PI0016878 (gene) Melon (PI 482460) v1

Overview
NamePI0016878
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
Descriptionserine/arginine-rich SC35-like splicing factor SCL33
Locationchr04: 6115087 .. 6119622 (+)
RNA-Seq ExpressionPI0016878
SyntenyPI0016878
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTGAAATAAGGAACATCCAACAATTTTGCTCTTCCAGATTTAACGAAGCGGCTCCGTTTGCTTTATCGGTTCTCCGATTCTCAGGTTTTTTTTTTTGCCTTATTCTTTACTTTCTCAATATCTCAATATTTTCTCTAATGGGGATTACATTTGGACGAGTTTTGATTCAAGAATTGCTGATGATATAATATAATTATGCATGAGAATTTTTCCTTTTTTTTTTCTCTTATTTTTTTATGCCGAATTCTGTTTGATATCTATTTTATCACGTTCGAAGATCGTTAGATGTGAATGGAACTGCAATTATGGTCAATTTTTTTCTATTTGTCGTTATTGTACTATGAGAATTTAATTTCTGTGAGAGAATACTCATAGCCATCGTGCTTGTTTCGCTGTGTATGGAAATAATTTGACTTGTTCGAAATCGATCTCTTTAGCTCTGAGGGAATATTGGAGCAGTTGATCGAAGGAAAAGCTTATATTGCTTTCGATAAAATTTCTTAGGCTGTTTTTGGTTGATTATATGTGTGTATTTTTTTTTTTTTTTAAATAGTTGATATCGTGTTTGTTTTCTAAATAAATAATAGTCTGTTACTGATACTTTCGATTAAGTAATGGCTTGAATCTGTGGTATGATGGTAGCTTGCTGATGGATGTGTTAGTGTCTGCAAATTTAGGCTTATCTGCATCTTAATATTCTGCACATCTGTTTGTTGTTAAACTCTTGATTTGTTTTAATTTTCTTTGTGTCGTTAAGGAAATTGAAAATGAGAGGTAGAAGTTACAGTTACAGTCCATCACCACCAAGGAGTTATGGCAGAAGATATCGTAGCCCCAGTCCAAGGGGTCGTGGAAGCCGTCGAAGGGACCTGCCAACAAGTCTTTTGGTTAGGAACTTGAGGCACGACTGCAGGTTTGTGATTCCATTTTATATTTCGTAGCTATTTCATTTGCCGGGTCTTTTATACATGAATTGTTTGATGGTTCTTCGTTTCTCTTCACATATATTACATGCACGCGATGGAAAATGCTAAGAAACGCTTTATTTTGTTGAGTACAAAGGGAAAAAGGAGATTGTGTTTGGTTTTGTTCCCTATTGAGTTGATAAACTTTTTCATTCATATGTACTTTGCAGGCCAGAGGACCTACGTGGATTATTTGGGCGGTTTGGTCCTCTTAAGGACATTTACTTGCCACGAGATTATTATTCTGGGTAGGGTACTTTGGAAGATTGTTGTATTGATTTTGTATGCATTTGGTGTGTATGCATGTATGGATGTTTTTCCTGGATGTTTAACTCATTTTAGTCCTTTAGTTTTGGACGTATCTGATTTACTTTTCATATTTGTAAATGTGTTTTTATTGATGGTTGGTCCTAGTGATTGCTTACTGGTGTGGAAATGGTCCTCTGTTTTCAATTATTTGGTTTTCCAATAACATACAATCTGTTTATGGAGTTTGGTTGTTTTTATTGAAAGTGTTGAAGACAACCAATGAAGTAGTAAGAGTATCTTGTGGAAGACAAGAAGCAAGTAATTTGTTTATTGTGTTGAAGACATTCAAGTAAGTTCTGATGACTTAATGTGTACATGAAGATTCGGTGGAAGTTGGGTTAGAGTACATTGAAAAGAAGTTCAAGTCTTGAAGAATTTCATCTCAATTTTTTCTTAGCCACTCAGAAGGTTAGCATGGTGATGTTAATATTCTCTTGTTAGAGCTCTCTGTCGATGTTTCTGTCACTCTGCAATTGATGGATTAATGATCAATGATGCCACTGGTTTAAGTGACATTTTCTGAAATTTTCTGAATCAGTGAACATCTTTTGTTAAAAATTGTATTATGAACAGTAAAATGATTGTGACTGCAGAGAACCGCGTGGTTTTGGATTTGTTCAGTTCGTTGATGCTGCTGATGCTGCTGATGCCAAGTATGAATTGGATGGCCAAGTTCTCCTAGGTCATGAACTAACTGTTGTGTTTGCTGAGGAGAACAGGAAGAGACCTGAAGAGATGAGAGCACGAGACTCATCAAGGTTGCTATCTCTTTCCTTAACTGTTTTTTAATAACCAATTTCTTTTGCCAAGCTAGGATGCGTAGTGATGAAAATAACTCTCGACTTTTAGAAATTCTCTAGAAGCATCCTCAAACTTCTCCTATATCTGTAAAGTTTCTTGAGAGACTGAGGTACAACCAGAGCATTGGTCGAGACAGTTTTCTTGTCTTTGAAATTTTGACCAAAGAGATGCATCATTGATGGCAAATCGTGGATGTTACTAGGGGTGCACTAGTGCTAAATATATTGGAAGGATAGAAAAAAACCTGCCTTCTTTGGAGTAAATACATGGAAGAGATGTTACTGCTCTTCACTCGTGGAACGATAGATGGGGATTAAGGATATGTCTGGATTTTCTTTTGTTTGCAATTGAGTGTTGAACTTACCGTGAAATACATACCAGATAAAAGGTAGGAATCTGTAGGAATCTTAAGTTTCCATTTCTTGGAAGAAAATTCCAGACCGAGGTTGATTCCATTAACAGAGAATCAAATTACTTGAGTAAATTGACTGTAGCCACCTACCATCGTTGTGTTTTCAGTTAAGGGAAAGGAAGTTGTATGTTTGATTCAAAATTGCCTCTGGCTTCGTACTCTATCCTTGGCCTGCTCTTTTTTGTTTCCTTTGTGAAACGTTTCTGGCTGTTAGCAGCAATTACTCAGTTGATGCATGCACCATCACAATCTTTTGAGAAATCCTTTATTAATTGTAAATATAAATACTCCTTATTATTGTTCATGTGTGAAATTGTTAACAGGGGTCGGTCCTACAGTTATAGCCACCGACATTCACCGTTGCGATATTCACGATCACCACACTATGATCGAAACTATTCACGTAGTCCAGAGTATTACTCCCCTGCACGGTCCAGACGATATTCAAGGTGAGTGGTTATAGTTTGTATTCTTCTCTCATTTATGATTATTTACTCAATTAAAGAAAGAGGGGGGCGGAGGGGTGGTGGGGTGGTTTGTTCTAACTTCTAATCTCTCATTTATGTGATATAGGTCGCCTAGGGGCCGGAGGTTCAGGGCGCAATCCTACTCAAGGTCACCATATGATTCAAGGGGCCGCAGTTACAGCCGAAGCAGGAGCCGTAGCTATAGCCGAAGTTATTCTAGGTGAGTAAAAATACTCTATTGAAGTTTTAAGAAGCTAGCTGATCTTTCTGAAGACCCAGAAACTATGATTTTAATTATGTTTGGAATTTGGATTTCGGAGGCTTGTATATGTTTTCTTTCTAGAAATATGCTTGTTTAAGAGATAACTGATTTTTATGCTCTTATTCAACAAATTTATTAGCTTTATGGCTGTTTTCTCCATGTGAAATGAAACTTGGGATTTTTAGACTTCTTTCTAAAATGCTCCCCAACATTTCTTTCAAAATCATGTCTTAATGTTTGTCTGCTAGTGAGTGAGGTTATCAGAGATTAACATTGAGACTGTATCCTAAAAACTATAATAGATGGGACTGTTGGGTTATACCTTATTTTTTCTTTTAAATTTTAATTATGTAAGTTTATCAATAGTGAATAATTAATAACTAAAATTTCATTAAGTTCGAATATAAAATACCAAATATCTATGATGTTTAATACAAATAACAAAGAAAAGTATATATTTTTAAATCAATCATTTTTTATGGGTACAAGTTTGGTTATATGATGATTGAAAACAGCTAATCATAGTCTAATTATGTCAAAATTAAGGTTCGTTTGATGTTTCAGACCATTTATATATTTGCCTTGTACTCTAAAAAGTGAAATGCCCATCTTCGTTTTTGTTCTATTATATTATAATAATTTAGAATCAAAGGATGTCGATTTGTATTATTGAACTTTGGAGCATGTAAGTATACATTTCAATGCTTGTCTACTAGATTTTTCGACTTTCGTTTTTTCTTAATCTATAATTATGAGGATCGTTAGTTAAATTATATTTTAAAGAACTAATCAATAAAAACCACTTACAAAGTTATATATTCATTATTTCTAAGTAATCTTTTGTTATAAGTCTCAATCTGATTTTTAATTGAACCTAAAGCTTGGAAATAATTTTTGAAGAATCTCCGAGTAGAGTTAGCAGTTGATATAATATTATTGTAGTTCGACCCTATACTATTATATCTAAATCCTCCCATGTAAATAAAAATGTTGATTTGTATTTTTGAACTTTTGAGTTATTTATATGCATAGTCATTGATACACTTTTGAATTATTTATATCATATTAATTAAAAATTGCGGACCTTAACGTTCATGTTCAACTTAGATTTTGAATGGATTAATATTGGAACTTTGGCCTCATGGCATTTAATGGTTTGTGCCAAAAGTAAATGAACGTCATTGAATTATAAAAATGTCAATGTTAATGAAAACTATAAAAATATTGATGTCAATAATTATATTAATTTATTAATGCCAAGAGAGTATAAATATTAAAGTAGGTTAGTTGTGAGACTAAAGTGTATCGGTGGTGATAGT

mRNA sequence

GGTGAAATAAGGAACATCCAACAATTTTGCTCTTCCAGATTTAACGAAGCGGCTCCGTTTGCTTTATCGGTTCTCCGATTCTCAGGAAATTGAAAATGAGAGGTAGAAGTTACAGTTACAGTCCATCACCACCAAGGAGTTATGGCAGAAGATATCGTAGCCCCAGTCCAAGGGGTCGTGGAAGCCGTCGAAGGGACCTGCCAACAAGTCTTTTGGTTAGGAACTTGAGGCACGACTGCAGGCCAGAGGACCTACGTGGATTATTTGGGCGGTTTGGTCCTCTTAAGGACATTTACTTGCCACGAGATTATTATTCTGGAGAACCGCGTGGTTTTGGATTTGTTCAGTTCGTTGATGCTGCTGATGCTGCTGATGCCAAGTATGAATTGGATGGCCAAGTTCTCCTAGGTCATGAACTAACTGTTGTGTTTGCTGAGGAGAACAGGAAGAGACCTGAAGAGATGAGAGCACGAGACTCATCAAGGGGTCGGTCCTACAGTTATAGCCACCGACATTCACCGTTGCGATATTCACGATCACCACACTATGATCGAAACTATTCACGTAGTCCAGAGTATTACTCCCCTGCACGGTCCAGACGATATTCAAGGTCGCCTAGGGGCCGGAGGTTCAGGGCGCAATCCTACTCAAGGTCACCATATGATTCAAGGGGCCGCAGTTACAGCCGAAGCAGGAGCCGTAGCTATAGCCGAAGTTATTCTAGGTGAGTAAAAATACTCTATTGAAGTTTTAAGAAGCTAGCTGATCTTTCTGAAGACCCAGAAACTATGATTTTAATTATGTTTGGAATTTGGATTTCGGAGGCTTGTATATGTTTTCTTTCTAGAAATATGCTTGTTTAAGAGATAACTGATTTTTATGCTCTTATTCAACAAATTTATTAGCTTTATGGCTGTTTTCTCCATGTGAAATGAAACTTGGGATTTTTAGACTTCTTTCTAAAATGCTCCCCAACATTTCTTTCAAAATCATGTCTTAATGTTTGTCTGCTAGTGAGTGAGGTTATCAGAGATTAACATTGAGACTGTATCCTAAAAACTATAATAGATGGGACTGTTGGGTTATACCTTATTTTTTCTTTTAAATTTTAATTATGTAAGTTTATCAATAGTGAATAATTAATAACTAAAATTTCATTAAGTTCGAATATAAAATACCAAATATCTATGATGTTTAATACAAATAACAAAGAAAAGTATATATTTTTAAATCAATCATTTTTTATGGGTACAAGTTTGGTTATATGATGATTGAAAACAGCTAATCATAGTCTAATTATGTCAAAATTAAGGTTCGTTTGATGTTTCAGACCATTTATATATTTGCCTTGTACTCTAAAAAGTGAAATGCCCATCTTCGTTTTTGTTCTATTATATTATAATAATTTAGAATCAAAGGATGTCGATTTGTATTATTGAACTTTGGAGCATGTAAGTATACATTTCAATGCTTGTCTACTAGATTTTTCGACTTTCGTTTTTTCTTAATCTATAATTATGAGGATCGTTAGTTAAATTATATTTTAAAGAACTAATCAATAAAAACCACTTACAAAGTTATATATTCATTATTTCTAAGTAATCTTTTGTTATAAGTCTCAATCTGATTTTTAATTGAACCTAAAGCTTGGAAATAATTTTTGAAGAATCTCCGAGTAGAGTTAGCAGTTGATATAATATTATTGTAGTTCGACCCTATACTATTATATCTAAATCCTCCCATGTAAATAAAAATGTTGATTTGTATTTTTGAACTTTTGAGTTATTTATATGCATAGTCATTGATACACTTTTGAATTATTTATATCATATTAATTAAAAATTGCGGACCTTAACGTTCATGTTCAACTTAGATTTTGAATGGATTAATATTGGAACTTTGGCCTCATGGCATTTAATGGTTTGTGCCAAAAGTAAATGAACGTCATTGAATTATAAAAATGTCAATGTTAATGAAAACTATAAAAATATTGATGTCAATAATTATATTAATTTATTAATGCCAAGAGAGTATAAATATTAAAGTAGGTTAGTTGTGAGACTAAAGTGTATCGGTGGTGATAGT

Coding sequence (CDS)

ATGAGAGGTAGAAGTTACAGTTACAGTCCATCACCACCAAGGAGTTATGGCAGAAGATATCGTAGCCCCAGTCCAAGGGGTCGTGGAAGCCGTCGAAGGGACCTGCCAACAAGTCTTTTGGTTAGGAACTTGAGGCACGACTGCAGGCCAGAGGACCTACGTGGATTATTTGGGCGGTTTGGTCCTCTTAAGGACATTTACTTGCCACGAGATTATTATTCTGGAGAACCGCGTGGTTTTGGATTTGTTCAGTTCGTTGATGCTGCTGATGCTGCTGATGCCAAGTATGAATTGGATGGCCAAGTTCTCCTAGGTCATGAACTAACTGTTGTGTTTGCTGAGGAGAACAGGAAGAGACCTGAAGAGATGAGAGCACGAGACTCATCAAGGGGTCGGTCCTACAGTTATAGCCACCGACATTCACCGTTGCGATATTCACGATCACCACACTATGATCGAAACTATTCACGTAGTCCAGAGTATTACTCCCCTGCACGGTCCAGACGATATTCAAGGTCGCCTAGGGGCCGGAGGTTCAGGGCGCAATCCTACTCAAGGTCACCATATGATTCAAGGGGCCGCAGTTACAGCCGAAGCAGGAGCCGTAGCTATAGCCGAAGTTATTCTAGGTGA

Protein sequence

MRGRSYSYSPSPPRSYGRRYRSPSPRGRGSRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRPEEMRARDSSRGRSYSYSHRHSPLRYSRSPHYDRNYSRSPEYYSPARSRRYSRSPRGRRFRAQSYSRSPYDSRGRSYSRSRSRSYSRSYSR
Homology
[Close]
BLAST of PI0016878 vs. ExPASy Swiss-Prot
Match: Q9SEU4 (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.5e-56
Identity = 142/222 (63.96%), Postives = 161/222 (72.52%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGR-GSRRRDLPTSLLVRNLRHDCRPEDLRGLFGR 60
           MRGR  SY+PSPPR YGRR RSPSPRGR G R RDLPTSLLVRNLRHDCR EDLR  F +
Sbjct: 1   MRGR--SYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 60

Query: 61  FGPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKR 120
           FGP+KDIYLPRDYY+G+PRGFGFVQF+D ADAADAK+ +DG +LLG ELTVVFAEENRK+
Sbjct: 61  FGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKK 120

Query: 121 PEEMRARDSSRGRSYSYSHRHSPLRYSRS----PHYDRNYSRSPEYYSPARSRRYSR--S 180
           P EMRAR+   GR +    R  P  YSRS    P   R+ SRS +YYSP   R + R  S
Sbjct: 121 PTEMRARERGGGR-FRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSIS 180

Query: 181 PRGRRFRA-QSYSRSPYD--SRGRSYS--RSRSRSYSRSYSR 211
           PR  R+   +SYSRSP    SRGRS +  R +SRS S S  R
Sbjct: 181 PREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSLSPSPRR 219

[Close]
BLAST of PI0016878 vs. ExPASy Swiss-Prot
Match: Q9LHP2 (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.0e-55
Identity = 139/220 (63.18%), Postives = 160/220 (72.73%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGR--GSRRRDLPTSLLVRNLRHDCRPEDLRGLFG 60
           MRGR  SY+PSPPR YGRR RSPSPRGR  GSR  DLPTSLLVRNLRHDCR EDLR  F 
Sbjct: 1   MRGR--SYTPSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFE 60

Query: 61  RFGPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRK 120
           +FGP+KDIYLPRDYY+G+PRGFGF+QF+D ADAA+AK+++DG +LLG ELTVVFAEENRK
Sbjct: 61  QFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRK 120

Query: 121 RPEEMRARDSSRGRSYSYSHRHSPLRYSRSP---HYDRNYSRSPEYYSPARSRRYSR--S 180
           +P EMR RD     +     R SP RYSRSP      R+ SRS  Y SP   R  SR  S
Sbjct: 121 KPTEMRTRDRGGRSNRFQDRRRSPPRYSRSPPPRRGRRSRSRSRGYNSPPAKRHQSRSVS 180

Query: 181 PRGRRF-RAQSYSRSP--YDSRGRSYSRSRSRSYSRSYSR 211
           P+ RR+ + +SYSRSP    SR RS S  R +S+SRS  R
Sbjct: 181 PQDRRYEKERSYSRSPPHNGSRVRSGSPGRVKSHSRSPRR 218

[Close]
BLAST of PI0016878 vs. ExPASy Swiss-Prot
Match: Q8L3X8 (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=3702 GN=SCL30 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.0e-31
Identity = 101/219 (46.12%), Postives = 122/219 (55.71%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSP----------RGRGSRRRDLPTSLLVRNLRHDCRP 60
           MR  S  Y   P R YG R RSP P           G G RR     SLLVRN+  DCRP
Sbjct: 1   MRRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRP 60

Query: 61  EDLRGLFGRFGPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTV 120
           E+LR  F RFGP++D+Y+PRDYYSG+PRGF FV+FVDA DA +A+  ++ +   G E+TV
Sbjct: 61  EELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITV 120

Query: 121 VFAEENRKRPEEMRARDSSRGRSYSYSHRHSPLR-YSRSPHYDRNYSRSPEYYSPARSRR 180
           V A E+RKRPEEMR +  +R R  S S   S  R  SRS    R+  R  +  S  RSR 
Sbjct: 121 VVASESRKRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDSRSRYRSRS 180

Query: 181 YSRSPRGRRFRAQSYSRSPYDSRGRSYSRSRSRSYSRSY 209
           YS +PR R          P      +YSR   RSYS  Y
Sbjct: 181 YSPAPRRR-------GGPPRGEEDENYSR---RSYSPGY 209

[Close]
BLAST of PI0016878 vs. ExPASy Swiss-Prot
Match: Q1PDV2 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.3e-30
Identity = 112/235 (47.66%), Postives = 132/235 (56.17%), Query Frame = 0 

Query: 2   RGRSYSYSP-----SPPRSY-----GRRYRSPSPRGRGSRRRDLPTSLLVRNLRHDCRPE 61
           R RS SYSP     SPPR        R    PS R   S     P+ LL+RNL  D RP 
Sbjct: 5   RSRSRSYSPRPRDRSPPRERKGYDDNRLRERPSSRDHESSG---PSGLLIRNLPLDARPN 64

Query: 62  DLRGLFGRFGPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVV 121
           DLR  F RFGPLKDIYLPR+YY+GEPRGFGFV++  A DAA+A   ++ +V+ G E+ +V
Sbjct: 65  DLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIV 124

Query: 122 FAEENRKRPEEMRARDSSRGRSYSY---SHRHSPLRY-----SRS-PHYDRNYS--RSPE 181
           FAEENRK P+EMR  + + GR   Y   SHR    RY     SRS P  +  +S  R  +
Sbjct: 125 FAEENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRSPPRRESRHSKVREDD 184

Query: 182 YYSP-ARSRRYSRS--PRGRRFRAQSYSRSPYDS------RGRSYSRSRSRSYSR 207
            YSP  RSR  SRS  PR  R       RSP +       R R  SRSRSRS SR
Sbjct: 185 LYSPRRRSRSISRSPLPRNEREYKSRNCRSPREERVLTPIRSRCLSRSRSRSLSR 236

[Close]
BLAST of PI0016878 vs. ExPASy Swiss-Prot
Match: O75494 (Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.1e-25
Identity = 78/182 (42.86%), Postives = 108/182 (59.34%), Query Frame = 0 

Query: 37  TSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKY 96
           TSL VRN+  D R EDLR  FGR+GP+ D+Y+P D+Y+  PRGF +VQF D  DA DA +
Sbjct: 10  TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69

Query: 97  ELDGQVLLGHELTVVFAEENRKRPEEMRARDSSRGRSYSYSHRHSPLRYSRSPHYDRNYS 156
            LD + + G ++ + FA+ +RK P +M+A++     S S    +   R SRS  Y+R  S
Sbjct: 70  NLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRS 129

Query: 157 RSPEY-------YSPARSRRYSRSPRGRRFRAQSYS-RSPYDSRGRSYSRSRSRSYSRSY 211
           RS  +       YSP  SR     P GR  R++S+S    +  R RS+SRS+S S SRS 
Sbjct: 130 RSRSFDYNYRRSYSPRNSR-----PTGRPRRSRSHSDNDRFKHRNRSFSRSKSNSRSRSK 186

[Close]
BLAST of PI0016878 vs. ExPASy TrEMBL
Match: A0A1S3B7U0 (serine/arginine-rich SC35-like splicing factor SCL33 OS=Cucumis melo OX=3656 GN=LOC103486733 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 5.0e-106
Identity = 203/210 (96.67%), Postives = 204/210 (97.14%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGSRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRRYRSPSPR RG RRRDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRSRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP
Sbjct: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP 120

Query: 121 EEMRARDSSRGRSYSYSHRHSPLRYSRSPHYDRNYSRSPEYYSPARSRRYSRSPRGRRFR 180
           EEMRARDSSRGRSYSYS RHSPLRYSRSPHYDR YSRSPEYYSPARSRRYSRSPRGRR+R
Sbjct: 121 EEMRARDSSRGRSYSYSRRHSPLRYSRSPHYDRKYSRSPEYYSPARSRRYSRSPRGRRYR 180

Query: 181 AQSYSRSPYDSRGRSYSRSRSRSYSRSYSR 211
            QSYSRSPYD RGRSYSRSRSRSYSRSYSR
Sbjct: 181 EQSYSRSPYDPRGRSYSRSRSRSYSRSYSR 210

[Close]
BLAST of PI0016878 vs. ExPASy TrEMBL
Match: A0A0A0LGW4 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G792060 PE=4 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 9.4e-105
Identity = 201/210 (95.71%), Postives = 203/210 (96.67%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGSRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRRYRSPSPRGRG RRRDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP
Sbjct: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP 120

Query: 121 EEMRARDSSRGRSYSYSHRHSPLRYSRSPHYDRNYSRSPEYYSPARSRRYSRSPRGRRFR 180
           EEMRARDSSRGRSYSYSHRHSPLRYS+SPHYDR YSR PEYYSPARSRRYSRSPRG R+R
Sbjct: 121 EEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRYSRSPRGPRYR 180

Query: 181 AQSYSRSPYDSRGRSYSRSRSRSYSRSYSR 211
            QSYSRSP D RGRSYSRSRSRSYSRSYSR
Sbjct: 181 EQSYSRSPSDPRGRSYSRSRSRSYSRSYSR 210

[Close]
BLAST of PI0016878 vs. ExPASy TrEMBL
Match: A0A6J1DCY5 (serine/arginine-rich SC35-like splicing factor SCL33 OS=Momordica charantia OX=3673 GN=LOC111019338 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 1.1e-94
Identity = 190/212 (89.62%), Postives = 195/212 (91.98%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGSRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRR+RSPSPR RG R RDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRHRSPSPRDRGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSGEPRGFGFVQFVD ADA DAKYELDGQVLLG ELTVVFAEENRKRP
Sbjct: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDPADATDAKYELDGQVLLGRELTVVFAEENRKRP 120

Query: 121 EEMRARDSSRGRSYSYSHRHSPLRYSRSPHYDRNYSRSPEYYSPARSRRYSR--SPRGRR 180
           EEMRARDSSRGRSY+Y  R SPLRYSRSPHYDR YSRSPEYYSPA+S RYSR  SPR RR
Sbjct: 121 EEMRARDSSRGRSYNY--RRSPLRYSRSPHYDRKYSRSPEYYSPAQSGRYSRSISPRDRR 180

Query: 181 FRAQSYSRSPYDSRGRSYSRSRSRSYSRSYSR 211
           +R +SY RSPYDSRGRSYSRSRSRSYSRSY R
Sbjct: 181 YRERSYLRSPYDSRGRSYSRSRSRSYSRSYCR 210

[Close]
BLAST of PI0016878 vs. ExPASy TrEMBL
Match: A0A6J1KYI3 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111498719 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 6.7e-87
Identity = 179/212 (84.43%), Postives = 190/212 (89.62%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGSRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRR RS SPRG G R RDLPTSLLVRNLRHDCRPEDLRGLFG+F
Sbjct: 1   MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGQF 60

Query: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSG+PRGFGFVQ++D ADAADAKYELDGQVLLG ELTVVFAEENRKRP
Sbjct: 61  GPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 120

Query: 121 EEMRARDSSRGRSYSYSHRHSPLRYSRSPHYDRNYSRSPEYYSPARSRRYSR--SPRGRR 180
           E+MRARDSSRGRSYSY  R SPL+YS+SP + R YSRSPEYYSPARSRRYSR  SPR + 
Sbjct: 121 EQMRARDSSRGRSYSY--RRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISPRDQM 180

Query: 181 FRAQSYSRSPYDSRGRSYSRSRSRSYSRSYSR 211
            R +SYSRSPY+SR R YSRSRSRS SRSYSR
Sbjct: 181 HRERSYSRSPYNSRDRGYSRSRSRSRSRSYSR 210

[Close]
BLAST of PI0016878 vs. ExPASy TrEMBL
Match: A0A6J1L0E4 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498719 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 6.7e-87
Identity = 179/212 (84.43%), Postives = 190/212 (89.62%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGSRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRR RS SPRG G R RDLPTSLLVRNLRHDCRPEDLRGLFG+F
Sbjct: 5   MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGQF 64

Query: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSG+PRGFGFVQ++D ADAADAKYELDGQVLLG ELTVVFAEENRKRP
Sbjct: 65  GPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 124

Query: 121 EEMRARDSSRGRSYSYSHRHSPLRYSRSPHYDRNYSRSPEYYSPARSRRYSR--SPRGRR 180
           E+MRARDSSRGRSYSY  R SPL+YS+SP + R YSRSPEYYSPARSRRYSR  SPR + 
Sbjct: 125 EQMRARDSSRGRSYSY--RRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISPRDQM 184

Query: 181 FRAQSYSRSPYDSRGRSYSRSRSRSYSRSYSR 211
            R +SYSRSPY+SR R YSRSRSRS SRSYSR
Sbjct: 185 HRERSYSRSPYNSRDRGYSRSRSRSRSRSYSR 214

[Close]
BLAST of PI0016878 vs. NCBI nr
Match: XP_008443002.1 (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Cucumis melo])

HSP 1 Score: 393.7 bits (1010), Expect = 1.0e-105
Identity = 203/210 (96.67%), Postives = 204/210 (97.14%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGSRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRRYRSPSPR RG RRRDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRSRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP
Sbjct: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP 120

Query: 121 EEMRARDSSRGRSYSYSHRHSPLRYSRSPHYDRNYSRSPEYYSPARSRRYSRSPRGRRFR 180
           EEMRARDSSRGRSYSYS RHSPLRYSRSPHYDR YSRSPEYYSPARSRRYSRSPRGRR+R
Sbjct: 121 EEMRARDSSRGRSYSYSRRHSPLRYSRSPHYDRKYSRSPEYYSPARSRRYSRSPRGRRYR 180

Query: 181 AQSYSRSPYDSRGRSYSRSRSRSYSRSYSR 211
            QSYSRSPYD RGRSYSRSRSRSYSRSYSR
Sbjct: 181 EQSYSRSPYDPRGRSYSRSRSRSYSRSYSR 210

[Close]
BLAST of PI0016878 vs. NCBI nr
Match: XP_011652066.1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 [Cucumis sativus] >KAE8645777.1 hypothetical protein Csa_017367 [Cucumis sativus])

HSP 1 Score: 389.4 bits (999), Expect = 1.9e-104
Identity = 201/210 (95.71%), Postives = 203/210 (96.67%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGSRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRRYRSPSPRGRG RRRDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP
Sbjct: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP 120

Query: 121 EEMRARDSSRGRSYSYSHRHSPLRYSRSPHYDRNYSRSPEYYSPARSRRYSRSPRGRRFR 180
           EEMRARDSSRGRSYSYSHRHSPLRYS+SPHYDR YSR PEYYSPARSRRYSRSPRG R+R
Sbjct: 121 EEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRYSRSPRGPRYR 180

Query: 181 AQSYSRSPYDSRGRSYSRSRSRSYSRSYSR 211
            QSYSRSP D RGRSYSRSRSRSYSRSYSR
Sbjct: 181 EQSYSRSPSDPRGRSYSRSRSRSYSRSYSR 210

[Close]
BLAST of PI0016878 vs. NCBI nr
Match: XP_011652068.1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 [Cucumis sativus])

HSP 1 Score: 389.4 bits (999), Expect = 1.9e-104
Identity = 201/210 (95.71%), Postives = 203/210 (96.67%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGSRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRRYRSPSPRGRG RRRDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP
Sbjct: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP 120

Query: 121 EEMRARDSSRGRSYSYSHRHSPLRYSRSPHYDRNYSRSPEYYSPARSRRYSRSPRGRRFR 180
           EEMRARDSSRGRSYSYSHRHSPLRYS+SPHYDR YSR PEYYSPARSRRYSRSPRG R+R
Sbjct: 121 EEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRYSRSPRGPRYR 180

Query: 181 AQSYSRSPYDSRGRSYSRSRSRSYSRSYSR 211
            QSYSRSP D RGRSYSRSRSRSYSRSYSR
Sbjct: 181 EQSYSRSPSDPRGRSYSRSRSRSYSRSYSR 210

[Close]
BLAST of PI0016878 vs. NCBI nr
Match: XP_031739396.1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 [Cucumis sativus])

HSP 1 Score: 384.8 bits (987), Expect = 4.8e-103
Identity = 201/211 (95.26%), Postives = 203/211 (96.21%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGSRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRRYRSPSPRGRG RRRDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 61  GPLKDIYLPRDYYSGEPRGFGFVQF-VDAADAADAKYELDGQVLLGHELTVVFAEENRKR 120
           GPLKDIYLPRDYYSGEPRGFGFVQF VDAADAADAKYELDGQVLLGHELTVVFAEENRKR
Sbjct: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVVDAADAADAKYELDGQVLLGHELTVVFAEENRKR 120

Query: 121 PEEMRARDSSRGRSYSYSHRHSPLRYSRSPHYDRNYSRSPEYYSPARSRRYSRSPRGRRF 180
           PEEMRARDSSRGRSYSYSHRHSPLRYS+SPHYDR YSR PEYYSPARSRRYSRSPRG R+
Sbjct: 121 PEEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRYSRSPRGPRY 180

Query: 181 RAQSYSRSPYDSRGRSYSRSRSRSYSRSYSR 211
           R QSYSRSP D RGRSYSRSRSRSYSRSYSR
Sbjct: 181 REQSYSRSPSDPRGRSYSRSRSRSYSRSYSR 211

[Close]
BLAST of PI0016878 vs. NCBI nr
Match: KAE8651124.1 (hypothetical protein Csa_000954 [Cucumis sativus])

HSP 1 Score: 384.8 bits (987), Expect = 4.8e-103
Identity = 201/211 (95.26%), Postives = 203/211 (96.21%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGSRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRRYRSPSPRGRG RRRDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 5   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 64

Query: 61  GPLKDIYLPRDYYSGEPRGFGFVQF-VDAADAADAKYELDGQVLLGHELTVVFAEENRKR 120
           GPLKDIYLPRDYYSGEPRGFGFVQF VDAADAADAKYELDGQVLLGHELTVVFAEENRKR
Sbjct: 65  GPLKDIYLPRDYYSGEPRGFGFVQFVVDAADAADAKYELDGQVLLGHELTVVFAEENRKR 124

Query: 121 PEEMRARDSSRGRSYSYSHRHSPLRYSRSPHYDRNYSRSPEYYSPARSRRYSRSPRGRRF 180
           PEEMRARDSSRGRSYSYSHRHSPLRYS+SPHYDR YSR PEYYSPARSRRYSRSPRG R+
Sbjct: 125 PEEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRYSRSPRGPRY 184

Query: 181 RAQSYSRSPYDSRGRSYSRSRSRSYSRSYSR 211
           R QSYSRSP D RGRSYSRSRSRSYSRSYSR
Sbjct: 185 REQSYSRSPSDPRGRSYSRSRSRSYSRSYSR 215

[Close]
BLAST of PI0016878 vs. TAIR 10
Match: AT1G55310.2 (SC35-like splicing factor 33 )

HSP 1 Score: 219.9 bits (559), Expect = 1.9e-57
Identity = 139/217 (64.06%), Postives = 158/217 (72.81%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGR-GSRRRDLPTSLLVRNLRHDCRPEDLRGLFGR 60
           MRGR  SY+PSPPR YGRR RSPSPRGR G R RDLPTSLLVRNLRHDCR EDLR  F +
Sbjct: 1   MRGR--SYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 60

Query: 61  FGPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKR 120
           FGP+KDIYLPRDYY+G+PRGFGFVQF+D ADAADAK+ +DG +LLG ELTVVFAEENRK+
Sbjct: 61  FGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKK 120

Query: 121 PEEMRARDSSRGRSYSYSHRHSPLRYSRS----PHYDRNYSRSPEYYSPARSRRYSR--S 180
           P EMRAR+   GR +    R  P  YSRS    P   R+ SRS +YYSP   R + R  S
Sbjct: 121 PTEMRARERGGGR-FRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSIS 180

Query: 181 PRGRRFRA-QSYSRSPYD--SRGRSYSRSRSRSYSRS 208
           PR  R+   +SYSRSP    SRGRS +  R +S S S
Sbjct: 181 PREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSLS 214

[Close]
BLAST of PI0016878 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 219.5 bits (558), Expect = 2.5e-57
Identity = 142/222 (63.96%), Postives = 161/222 (72.52%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGR-GSRRRDLPTSLLVRNLRHDCRPEDLRGLFGR 60
           MRGR  SY+PSPPR YGRR RSPSPRGR G R RDLPTSLLVRNLRHDCR EDLR  F +
Sbjct: 1   MRGR--SYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 60

Query: 61  FGPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKR 120
           FGP+KDIYLPRDYY+G+PRGFGFVQF+D ADAADAK+ +DG +LLG ELTVVFAEENRK+
Sbjct: 61  FGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKK 120

Query: 121 PEEMRARDSSRGRSYSYSHRHSPLRYSRS----PHYDRNYSRSPEYYSPARSRRYSR--S 180
           P EMRAR+   GR +    R  P  YSRS    P   R+ SRS +YYSP   R + R  S
Sbjct: 121 PTEMRARERGGGR-FRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSIS 180

Query: 181 PRGRRFRA-QSYSRSPYD--SRGRSYS--RSRSRSYSRSYSR 211
           PR  R+   +SYSRSP    SRGRS +  R +SRS S S  R
Sbjct: 181 PREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSLSPSPRR 219

[Close]
BLAST of PI0016878 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 218.0 bits (554), Expect = 7.2e-57
Identity = 139/220 (63.18%), Postives = 160/220 (72.73%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGR--GSRRRDLPTSLLVRNLRHDCRPEDLRGLFG 60
           MRGR  SY+PSPPR YGRR RSPSPRGR  GSR  DLPTSLLVRNLRHDCR EDLR  F 
Sbjct: 1   MRGR--SYTPSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFE 60

Query: 61  RFGPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRK 120
           +FGP+KDIYLPRDYY+G+PRGFGF+QF+D ADAA+AK+++DG +LLG ELTVVFAEENRK
Sbjct: 61  QFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRK 120

Query: 121 RPEEMRARDSSRGRSYSYSHRHSPLRYSRSP---HYDRNYSRSPEYYSPARSRRYSR--S 180
           +P EMR RD     +     R SP RYSRSP      R+ SRS  Y SP   R  SR  S
Sbjct: 121 KPTEMRTRDRGGRSNRFQDRRRSPPRYSRSPPPRRGRRSRSRSRGYNSPPAKRHQSRSVS 180

Query: 181 PRGRRF-RAQSYSRSP--YDSRGRSYSRSRSRSYSRSYSR 211
           P+ RR+ + +SYSRSP    SR RS S  R +S+SRS  R
Sbjct: 181 PQDRRYEKERSYSRSPPHNGSRVRSGSPGRVKSHSRSPRR 218

[Close]
BLAST of PI0016878 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 )

HSP 1 Score: 212.2 bits (539), Expect = 3.9e-55
Identity = 141/234 (60.26%), Postives = 160/234 (68.38%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGR-GSRRRDLPTSLLVRNLRHDCRPEDLRGLFGR 60
           MRGR  SY+PSPPR YGRR RSPSPRGR G R RDLPTSLLVRNLRHDCR EDLR  F +
Sbjct: 1   MRGR--SYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 60

Query: 61  FGPLKDIYLPRDYYSG------------EPRGFGFVQFVDAADAADAKYELDGQVLLGHE 120
           FGP+KDIYLPRDYY+G            +PRGFGFVQF+D ADAADAK+ +DG +LLG E
Sbjct: 61  FGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQFMDPADAADAKHHMDGYLLLGRE 120

Query: 121 LTVVFAEENRKRPEEMRARDSSRGRSYSYSHRHSPLRYSRS----PHYDRNYSRSPEYYS 180
           LTVVFAEENRK+P EMRAR+   G  +    R  P  YSRS    P   R+ SRS +YYS
Sbjct: 121 LTVVFAEENRKKPTEMRARERGGGSRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYS 180

Query: 181 PARSRRYSR--SPRGRRFRA-QSYSRSPYD--SRGRSYS--RSRSRSYSRSYSR 211
           P   R + R  SPR  R+   +SYSRSP    SRGRS +  R +SRS S S  R
Sbjct: 181 PPPRRHHPRSISPREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSLSPSPRR 232

[Close]
BLAST of PI0016878 vs. TAIR 10
Match: AT3G55460.1 (SC35-like splicing factor 30 )

HSP 1 Score: 136.0 bits (341), Expect = 3.6e-32
Identity = 101/219 (46.12%), Postives = 122/219 (55.71%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSP----------RGRGSRRRDLPTSLLVRNLRHDCRP 60
           MR  S  Y   P R YG R RSP P           G G RR     SLLVRN+  DCRP
Sbjct: 1   MRRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRP 60

Query: 61  EDLRGLFGRFGPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTV 120
           E+LR  F RFGP++D+Y+PRDYYSG+PRGF FV+FVDA DA +A+  ++ +   G E+TV
Sbjct: 61  EELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITV 120

Query: 121 VFAEENRKRPEEMRARDSSRGRSYSYSHRHSPLR-YSRSPHYDRNYSRSPEYYSPARSRR 180
           V A E+RKRPEEMR +  +R R  S S   S  R  SRS    R+  R  +  S  RSR 
Sbjct: 121 VVASESRKRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDSRSRYRSRS 180

Query: 181 YSRSPRGRRFRAQSYSRSPYDSRGRSYSRSRSRSYSRSY 209
           YS +PR R          P      +YSR   RSYS  Y
Sbjct: 181 YSPAPRRR-------GGPPRGEEDENYSR---RSYSPGY 209

The following BLAST results are available for this feature:
BLAST of PI0016878 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SEU43.5e-5663.96Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=... [more]
Q9LHP21.0e-5563.18Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX... [more]
Q8L3X85.0e-3146.12Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=... [more]
Q1PDV23.3e-3047.66Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=... [more]
O754944.1e-2542.86Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 S... [more]
BLAST of PI0016878 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3B7U05.0e-10696.67serine/arginine-rich SC35-like splicing factor SCL33 OS=Cucumis melo OX=3656 GN=... [more]
A0A0A0LGW49.4e-10595.71RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G792060 PE=4 SV... [more]
A0A6J1DCY51.1e-9489.62serine/arginine-rich SC35-like splicing factor SCL33 OS=Momordica charantia OX=3... [more]
A0A6J1KYI36.7e-8784.43serine/arginine-rich SC35-like splicing factor SCL33 isoform X3 OS=Cucurbita max... [more]
A0A6J1L0E46.7e-8784.43serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 OS=Cucurbita max... [more]
BLAST of PI0016878 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008443002.11.0e-10596.67PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Cucumis melo][more]
XP_011652066.11.9e-10495.71serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 [Cucumis sativus... [more]
XP_011652068.11.9e-10495.71serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 [Cucumis sativus... [more]
XP_031739396.14.8e-10395.26serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 [Cucumis sativus... [more]
KAE8651124.14.8e-10395.26hypothetical protein Csa_000954 [Cucumis sativus][more]
BLAST of PI0016878 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G55310.21.9e-5764.06SC35-like splicing factor 33 [more]
AT1G55310.12.5e-5763.96SC35-like splicing factor 33 [more]
AT3G13570.17.2e-5763.18SC35-like splicing factor 30A [more]
AT1G55310.33.9e-5560.26SC35-like splicing factor 33 [more]
AT3G55460.13.6e-3246.12SC35-like splicing factor 30 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 38..111
e-value: 8.2E-22
score: 88.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 39..108
e-value: 6.0E-19
score: 67.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 37..115
score: 17.284681
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 24..142
e-value: 9.2E-26
score: 92.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..210
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 178..210
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..134
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 1..208
NoneNo IPR availablePANTHERPTHR23147:SF155SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30Acoord: 1..208
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 37..140

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0016878.1PI0016878.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016607 nuclear speck
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding