PI0017026 (gene) Melon (PI 482460) v1

Overview


Name	PI0017026
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr06: 14889083 .. 14890364 (-)
RNA-Seq Expression	PI0017026
Synteny	PI0017026

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACAATTGATGGAGAAGATGAATCTGATGGTGAATAAGATGGAAAAAATTGAAGGACATGTAGAGGACCAAGTTAACGCCCAATTGTTTATGGTATGTAATTACATCATAATTACATGTTCTATTTATGGCTCCATATATGTGTGTCAACTGTTTATGATATGTAGTATAATTACATCATAATTACATGTTTTGTTTATGGTTGCATGTATGTGAGTTTGTGACTGACTGCATAAATAGAAGAACTACATATATTTGATGTTGTAACTGGCTACATAATTATAGATTAATTGTTTTTATTGAGTATTTATATATATTTATATGTAATCTAAACAGGCGGCTACTGAATTTCAAAAGAGACTTGATAGTATAGAAGAAGAAGAAGACGAGAATGAAGAAAACTCATATGCTTGTGGGGTGGGCAAATTTCAATCCAAAAGAAATGATGAGCATGAAAGGGATGAAGAGGATGGAAATAAACAACACCAGACAACAGCTCCTAGTCTGGTCAACAAGCAAACAATACAACCTAGTGAAGAAAAAGAATAAAAAACAGAAGGAGATAGAAACAGAAGCCACAAGGTAATAAAATACAACATGAACTTTTTTAAATAAATCATTCATGTCCATATGCTAAATTTATGTCATGAAATAGAATGTCAAAGATCTAGATGATATAATTGGCAATGTCATAAACTCAATTAATGAGGAGGAGATATATGAAAGTTTGTCGAGACAAACAACATCCAACACTATCGAGAAGGTATGAAAATTATCTTGATTATAAAATGTATTGTTGAAGTAGTTAATGAATATATACATAATAACATGTTTTAATTTTTTGACTAGTAGGATTCAATCATTGGACAAGAAAAATATGAAGCCGATGGACTTCACCAATTGAGGGGCAAAGAACCGAACAAATCTAAGAAAAAGGTCAAACGAAAATTGGATATGATTGACACCAACTTGAAGTCAACGCAAATTATCGTACGACATGTAAGTCTGAATAATTTAAATCATAATTATAAGTTTTTTATGCACTTGACATAATTTAAAACTTGTATTAAGAAAATTTGTTATTGCATTTTAATAGTTAGGTACAAGTATGGAAGAATTAGAGAATATAAGAGAACAAAAGGATCAATTTAAAGCTACAAAATTAGAACAATTACGGAAAGAACCTAGCACATCAACAGCAGGTATATGGATCGATGCGTTGAAGGGGAAGTTGCCAGAAGAATTGAGAAAATGTGAACATGAATGCACCATCGTTTGA

mRNA sequence

ATGGAACAATTGATGGAGAAGATGAATCTGATGGTGAATAAGATGGAAAAAATTGAAGGACATGTAGAGGACCAAGTTAACGCCCAATTGTTTATGGCGGCTACTGAATTTCAAAAGAGACTTGATAGTATAGAAGAAGAAGAAGACGAGAATGAAGAAAACTCATATGCTTGTGGGGTGGGCAAATTTCAATCCAAAAGAAATGATGAGCATGAAAGGGATGAAGAGGATGGAAATAAACAACACCAGACAACAGCTCCTAGTCTGAATGTCAAAGATCTAGATGATATAATTGGCAATGTCATAAACTCAATTAATGAGGAGGAGATATATGAAAGTTTGTCGAGACAAACAACATCCAACACTATCGAGAAGGATTCAATCATTGGACAAGAAAAATATGAAGCCGATGGACTTCACCAATTGAGGGGCAAAGAACCGAACAAATCTAAGAAAAAGGTCAAACGAAAATTGGATATGATTGACACCAACTTGAAGTCAACGCAAATTATCGTACGACATTTAGGTACAAGTATGGAAGAATTAGAGAATATAAGAGAACAAAAGGATCAATTTAAAGCTACAAAATTAGAACAATTACGGAAAGAACCTAGCACATCAACAGCAGGTATATGGATCGATGCGTTGAAGGGGAAGTTGCCAGAAGAATTGAGAAAATGTGAACATGAATGCACCATCGTTTGA

Coding sequence (CDS)

ATGGAACAATTGATGGAGAAGATGAATCTGATGGTGAATAAGATGGAAAAAATTGAAGGACATGTAGAGGACCAAGTTAACGCCCAATTGTTTATGGCGGCTACTGAATTTCAAAAGAGACTTGATAGTATAGAAGAAGAAGAAGACGAGAATGAAGAAAACTCATATGCTTGTGGGGTGGGCAAATTTCAATCCAAAAGAAATGATGAGCATGAAAGGGATGAAGAGGATGGAAATAAACAACACCAGACAACAGCTCCTAGTCTGAATGTCAAAGATCTAGATGATATAATTGGCAATGTCATAAACTCAATTAATGAGGAGGAGATATATGAAAGTTTGTCGAGACAAACAACATCCAACACTATCGAGAAGGATTCAATCATTGGACAAGAAAAATATGAAGCCGATGGACTTCACCAATTGAGGGGCAAAGAACCGAACAAATCTAAGAAAAAGGTCAAACGAAAATTGGATATGATTGACACCAACTTGAAGTCAACGCAAATTATCGTACGACATTTAGGTACAAGTATGGAAGAATTAGAGAATATAAGAGAACAAAAGGATCAATTTAAAGCTACAAAATTAGAACAATTACGGAAAGAACCTAGCACATCAACAGCAGGTATATGGATCGATGCGTTGAAGGGGAAGTTGCCAGAAGAATTGAGAAAATGTGAACATGAATGCACCATCGTTTGA

Protein sequence

MEQLMEKMNLMVNKMEKIEGHVEDQVNAQLFMAATEFQKRLDSIEEEEDENEENSYACGVGKFQSKRNDEHERDEEDGNKQHQTTAPSLNVKDLDDIIGNVINSINEEEIYESLSRQTTSNTIEKDSIIGQEKYEADGLHQLRGKEPNKSKKKVKRKLDMIDTNLKSTQIIVRHLGTSMEELENIREQKDQFKATKLEQLRKEPSTSTAGIWIDALKGKLPEELRKCEHECTIV

Homology

[Close]

BLAST of PI0017026 vs. NCBI nr
Match: KAE8650661.1 (hypothetical protein Csa_011654 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 5.1e-29
Identity = 89/153 (58.17%), Postives = 106/153 (69.28%), Query Frame = 0


Query: 1   MEQLMEKMNLMVNKMEKIEGHVEDQVNAQLFMAATEFQKRLDSIEEEEDE----NEENSY 60
           ME LMEKMNLMVNKMEKIE +V++QVN Q FMAATEFQ+RLDSI+EEE+E    N + + 
Sbjct: 11  MELLMEKMNLMVNKMEKIEWNVKEQVNDQQFMAATEFQRRLDSIKEEEEEVNVKNLDANT 70

Query: 61  ACGVGKFQSKRNDEHERDEEDGNKQHQTTAPSL-------------------------NV 120
           + GV KFQ K+ DE+E DE D NKQHQTT+P+L                          V
Sbjct: 71  SSGVDKFQPKKYDENEGDEGDENKQHQTTSPNLVNQQIEQPNEDKESKREGGRNTSHKIV 130

Query: 121 KDLDDIIGNVINSINEEEIYESLSRQTTSNTIE 125
           +D DDII +VINSIN+EEIYESLS+Q TSNTIE
Sbjct: 131 EDPDDIIDDVINSINKEEIYESLSKQATSNTIE 163

[Close]

BLAST of PI0017026 vs. NCBI nr
Match: KAE8646261.1 (hypothetical protein Csa_015606, partial [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 4.9e-08
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 33 AATEFQKRLDSIEEEEDENEEN---SYACGVGKFQSKRNDEHERDEEDGNKQHQTTAPSL 90
          AATEFQ RLDSIE+EED NE+N   + +CGV KFQ K+ DE+E DE D NKQH TT P+L
Sbjct: 1  AATEFQMRLDSIEKEEDVNEKNLDANTSCGVDKFQPKKYDENEGDEGDENKQHHTTTPNL 60

[Close]

BLAST of PI0017026 vs. NCBI nr
Match: XP_038889592.1 (uncharacterized protein LOC120079469 [Benincasa hispida])

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-06
Identity = 35/86 (40.70%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 1  MEQLMEKMNLMVNKMEKIEGHVEDQVNAQLFMAATEFQKRLDSIEEEEDENEEN---SYA 60
          M +LM+KMNL++ + +++E H   Q   ++FM A EF K LD++E+++ +N++N   + A
Sbjct: 11 MIELMDKMNLILEQTKRMEEHAYTQNTGEVFMVAFEFTKTLDTMEDDKGDNQDNPNLNMA 70

Query: 61 CGVGKFQSKRNDEHERDEEDGNKQHQ 84
          CGV K +SKR+DEHE     GN++ +
Sbjct: 71 CGVEKLKSKRDDEHEGGGRTGNRERK 96

The following BLAST results are available for this feature:

BLAST of PI0017026 vs.


Match Name	E-value	Identity	Description

BLAST of PI0017026 vs.


Match Name	E-value	Identity	Description

BLAST of PI0017026 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650661.1	5.1e-29	58.17	hypothetical protein Csa_011654 [Cucumis sativus]	[more]
KAE8646261.1	4.9e-08	65.00	hypothetical protein Csa_015606, partial [Cucumis sativus]	[more]
XP_038889592.1	2.1e-06	40.70	uncharacterized protein LOC120079469 [Benincasa hispida]	[more]

BLAST of PI0017026 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..21
None	No IPR available	COILS	Coil	Coil	coord: 34..54
None	No IPR available	COILS	Coil	Coil	coord: 182..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0017026.1	PI0017026.1	mRNA