PI0017162 (gene) Melon (PI 482460) v1

Overview
NamePI0017162
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr01: 22232937 .. 22233710 (+)
RNA-Seq ExpressionPI0017162
SyntenyPI0017162
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTTTAATTCCGGGAACCCCAGCTTTATCAAGACCTGGCGTCTTGGGGGTGGGCGCAGTAGCAGTTTCATTAACACCGGCAACCACCGTAGGGGAAGGTGCAGTAGACGCGCCACCATGAGGGAGTTGAGCTGGAGAAGGAGCACCAACACTCCCATCAAAAACCAACACACCTCTTGAATTCAAATTATCTGTTTTAAACTCATGCGCCGCAGGAACACCCGTAGTCGAATCCACCGACGGTCCAACTTGCCAAACTTGGTTCAACGACGAAGCCTTCTCCGGAACTTTCACGGTAACGAAGATCACAAACAAATCGTCGGAAGATTCGGATGCCACGTCCCAGAAGGGAAAGGAGAGCTTGGTGGAAGGATGAACAGAGTTATAAGAAGTAATGTTGTAAGTACGGACAGTGAGGGATTTGCCGAAGAAAGCGGCGAGGAAGGCTTGGGATCCGGCCATGCCGGTGGCGGTGGGGTTGACGGCCCAGGCGACCCAGCCGGCGGTGGTAGGGGGAGCGGCGAGGAAGGCGATGGAGAGAGTGGAATTTTGGGGATTGTAAGACCAGTGGAGGTAGGCGTCGAGATAGGGGAGATCTTGGCAATTGGTGAAGGTTCTGTTGGGAAGGATTGGGAAGAGCAAGTGAGGGAATGGGAGAGGGAAAGGGAAGAGGAAAGTAGAGTTAGAAAGAGGAAGAAATTGGAGAAGGAAGCCATTGGAGAGAGGGAATTGAGTTTTGAGAATGGAAGAGAAAGGGGAATTGAGTTTTGA

mRNA sequence

ATGGCGTTTAATTCCGGGAACCCCAGCTTTATCAAGACCTGGCGTCTTGGGGGTGGGCGCAGTAGCAGTTTCATTAACACCGGCAACCACCGTAGGGGAAGGAACACCCGTAGTCGAATCCACCGACGGTCCAACTTGCCAAACTTGGTTCAACGACGAAGCCTTCTCCGGAACTTTCACGGTAACGAAGATCACAAACAAATCGTCGGAAGATTCGGATGCCACGTCCCAGAAGGGAAAGGAGAGCTTGGTGGAAGGATGAACAGAGTTATAAGAAGTAATGTTGTAAGTACGGACAGTGAGGGATTTGCCGAAGAAAGCGGCGAGGAAGGCTTGGGATCCGGCCATGCCGGTGGCGGTGGGGTTGACGGCCCAGGCGACCCAGCCGGCGGTGGTAGGGGGAGCGGCGAGGAAGGCGATGGAGAGAGTGGAATTTTGGGGATTGTAAGACCAGTGGAGGTAGGCGTCGAGATAGGGGAGATCTTGGCAATTGGTGAAGGTTCTGTTGGGAAGGATTGGGAAGAGCAAGTGAGGGAATGGGAGAGGGAAAGGGAAGAGGAAAGTAGAGTTAGAAAGAGGAAGAAATTGGAGAAGGAAGCCATTGGAGAGAGGGAATTGAGTTTTGAGAATGGAAGAGAAAGGGGAATTGAGTTTTGA

Coding sequence (CDS)

ATGGCGTTTAATTCCGGGAACCCCAGCTTTATCAAGACCTGGCGTCTTGGGGGTGGGCGCAGTAGCAGTTTCATTAACACCGGCAACCACCGTAGGGGAAGGAACACCCGTAGTCGAATCCACCGACGGTCCAACTTGCCAAACTTGGTTCAACGACGAAGCCTTCTCCGGAACTTTCACGGTAACGAAGATCACAAACAAATCGTCGGAAGATTCGGATGCCACGTCCCAGAAGGGAAAGGAGAGCTTGGTGGAAGGATGAACAGAGTTATAAGAAGTAATGTTGTAAGTACGGACAGTGAGGGATTTGCCGAAGAAAGCGGCGAGGAAGGCTTGGGATCCGGCCATGCCGGTGGCGGTGGGGTTGACGGCCCAGGCGACCCAGCCGGCGGTGGTAGGGGGAGCGGCGAGGAAGGCGATGGAGAGAGTGGAATTTTGGGGATTGTAAGACCAGTGGAGGTAGGCGTCGAGATAGGGGAGATCTTGGCAATTGGTGAAGGTTCTGTTGGGAAGGATTGGGAAGAGCAAGTGAGGGAATGGGAGAGGGAAAGGGAAGAGGAAAGTAGAGTTAGAAAGAGGAAGAAATTGGAGAAGGAAGCCATTGGAGAGAGGGAATTGAGTTTTGAGAATGGAAGAGAAAGGGGAATTGAGTTTTGA

Protein sequence

MAFNSGNPSFIKTWRLGGGRSSSFINTGNHRRGRNTRSRIHRRSNLPNLVQRRSLLRNFHGNEDHKQIVGRFGCHVPEGKGELGGRMNRVIRSNVVSTDSEGFAEESGEEGLGSGHAGGGGVDGPGDPAGGGRGSGEEGDGESGILGIVRPVEVGVEIGEILAIGEGSVGKDWEEQVREWEREREEESRVRKRKKLEKEAIGERELSFENGRERGIEF
Homology
BLAST of PI0017162 vs. ExPASy TrEMBL
Match: A0A0A0K6W3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G368160 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 8.9e-50
Identity = 115/140 (82.14%), Postives = 117/140 (83.57%), Query Frame = 0

Query: 35  NTRSRIHRRSNLPNLVQRRSLLRNFHGNEDHKQIVGRFGCHVPEGKGELGGRMNRVIRSN 94
           NT + IHRR NLPNLVQRR LLR+FHGNED KQIVGR GC VPEGKGE GGR N VIRSN
Sbjct: 5   NTHTGIHRRPNLPNLVQRRRLLRHFHGNEDRKQIVGRLGCKVPEGKGERGGRTNGVIRSN 64

Query: 95  VVSTDSEGFAEESGEEGLGSGHAGGGGVDGPGDPAGGGRGSGEEGDGESGILGIVRPVEV 154
           V STDSEGF EESGEEGLGS HAGGGGVDGPGDP GG  G GEEGDGE GI GIVRPVE 
Sbjct: 65  VESTDSEGFGEESGEEGLGSSHAGGGGVDGPGDPTGGCGGRGEEGDGERGIFGIVRPVEE 124

Query: 155 GVEIGEILAIGEGSVGKDWE 175
           GVEIGEILAIGEGSV   WE
Sbjct: 125 GVEIGEILAIGEGSV---WE 141

BLAST of PI0017162 vs. ExPASy TrEMBL
Match: A0A6A4M044 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_04389 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-07
Identity = 54/126 (42.86%), Postives = 68/126 (53.97%), Query Frame = 0

Query: 42  RRSNLPNLVQRRSLLRNFHGNEDHKQIVGRFGCHVPEGKGELGGRMNRVIRSNVVSTDSE 101
           R +NLPNLV R  + R     ED    V  F   V +   +LG   NR + ++VV  D  
Sbjct: 9   RPANLPNLVHRLRVRRQSQRGEDPHHAVRMFRAGVRDVVRDLGFD-NRAVGADVVGVDDH 68

Query: 102 GFAEE--SGEEGLGSGHAGGGGVDGPGDPAGGGRGSGEEGDGESGILGIVRPVEVGVEIG 161
           G       GEEGLG+ HA  G VDGPG+P  G  G  + GDGE G  G V PVE GVE+ 
Sbjct: 69  GTVVRLLEGEEGLGARHARAGWVDGPGNPTVGFGGRCDVGDGEGGGGGSVGPVEEGVEVR 128

Query: 162 EILAIG 166
           ++ A+G
Sbjct: 129 QVCAVG 133

BLAST of PI0017162 vs. NCBI nr
Match: KAE9463710.1 (hypothetical protein C3L33_04389, partial [Rhododendron williamsianum])

HSP 1 Score: 66.6 bits (161), Expect = 3.0e-07
Identity = 54/126 (42.86%), Postives = 68/126 (53.97%), Query Frame = 0

Query: 42  RRSNLPNLVQRRSLLRNFHGNEDHKQIVGRFGCHVPEGKGELGGRMNRVIRSNVVSTDSE 101
           R +NLPNLV R  + R     ED    V  F   V +   +LG   NR + ++VV  D  
Sbjct: 9   RPANLPNLVHRLRVRRQSQRGEDPHHAVRMFRAGVRDVVRDLGFD-NRAVGADVVGVDDH 68

Query: 102 GFAEE--SGEEGLGSGHAGGGGVDGPGDPAGGGRGSGEEGDGESGILGIVRPVEVGVEIG 161
           G       GEEGLG+ HA  G VDGPG+P  G  G  + GDGE G  G V PVE GVE+ 
Sbjct: 69  GTVVRLLEGEEGLGARHARAGWVDGPGNPTVGFGGRCDVGDGEGGGGGSVGPVEEGVEVR 128

Query: 162 EILAIG 166
           ++ A+G
Sbjct: 129 QVCAVG 133

BLAST of PI0017162 vs. NCBI nr
Match: KAF7154714.1 (hypothetical protein RHSIM_Rhsim01G0249300 [Rhododendron simsii])

HSP 1 Score: 62.0 bits (149), Expect = 7.3e-06
Identity = 65/183 (35.52%), Postives = 88/183 (48.09%), Query Frame = 0

Query: 42  RRSNLPNLVQRRSLLRNFHGNEDHKQIVGRFGCHVPEGKGELGGRMNRVIRSNVVSTDSE 101
           R +NLPNLV R  + R     +D    V  F   V +   +LG  + R + ++VV  D  
Sbjct: 9   RSANLPNLVHRLRVRRQCQRGKDRHYAVRMFRAGVRDVVRDLGFDV-RAVGADVVGVDDH 68

Query: 102 GFAEE--SGEEGLGSGHAGGGGVDGPGDPAGGGRGSGEEGDGESGILGIVRPVEVGVEIG 161
           G       GEEGLG+ HA  G VDGPG+P  G  G G  GDGE G  G V PVE GVE+ 
Sbjct: 69  GTVVRLLEGEEGLGARHARAGWVDGPGNPTVGFGGRGNVGDGEGGGGGSVGPVEDGVEVR 128

Query: 162 EILAIG------EGSVG--------------------KDWEEQVRE-WEREREEESRVRK 196
           ++ A+G      E ++                      DW+  V+E W R +  +SRVR+
Sbjct: 129 QVCAVGVLLVVFEDTMAVPLLTKKIVKKRVKKFKRPQSDWKISVKENWRRPKGIDSRVRR 188

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K6W38.9e-5082.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G368160 PE=4 SV=1[more]
A0A6A4M0441.4e-0742.86Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3... [more]
Match NameE-valueIdentityDescription
KAE9463710.13.0e-0742.86hypothetical protein C3L33_04389, partial [Rhododendron williamsianum][more]
KAF7154714.17.3e-0635.52hypothetical protein RHSIM_Rhsim01G0249300 [Rhododendron simsii][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 170..197
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..146

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0017162.1PI0017162.1mRNA