PI0016998 (gene) Melon (PI 482460) v1

Overview


Name	PI0016998
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	ATP-dependent helicase/nuclease subunit A isoform 1
Location	chr02: 22855833 .. 22856300 (+)
RNA-Seq Expression	PI0016998
Synteny	PI0016998

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGGCAGTTCTCGTAAATGGGCTTATATGCGGATCATCGCCGGCACCATCGTCGGCGGCGTTCTTGGCTTCTATGTAATGCACCGCGTTGAAGTTGGCTATAAGGTAACCCAACTTCTCTTCAATTTCTGCTTTCTAATCATCTCTACGCGAATCAATTTGTAGGTTATGTATTGTATGATTGTGGGTTTCTTTCTTTCTTTTTCTTTTTTTTTTTTTTTTTTTTATTTGCTTTTTGGGGCTGGTGCAGAAGAAGATGAAAGAGAGGTTAAAGCAATACGAGAACGAACTGAAAAAGAAAGAGCAAATGAAAGAACTTGAAGACTCGGTATAGTGTGAGTGTCGTACACTTTTTCTATTTGGGTGTTCTGATTATACAGAGCCAAAGTTGAAGTTCGAGGCTTTTCTGCATTGGCTTTAGAAATTGACCTCATAAGAACATTCCAATCATTCCATATCAATTAG

mRNA sequence

ATGGTCGGCAGTTCTCGTAAATGGGCTTATATGCGGATCATCGCCGGCACCATCGTCGGCGGCGTTCTTGGCTTCTATGTAATGCACCGCGTTGAAGTTGGCTATAAGAAGAAGATGAAAGAGAGAGCCAAAGTTGAAGTTCGAGGCTTTTCTGCATTGGCTTTAGAAATTGACCTCATAAGAACATTCCAATCATTCCATATCAATTAG

Coding sequence (CDS)

ATGGTCGGCAGTTCTCGTAAATGGGCTTATATGCGGATCATCGCCGGCACCATCGTCGGCGGCGTTCTTGGCTTCTATGTAATGCACCGCGTTGAAGTTGGCTATAAGAAGAAGATGAAAGAGAGAGCCAAAGTTGAAGTTCGAGGCTTTTCTGCATTGGCTTTAGAAATTGACCTCATAAGAACATTCCAATCATTCCATATCAATTAG

Protein sequence

MVGSSRKWAYMRIIAGTIVGGVLGFYVMHRVEVGYKKKMKERAKVEVRGFSALALEIDLIRTFQSFHIN

Homology

[Close]

BLAST of PI0016998 vs. ExPASy TrEMBL
Match: A0A0A0LPI8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G021950 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.0e-27
Identity = 64/69 (92.75%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MVGSSRKWAYMRIIAGTIVGGVLGFYVMHRVEVGYKKKMKERAKVEVRGFSALALEIDLI 60
          MVGSSRKWAY+RII GT+VGGVLGFYVMHRVEVGYK+KMKERAKVEVRGFSALALEIDLI
Sbjct: 1  MVGSSRKWAYIRIITGTVVGGVLGFYVMHRVEVGYKEKMKERAKVEVRGFSALALEIDLI 60

Query: 61 RTFQSFHIN 70
          RT QSFHIN
Sbjct: 61 RTLQSFHIN 69

[Close]

BLAST of PI0016998 vs. ExPASy TrEMBL
Match: A0A1S3BW37 (uncharacterized protein LOC103494113 OS=Cucumis melo OX=3656 GN=LOC103494113 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 1  MVGSSRKWAYMRIIAGTIVGGVLGFYVMHRVEVGYKKKMKERAK 45
          MVGSSRKWAY RIIAGTIVGGVLGFYVMHRVEVGYK+KMKER K
Sbjct: 31 MVGSSRKWAYTRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLK 74

[Close]

BLAST of PI0016998 vs. ExPASy TrEMBL
Match: A0A5A7USD3 (ATP-dependent helicase/nuclease subunit A isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00320 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 1  MVGSSRKWAYMRIIAGTIVGGVLGFYVMHRVEVGYKKKMKERAK 45
          MVGSSRKWAY RIIAGTIVGGVLGFYVMHRVEVGYK+KMKER K
Sbjct: 1  MVGSSRKWAYTRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLK 44

[Close]

BLAST of PI0016998 vs. ExPASy TrEMBL
Match: A0A6J1E2A1 (uncharacterized protein LOC111430128 OS=Cucurbita moschata OX=3662 GN=LOC111430128 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.7e-13
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 1  MVGSSRKWAYMRIIAGTIVGGVLGFYVMHRVEVGYKKKMKERAK 45
          M+GSSR WAYMRIIAGTIVGGVLGFYVMHRVEVGYK+KMKER +
Sbjct: 1  MMGSSRSWAYMRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLR 44

[Close]

BLAST of PI0016998 vs. ExPASy TrEMBL
Match: A0A6J1JJ44 (uncharacterized protein LOC111484905 OS=Cucurbita maxima OX=3661 GN=LOC111484905 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.2e-13
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 1  MVGSSRKWAYMRIIAGTIVGGVLGFYVMHRVEVGYKKKMKERAK 45
          M+GSSR WAYMRIIAGTIVGGVLGFYVMHRVEVGYK+KMKER +
Sbjct: 45 MMGSSRTWAYMRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLR 88

[Close]

BLAST of PI0016998 vs. NCBI nr
Match: XP_038882309.1 (uncharacterized protein LOC120073547 [Benincasa hispida])

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-13
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 0


Query: 1  MVGSSRKWAYMRIIAGTIVGGVLGFYVMHRVEVGYKKKMKERAK 45
          M+GSSRKWAYMRIIAGTIVGGVLGFYVMHRVE+GYK+KMKER K
Sbjct: 1  MIGSSRKWAYMRIIAGTIVGGVLGFYVMHRVELGYKEKMKERLK 44

[Close]

BLAST of PI0016998 vs. NCBI nr
Match: KAA0058058.1 (ATP-dependent helicase/nuclease subunit A isoform 1 [Cucumis melo var. makuwa] >TYK28404.1 ATP-dependent helicase/nuclease subunit A isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 2.6e-13
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 1  MVGSSRKWAYMRIIAGTIVGGVLGFYVMHRVEVGYKKKMKERAK 45
          MVGSSRKWAY RIIAGTIVGGVLGFYVMHRVEVGYK+KMKER K
Sbjct: 1  MVGSSRKWAYTRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLK 44

[Close]

BLAST of PI0016998 vs. NCBI nr
Match: XP_008453375.1 (PREDICTED: uncharacterized protein LOC103494113 [Cucumis melo] >XP_008453376.1 PREDICTED: uncharacterized protein LOC103494113 [Cucumis melo])

HSP 1 Score: 85.1 bits (209), Expect = 2.6e-13
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 1  MVGSSRKWAYMRIIAGTIVGGVLGFYVMHRVEVGYKKKMKERAK 45
          MVGSSRKWAY RIIAGTIVGGVLGFYVMHRVEVGYK+KMKER K
Sbjct: 31 MVGSSRKWAYTRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLK 74

[Close]

BLAST of PI0016998 vs. NCBI nr
Match: XP_004138234.1 (uncharacterized protein LOC101217575 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 5.7e-13
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 1  MVGSSRKWAYMRIIAGTIVGGVLGFYVMHRVEVGYKKKMKERAK 45
          MVGSSRKWAY+RII GT+VGGVLGFYVMHRVEVGYK+KMKER K
Sbjct: 1  MVGSSRKWAYIRIITGTVVGGVLGFYVMHRVEVGYKEKMKERLK 44

[Close]

BLAST of PI0016998 vs. NCBI nr
Match: KGN63809.2 (hypothetical protein Csa_013239 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 5.7e-13
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 1  MVGSSRKWAYMRIIAGTIVGGVLGFYVMHRVEVGYKKKMKERAK 45
          MVGSSRKWAY+RII GT+VGGVLGFYVMHRVEVGYK+KMKER K
Sbjct: 1  MVGSSRKWAYIRIITGTVVGGVLGFYVMHRVEVGYKEKMKERLK 44

[Close]

BLAST of PI0016998 vs. TAIR 10
Match: AT3G18510.1 (unknown protein; Has 15 Blast hits to 15 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 4.8e-10
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 1  MVGSSRKWAYMRIIAGTIVGGVLGFYVMHRVEVGYKKKMKE 42
          M  SS  W Y RIIAGT++GG LGFYVMHR+EV YK +M+E
Sbjct: 1  MALSSMTWGYARIIAGTLLGGALGFYVMHRIEVSYKMRMEE 41

The following BLAST results are available for this feature:

BLAST of PI0016998 vs.


Match Name	E-value	Identity	Description

BLAST of PI0016998 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPI8	2.0e-27	92.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G021950 PE=4 SV=1	[more]
A0A1S3BW37	1.2e-13	93.18	uncharacterized protein LOC103494113 OS=Cucumis melo OX=3656 GN=LOC103494113 PE=...	[more]
A0A5A7USD3	1.2e-13	93.18	ATP-dependent helicase/nuclease subunit A isoform 1 OS=Cucumis melo var. makuwa ...	[more]
A0A6J1E2A1	4.7e-13	88.64	uncharacterized protein LOC111430128 OS=Cucurbita moschata OX=3662 GN=LOC1114301...	[more]
A0A6J1JJ44	6.2e-13	88.64	uncharacterized protein LOC111484905 OS=Cucurbita maxima OX=3661 GN=LOC111484905...	[more]

BLAST of PI0016998 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882309.1	1.5e-13	90.91	uncharacterized protein LOC120073547 [Benincasa hispida]	[more]
KAA0058058.1	2.6e-13	93.18	ATP-dependent helicase/nuclease subunit A isoform 1 [Cucumis melo var. makuwa] >...	[more]
XP_008453375.1	2.6e-13	93.18	PREDICTED: uncharacterized protein LOC103494113 [Cucumis melo] >XP_008453376.1 P...	[more]
XP_004138234.1	5.7e-13	88.64	uncharacterized protein LOC101217575 [Cucumis sativus]	[more]
KGN63809.2	5.7e-13	88.64	hypothetical protein Csa_013239 [Cucumis sativus]	[more]

BLAST of PI0016998 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18510.1	4.8e-10	65.85	unknown protein; Has 15 Blast hits to 15 proteins in 9 species: Archae - 0; Bact...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0016998.1	PI0016998.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004386	helicase activity