PI0016921 (gene) Melon (PI 482460) v1

Overview


Name	PI0016921
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Zinc finger, CCHC-type
Location	chr06: 14367947 .. 14368574 (-)
RNA-Seq Expression	PI0016921
Synteny	PI0016921

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACTTGCCATTCTCTGCAATGACCCACCCACGGTTGCCACTGAGGTCGTTGAGGTACCCTCCATCATCCATCTGGTAGACCCACCCATGCGAACCTCTCCCATTCTCATTCTTTCAGAAGAGGACGCCAACCAAGAAATTAGGGTCTCACCGCCACCACCACCGCCTGCTTTGGATACAGGTGACCATGTTGATGACCCACACATTAAGGATAAAAAACCTATCCTTAATGAAGCTGGCGAGACAGCTTCTTCGGCGCATACCCCCAACGCCCAACCTACTACCGCACCAGGAGAAGATGAAGACTTATGATAAGATGTTGAACAACAAAACAGAATATGAAGTAGAAAATGAGGCTCAACAAGCTTACACCAATTCAAGTAAAGAGGAAAATGAAGCACATGCTGAACATTCGTGGAAGAACTTTCCAAATCAAACCAATCAAGAGACAATCATTATGCCTCAAGGCCCAATGACAAGAGCTAAAGCTAAAAGACTTCAAGATGGATTAAATGCTAAATTTTTAGCCTTTAATGACAAGTTGCAACAATTGAAATATCAAGAGTCATTTGGACACCCAAAAGTCATAATGAATCTAGAAATTCAGATTCATTCACATCTTTAA

mRNA sequence

ATGGAACTTGCCATTCTCTGCAATGACCCACCCACGGTTGCCACTGAGGTCGTTGAGGTGACCATGTTGATGACCCACACATTAAGGATAAAAAACCTATCCTTAATGAAGCTGGCGAGACAGCTTCTTCGGCGCATACCCCCAACGCCCAACCTACTACCGCACCAGGAGAAGATGAAGACTTATGATAAGATGTTGAACAACAAAACAGAATATGAAGTAGAAAATGAGGCTCAACAAGCTTACACCAATTCAAGTAAAGAGGAAAATGAAGCACATGCTGAACATTCGTGGAAGAACTTTCCAAATCAAACCAATCAAGAGACAATCATTATGCCTCAAGGCCCAATGACAAGAGCTAAAGCTAAAAGACTTCAAGATGGATTAAATGCTAAATTTTTAGCCTTTAATGACAAGTTGCAACAATTGAAATATCAAGAGTCATTTGGACACCCAAAAGTCATAATGAATCTAGAAATTCAGATTCATTCACATCTTTAA

Coding sequence (CDS)

ATGGAACTTGCCATTCTCTGCAATGACCCACCCACGGTTGCCACTGAGGTCGTTGAGGTGACCATGTTGATGACCCACACATTAAGGATAAAAAACCTATCCTTAATGAAGCTGGCGAGACAGCTTCTTCGGCGCATACCCCCAACGCCCAACCTACTACCGCACCAGGAGAAGATGAAGACTTATGATAAGATGTTGAACAACAAAACAGAATATGAAGTAGAAAATGAGGCTCAACAAGCTTACACCAATTCAAGTAAAGAGGAAAATGAAGCACATGCTGAACATTCGTGGAAGAACTTTCCAAATCAAACCAATCAAGAGACAATCATTATGCCTCAAGGCCCAATGACAAGAGCTAAAGCTAAAAGACTTCAAGATGGATTAAATGCTAAATTTTTAGCCTTTAATGACAAGTTGCAACAATTGAAATATCAAGAGTCATTTGGACACCCAAAAGTCATAATGAATCTAGAAATTCAGATTCATTCACATCTTTAA

Protein sequence

MELAILCNDPPTVATEVVEVTMLMTHTLRIKNLSLMKLARQLLRRIPPTPNLLPHQEKMKTYDKMLNNKTEYEVENEAQQAYTNSSKEENEAHAEHSWKNFPNQTNQETIIMPQGPMTRAKAKRLQDGLNAKFLAFNDKLQQLKYQESFGHPKVIMNLEIQIHSHL

Homology

[Close]

BLAST of PI0016921 vs. ExPASy TrEMBL
Match: A0A5D3CW05 (Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00430 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.9e-21
Identity = 64/108 (59.26%), Postives = 77/108 (71.30%), Query Frame = 0


Query: 63  DKMLNNKTEYEVENEAQQAYTNSSKEENEAHAEHSWKNFPNQTNQETIIMPQGPMTRAKA 122
           DKMLNN           +AYTNS+KEENE HAE+SW N   QTNQETIIM QG MT+A+A
Sbjct: 367 DKMLNN-----------EAYTNSNKEENETHAENSWGNIQIQTNQETIIMTQGSMTKARA 426

Query: 123 KRLQDGLN----AKFLAFNDKLQQLKYQESFGHPKVIMNLEIQIHSHL 167
           KR +D LN    A+F  FN   ++L+ QES GHP++IMNLEI+IHSHL
Sbjct: 427 KRFRDELNACLQARFSVFN---KELELQESLGHPRLIMNLEIKIHSHL 460

[Close]

BLAST of PI0016921 vs. ExPASy TrEMBL
Match: A0A5A7VCL9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00820 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.9e-21
Identity = 64/108 (59.26%), Postives = 77/108 (71.30%), Query Frame = 0


Query: 63  DKMLNNKTEYEVENEAQQAYTNSSKEENEAHAEHSWKNFPNQTNQETIIMPQGPMTRAKA 122
           DKMLNN           +AYTNS+KEENE HAE+SW N   QTNQETIIM QG MT+A+A
Sbjct: 403 DKMLNN-----------EAYTNSNKEENETHAENSWGNIQIQTNQETIIMTQGSMTKARA 462

Query: 123 KRLQDGLN----AKFLAFNDKLQQLKYQESFGHPKVIMNLEIQIHSHL 167
           KR +D LN    A+F  FN   ++L+ QES GHP++IMNLEI+IHSHL
Sbjct: 463 KRFRDELNACLQARFSVFN---KELELQESLGHPRLIMNLEIKIHSHL 496

[Close]

BLAST of PI0016921 vs. ExPASy TrEMBL
Match: A0A5D3D7R5 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00380 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-08
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 73  EVENEA---QQAYTNSSKEENEAHAEHSWKNFPNQTNQETIIMPQGPMTRAKAKRLQDGL 132
           E EN+     +A+TNS++EENE HA +SW+N  +QTNQE IIM QG MT+A+AKRLQD L
Sbjct: 429 EGENDTMLNSEAHTNSNEEENETHAGNSWENIQSQTNQEAIIMTQGSMTKARAKRLQDRL 488

[Close]

BLAST of PI0016921 vs. ExPASy TrEMBL
Match: A0A5D3B744 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001050 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-07
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 85  SSKEENEAHAEHSWKNFPNQTNQETIIMPQGPMTRAKAKRLQDGLN 131
           +S+EENE HA +SW+N  +QTNQE IIM QG MT+A+AKRLQDGLN
Sbjct: 786 NSEEENETHAGNSWENIQSQTNQEAIIMTQGSMTKARAKRLQDGLN 831

[Close]

BLAST of PI0016921 vs. ExPASy TrEMBL
Match: A0A5D3BSJ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00730 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.0e-05
Identity = 28/50 (56.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 79  QQAYTNSSKEENEAHAEHSWKNFPNQTNQETIIMPQGPMTRAKAKRLQDG 129
           ++A+ NS++E+NEAHA + ++NF  QTNQ  +I  QG MT+A+AKRLQDG
Sbjct: 119 REAHNNSNEEDNEAHAGNPYENFQRQTNQAAVIRVQGSMTKARAKRLQDG 168

[Close]

BLAST of PI0016921 vs. NCBI nr
Match: TYK15114.1 (Zinc finger, CCHC-type [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 8.0e-21
Identity = 64/108 (59.26%), Postives = 77/108 (71.30%), Query Frame = 0


Query: 63  DKMLNNKTEYEVENEAQQAYTNSSKEENEAHAEHSWKNFPNQTNQETIIMPQGPMTRAKA 122
           DKMLNN           +AYTNS+KEENE HAE+SW N   QTNQETIIM QG MT+A+A
Sbjct: 367 DKMLNN-----------EAYTNSNKEENETHAENSWGNIQIQTNQETIIMTQGSMTKARA 426

Query: 123 KRLQDGLN----AKFLAFNDKLQQLKYQESFGHPKVIMNLEIQIHSHL 167
           KR +D LN    A+F  FN   ++L+ QES GHP++IMNLEI+IHSHL
Sbjct: 427 KRFRDELNACLQARFSVFN---KELELQESLGHPRLIMNLEIKIHSHL 460

[Close]

BLAST of PI0016921 vs. NCBI nr
Match: KAA0065903.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 8.0e-21
Identity = 64/108 (59.26%), Postives = 77/108 (71.30%), Query Frame = 0


Query: 63  DKMLNNKTEYEVENEAQQAYTNSSKEENEAHAEHSWKNFPNQTNQETIIMPQGPMTRAKA 122
           DKMLNN           +AYTNS+KEENE HAE+SW N   QTNQETIIM QG MT+A+A
Sbjct: 403 DKMLNN-----------EAYTNSNKEENETHAENSWGNIQIQTNQETIIMTQGSMTKARA 462

Query: 123 KRLQDGLN----AKFLAFNDKLQQLKYQESFGHPKVIMNLEIQIHSHL 167
           KR +D LN    A+F  FN   ++L+ QES GHP++IMNLEI+IHSHL
Sbjct: 463 KRFRDELNACLQARFSVFN---KELELQESLGHPRLIMNLEIKIHSHL 496

[Close]

BLAST of PI0016921 vs. NCBI nr
Match: TYK19543.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 2.7e-08
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 73  EVENEA---QQAYTNSSKEENEAHAEHSWKNFPNQTNQETIIMPQGPMTRAKAKRLQDGL 132
           E EN+     +A+TNS++EENE HA +SW+N  +QTNQE IIM QG MT+A+AKRLQD L
Sbjct: 429 EGENDTMLNSEAHTNSNEEENETHAGNSWENIQSQTNQEAIIMTQGSMTKARAKRLQDRL 488

[Close]

BLAST of PI0016921 vs. NCBI nr
Match: KAA0036753.1 (hypothetical protein E6C27_scaffold20G00320 [Cucumis melo var. makuwa] >TYJ95820.1 hypothetical protein E5676_scaffold110G001050 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-07
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 85  SSKEENEAHAEHSWKNFPNQTNQETIIMPQGPMTRAKAKRLQDGLN 131
           +S+EENE HA +SW+N  +QTNQE IIM QG MT+A+AKRLQDGLN
Sbjct: 786 NSEEENETHAGNSWENIQSQTNQEAIIMTQGSMTKARAKRLQDGLN 831

[Close]

BLAST of PI0016921 vs. NCBI nr
Match: TYK01059.1 (hypothetical protein E5676_scaffold264G00730 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 6.2e-05
Identity = 28/50 (56.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 79  QQAYTNSSKEENEAHAEHSWKNFPNQTNQETIIMPQGPMTRAKAKRLQDG 129
           ++A+ NS++E+NEAHA + ++NF  QTNQ  +I  QG MT+A+AKRLQDG
Sbjct: 119 REAHNNSNEEDNEAHAGNPYENFQRQTNQAAVIRVQGSMTKARAKRLQDG 168

The following BLAST results are available for this feature:

BLAST of PI0016921 vs.


Match Name	E-value	Identity	Description

BLAST of PI0016921 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CW05	3.9e-21	59.26	Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A5A7VCL9	3.9e-21	59.26	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold53...	[more]
A0A5D3D7R5	1.3e-08	61.29	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3B744	1.4e-07	69.57	Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3BSJ1	3.0e-05	56.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0016921 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK15114.1	8.0e-21	59.26	Zinc finger, CCHC-type [Cucumis melo var. makuwa]	[more]
KAA0065903.1	8.0e-21	59.26	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK19543.1	2.7e-08	61.29	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0036753.1	3.0e-07	69.57	hypothetical protein E6C27_scaffold20G00320 [Cucumis melo var. makuwa] >TYJ95820...	[more]
TYK01059.1	6.2e-05	56.00	hypothetical protein E5676_scaffold264G00730 [Cucumis melo var. makuwa]	[more]

BLAST of PI0016921 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0016921.1	PI0016921.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding