%), Postives = 61/137 (44.53%), Query Frame = 0


Query: 6   RAPKHHWTKEEDSALVECLVELVSSDGWKSDNGTF---------------RPGYHN---- 65
           + P + WT +E   L+E +        W+  +G                 R G +     
Sbjct: 11  KGPYNQWTPDETDVLIELI-----RQNWRDSSGIIGKLTVESKLLPALNKRLGCNKNHKN 70

Query: 66  --CRIKTLKRAFQAISEMKGPTCSGFGWNDEQKCIIAEKDLFDSWVKSHPAAKGLLNKPF 122
              R+K LK  +Q+  ++K    SGFGW+ E K   A  +++  ++K+HP  K +  +  
Sbjct: 71  YMSRLKFLKNLYQSYLDLK-RFSSGFGWDPETKKFTAPDEVWRDYLKAHPNHKHMQTESI 130

[Close]

BLAST of PI0017267 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 9.5e-09
Identity = 22/68 (32.35%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 48  RIKTLKRAFQAISEMKGPTCSGFGWNDEQKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHY 107
           R K+L+R F AI  +      GF W++E++ + A+ +++  ++K+H  A+  + +P P+Y
Sbjct: 240 RYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYY 299

Query: 108 DDLCYVFG 116
            DLC + G
Sbjct: 300 KDLCVLCG 305

[Close]

BLAST of PI0017267 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 58.5 bits (140), Expect = 9.5e-09
Identity = 22/68 (32.35%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 48  RIKTLKRAFQAISEMKGPTCSGFGWNDEQKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHY 107
           R K+L+R F AI  +      GF W++E++ + A+ +++  ++K+H  A+  + +P P+Y
Sbjct: 240 RYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYY 299

Query: 108 DDLCYVFG 116
            DLC + G
Sbjct: 300 KDLCVLCG 305

[Close]

BLAST of PI0017267 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 2.9e-05
Identity = 19/62 (30.65%), Postives = 34/62 (54.84%), Query Frame = 0


Query: 69  GFGWNDEQKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATGGRSETFG 128
           GF W+   + +I +  L+  ++K+HP A+    KP  ++ DLC ++G   A G  S +  
Sbjct: 88  GFVWDQTHQTVIGDDSLWSLYLKAHPEARVYKTKPVLNFSDLCLIYGYTVADGRYSMSSH 147

Query: 129 DV 131
           D+
Sbjct: 148 DL 149

The following BLAST results are available for this feature:

BLAST of PI0017267 vs.


Match Name	E-value	Identity	Description

BLAST of PI0017267 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DPR5	3.7e-93	58.64	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UME4	6.3e-93	58.64	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CBF7	6.3e-93	58.64	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E5GCB5	6.3e-93	58.64	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A5A7U6Z3	1.5e-91	57.97	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0017267 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035621.1	7.6e-93	58.64	retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon...	[more]
KAA0038122.1	1.3e-92	58.64	retrotransposon protein [Cucumis melo var. makuwa] >KAA0047362.1 retrotransposon...	[more]
ADN34114.1	1.3e-92	58.64	retrotransposon protein [Cucumis melo subsp. melo]	[more]
KAA0057083.1	1.3e-92	58.64	retrotransposon protein [Cucumis melo var. makuwa] >TYK09001.1 retrotransposon p...	[more]
KAA0051058.1	3.2e-91	57.97	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0017267 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24960.2	3.9e-10	26.56	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G30140.1	3.3e-09	26.28	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.1	9.5e-09	32.35	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	9.5e-09	32.35	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G24960.1	2.9e-05	30.65	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 3..46
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 48..269
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 48..269
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 3..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0017267.1	PI0017267.1	mRNA