Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTAAGGAAAAAAGAGGTCTTGGCATTACTAATATTGCTACTACAAATACTGCTCTCCTTTGTAAATGGCTATGGAGATACCATACGGAGTCCTCTGCTTTTTGGAGAAAATTCATTGATACCAAATACTCCAAAACCCAGTCTGGTAATTTGCCTCTTACTGGTAGATACAGTAGCAATAATGTCCCTTTGCGCTCAATCATAAAAAATCTTGATTGGTTCAATGCTCATATTGATTGGAAGATCAATAATGGTGATTACCTTTCTTTTTGGCACAGCAACTGGAGTGCAAATGGAATCCTGGCTCGTTTCATTCCGAGAATTTTCACTCTCTCAAATATTCAAAATGGCACCATCAAAAAAGTTTGGAACAACAATCTTATGGATTGGGATATTAAACCGAGGAGACCTCTTAATGACAGGGAGCAAAATCTATGGAACTCTACAAAAGTATCTCTTACTATTCCATCCATTGATAGTTGCAGTGACGTTCCTATCTGGAAGGCAAATGGCAATTCTACTTTCTCCACTTGTTGTGCAAAGATTGTTCTTTCCCCTCCTTCTAATATCAACCCTACTGACAGCTCATATAAAGCTTTGTGA
mRNA sequence
ATGCCTAAGGAAAAAAGAGGTCTTGGCATTACTAATATTGCTACTACAAATACTGCTCTCCTTTGTAAATGGCTATGGAGATACCATACGGAGTCCTCTGCTTTTTGGAGAAAATTCATTGATACCAAATACTCCAAAACCCAGTCTGGTAATTTGCCTCTTACTGGTAGATACAGTAGCAATAATGTCCCTTTGCGCTCAATCATAAAAAATCTTGATTGGTTCAATGCTCATATTGATTGGAAGATCAATAATGGTGATTACCTTTCTTTTTGGCACAGCAACTGGAGTGCAAATGGAATCCTGGCTCGTTTCATTCCGAGAATTTTCACTCTCTCAAATATTCAAAATGGCACCATCAAAAAAGTTTGGAACAACAATCTTATGGATTGGGATATTAAACCGAGGAGACCTCTTAATGACAGGGAGCAAAATCTATGGAACTCTACAAAAGTATCTCTTACTATTCCATCCATTGATAGTTGCAGTGACGTTCCTATCTGGAAGGCAAATGGCAATTCTACTTTCTCCACTTGTTGTGCAAAGATTGTTCTTTCCCCTCCTTCTAATATCAACCCTACTGACAGCTCATATAAAGCTTTGTGA
Coding sequence (CDS)
ATGCCTAAGGAAAAAAGAGGTCTTGGCATTACTAATATTGCTACTACAAATACTGCTCTCCTTTGTAAATGGCTATGGAGATACCATACGGAGTCCTCTGCTTTTTGGAGAAAATTCATTGATACCAAATACTCCAAAACCCAGTCTGGTAATTTGCCTCTTACTGGTAGATACAGTAGCAATAATGTCCCTTTGCGCTCAATCATAAAAAATCTTGATTGGTTCAATGCTCATATTGATTGGAAGATCAATAATGGTGATTACCTTTCTTTTTGGCACAGCAACTGGAGTGCAAATGGAATCCTGGCTCGTTTCATTCCGAGAATTTTCACTCTCTCAAATATTCAAAATGGCACCATCAAAAAAGTTTGGAACAACAATCTTATGGATTGGGATATTAAACCGAGGAGACCTCTTAATGACAGGGAGCAAAATCTATGGAACTCTACAAAAGTATCTCTTACTATTCCATCCATTGATAGTTGCAGTGACGTTCCTATCTGGAAGGCAAATGGCAATTCTACTTTCTCCACTTGTTGTGCAAAGATTGTTCTTTCCCCTCCTTCTAATATCAACCCTACTGACAGCTCATATAAAGCTTTGTGA
Protein sequence
MPKEKRGLGITNIATTNTALLCKWLWRYHTESSAFWRKFIDTKYSKTQSGNLPLTGRYSSNNVPLRSIIKNLDWFNAHIDWKINNGDYLSFWHSNWSANGILARFIPRIFTLSNIQNGTIKKVWNNNLMDWDIKPRRPLNDREQNLWNSTKVSLTIPSIDSCSDVPIWKANGNSTFSTCCAKIVLSPPSNINPTDSSYKAL
Homology
BLAST of PI0016512 vs. ExPASy TrEMBL
Match:
A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)
HSP 1 Score: 194.1 bits (492), Expect = 5.5e-46
Identity = 90/204 (44.12%), Postives = 127/204 (62.25%), Query Frame = 0
Query: 2 PKEKRGLGITNIATTNTALLCKWLWRYHTESSAFWRKFIDTKYSKTQSGNLPLTGRYSSN 61
PKEK GLGI ++ +TN ALLCKWLW++ TE W++ I +KY + + G P G+YSSN
Sbjct: 670 PKEKGGLGIHSVHSTNFALLCKWLWKFLTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSN 729
Query: 62 NVPLRSIIKNLDWFNAHIDWKINNGDYLSFWHSNWSANGILARFIPRIFTLSNIQNGTIK 121
N P +++ + WF +I WK+N+G+ +SFW NW+ N L+ +PR+F LS + G++K
Sbjct: 730 NSPWKAVTNCISWFYKNIGWKVNDGEDISFWLDNWNGNSPLSLVVPRLFALSTNKKGSVK 789
Query: 122 KVWNNNLMDWDIKPRRPLNDREQNLWNSTKVSLTIPSIDSCSDVPIWKANGNSTFSTCCA 181
+WN +L DW+I RPL D E+NLW++ K SL P D P+WK N N+ F T
Sbjct: 790 DLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASI 849
Query: 182 KIVLS----PPSNINPTDSSYKAL 202
K LS P+N +P S YK L
Sbjct: 850 KKDLSEASASPTNFHP--SLYKTL 871
BLAST of PI0016512 vs. ExPASy TrEMBL
Match:
A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)
HSP 1 Score: 192.2 bits (487), Expect = 2.1e-45
Identity = 90/204 (44.12%), Postives = 126/204 (61.76%), Query Frame = 0
Query: 2 PKEKRGLGITNIATTNTALLCKWLWRYHTESSAFWRKFIDTKYSKTQSGNLPLTGRYSSN 61
PKEK GLGI + +TN ALLCKWLW++ TE W++ I +KY + + G P G+YSSN
Sbjct: 576 PKEKGGLGIHFVHSTNFALLCKWLWKFLTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSN 635
Query: 62 NVPLRSIIKNLDWFNAHIDWKINNGDYLSFWHSNWSANGILARFIPRIFTLSNIQNGTIK 121
N P +++ + WF +I WK+N+G+ +SFW NW+ N L+ +PR+F LS + G++K
Sbjct: 636 NSPWKAVTNCISWFYKNIGWKVNDGEDISFWLDNWNGNSPLSLAVPRLFALSTNKKGSVK 695
Query: 122 KVWNNNLMDWDIKPRRPLNDREQNLWNSTKVSLTIPSIDSCSDVPIWKANGNSTFSTCCA 181
+WN +L DW+I RPL D E+NLW++ K SL P D P+WK N N+ F T
Sbjct: 696 DLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASI 755
Query: 182 KIVLS----PPSNINPTDSSYKAL 202
K LS P+N +P S YK L
Sbjct: 756 KKDLSEASASPTNFHP--SLYKTL 777
BLAST of PI0016512 vs. ExPASy TrEMBL
Match:
A0A5A7US62 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003960 PE=4 SV=1)
HSP 1 Score: 189.1 bits (479), Expect = 1.8e-44
Identity = 88/198 (44.44%), Postives = 127/198 (64.14%), Query Frame = 0
Query: 2 PKEKRGLGITNIATTNTALLCKWLWRYHTESSAFWRKFIDTKYSKTQSGNLPLTGRYSSN 61
PKE GLGI+ + TN ALLCKWLWRYH ES++ W+K ID KY+K G++P+ GR SS
Sbjct: 1458 PKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSA 1517
Query: 62 NVPLRSIIKNLDWFNAHIDWKINNGDYLSFWHSNWSANGILARFIPRIFTLSNIQNGTIK 121
N P +I K DW+ + I W N+G LSFWHS W N L+ IPR++ LSN+Q+ T+K
Sbjct: 1518 NSPWNAIKKWKDWYESKISWLPNDGSSLSFWHSKWHNNIPLSLQIPRLYALSNMQSATVK 1577
Query: 122 KVWNNNLMDWDIKPRRPLNDREQNLWNSTKVSLTIPSIDSCSDVPIWKANGNSTFSTCCA 181
++W+ DW++KPRRPLN+REQ W+S K+SL + P W + + ++ A
Sbjct: 1578 EIWDQGSDDWNMKPRRPLNEREQQTWDSIKMSLPRIHNNRGMCKPTWNPSDSKKYTVASA 1637
Query: 182 KIVLSPPSNINPTDSSYK 200
K + S+I P +++++
Sbjct: 1638 KDIAFKESSI-PKETNWE 1654
BLAST of PI0016512 vs. ExPASy TrEMBL
Match:
A0A5D3CA17 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00050 PE=4 SV=1)
HSP 1 Score: 189.1 bits (479), Expect = 1.8e-44
Identity = 88/198 (44.44%), Postives = 127/198 (64.14%), Query Frame = 0
Query: 2 PKEKRGLGITNIATTNTALLCKWLWRYHTESSAFWRKFIDTKYSKTQSGNLPLTGRYSSN 61
PKE GLGI+ + TN ALLCKWLWRYH ES++ W+K ID KY+K G++P+ GR SS
Sbjct: 1458 PKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSA 1517
Query: 62 NVPLRSIIKNLDWFNAHIDWKINNGDYLSFWHSNWSANGILARFIPRIFTLSNIQNGTIK 121
N P +I K DW+ + I W N+G LSFWHS W N L+ IPR++ LSN+Q+ T+K
Sbjct: 1518 NSPWNAIKKWKDWYESKISWLPNDGSSLSFWHSKWHNNIPLSLQIPRLYALSNMQSATVK 1577
Query: 122 KVWNNNLMDWDIKPRRPLNDREQNLWNSTKVSLTIPSIDSCSDVPIWKANGNSTFSTCCA 181
++W+ DW++KPRRPLN+REQ W+S K+SL + P W + + ++ A
Sbjct: 1578 EIWDQGSDDWNMKPRRPLNEREQQTWDSIKMSLPRIHNNRGMCKPTWNPSDSKKYTVASA 1637
Query: 182 KIVLSPPSNINPTDSSYK 200
K + S+I P +++++
Sbjct: 1638 KDIAFKESSI-PKETNWE 1654
BLAST of PI0016512 vs. ExPASy TrEMBL
Match:
A0A5A7T5L3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G00210 PE=4 SV=1)
HSP 1 Score: 188.7 bits (478), Expect = 2.3e-44
Identity = 91/195 (46.67%), Postives = 119/195 (61.03%), Query Frame = 0
Query: 2 PKEKRGLGITNIATTNTALLCKWLWRYHTESSAFWRKFIDTKYSKTQSGNLPLT-GRYSS 61
PK K GLGITN+ NTALLCKWLWR+ E + W + I KY G+ P T G+YSS
Sbjct: 490 PKCKGGLGITNVKVINTALLCKWLWRFQEEKDSLWVEIISAKYKGHHIGDFPPTIGKYSS 549
Query: 62 NNVPLRSIIKNLDWFNAHIDWKINNGDYLSFWHSNWSANGILARFIPRIFTLSNIQNGTI 121
P R IIK + WF H W+I +G+ LSFWHSNW A+G L+ PR++TLS QN TI
Sbjct: 550 MKAPWRQIIKEIGWFQNHSSWEIKDGENLSFWHSNWIASGSLSNTYPRLYTLSKAQNATI 609
Query: 122 KKVWNNNLMDWDIKPRRPLNDREQNLWNSTKVSLTIPSIDSCSDVPIWKANGNSTFSTCC 181
+++W+ N DW++ PRRPLNDRE LW + K L I +++ + IW N T++
Sbjct: 610 EELWDPNTNDWNLHPRRPLNDREIELWTNLKGILKILTLNGGKNNMIWTPNDKGTYTAAS 669
Query: 182 AKIVL---SPPSNIN 193
AK L P N+N
Sbjct: 670 AKRQLLSERPTPNLN 684
BLAST of PI0016512 vs. NCBI nr
Match:
KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 194.1 bits (492), Expect = 1.1e-45
Identity = 90/204 (44.12%), Postives = 127/204 (62.25%), Query Frame = 0
Query: 2 PKEKRGLGITNIATTNTALLCKWLWRYHTESSAFWRKFIDTKYSKTQSGNLPLTGRYSSN 61
PKEK GLGI ++ +TN ALLCKWLW++ TE W++ I +KY + + G P G+YSSN
Sbjct: 670 PKEKGGLGIHSVHSTNFALLCKWLWKFLTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSN 729
Query: 62 NVPLRSIIKNLDWFNAHIDWKINNGDYLSFWHSNWSANGILARFIPRIFTLSNIQNGTIK 121
N P +++ + WF +I WK+N+G+ +SFW NW+ N L+ +PR+F LS + G++K
Sbjct: 730 NSPWKAVTNCISWFYKNIGWKVNDGEDISFWLDNWNGNSPLSLVVPRLFALSTNKKGSVK 789
Query: 122 KVWNNNLMDWDIKPRRPLNDREQNLWNSTKVSLTIPSIDSCSDVPIWKANGNSTFSTCCA 181
+WN +L DW+I RPL D E+NLW++ K SL P D P+WK N N+ F T
Sbjct: 790 DLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASI 849
Query: 182 KIVLS----PPSNINPTDSSYKAL 202
K LS P+N +P S YK L
Sbjct: 850 KKDLSEASASPTNFHP--SLYKTL 871
BLAST of PI0016512 vs. NCBI nr
Match:
KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 192.2 bits (487), Expect = 4.3e-45
Identity = 90/204 (44.12%), Postives = 126/204 (61.76%), Query Frame = 0
Query: 2 PKEKRGLGITNIATTNTALLCKWLWRYHTESSAFWRKFIDTKYSKTQSGNLPLTGRYSSN 61
PKEK GLGI + +TN ALLCKWLW++ TE W++ I +KY + + G P G+YSSN
Sbjct: 576 PKEKGGLGIHFVHSTNFALLCKWLWKFLTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSN 635
Query: 62 NVPLRSIIKNLDWFNAHIDWKINNGDYLSFWHSNWSANGILARFIPRIFTLSNIQNGTIK 121
N P +++ + WF +I WK+N+G+ +SFW NW+ N L+ +PR+F LS + G++K
Sbjct: 636 NSPWKAVTNCISWFYKNIGWKVNDGEDISFWLDNWNGNSPLSLAVPRLFALSTNKKGSVK 695
Query: 122 KVWNNNLMDWDIKPRRPLNDREQNLWNSTKVSLTIPSIDSCSDVPIWKANGNSTFSTCCA 181
+WN +L DW+I RPL D E+NLW++ K SL P D P+WK N N+ F T
Sbjct: 696 DLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASI 755
Query: 182 KIVLS----PPSNINPTDSSYKAL 202
K LS P+N +P S YK L
Sbjct: 756 KKDLSEASASPTNFHP--SLYKTL 777
BLAST of PI0016512 vs. NCBI nr
Match:
TYK08190.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 189.1 bits (479), Expect = 3.7e-44
Identity = 88/198 (44.44%), Postives = 127/198 (64.14%), Query Frame = 0
Query: 2 PKEKRGLGITNIATTNTALLCKWLWRYHTESSAFWRKFIDTKYSKTQSGNLPLTGRYSSN 61
PKE GLGI+ + TN ALLCKWLWRYH ES++ W+K ID KY+K G++P+ GR SS
Sbjct: 1458 PKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSA 1517
Query: 62 NVPLRSIIKNLDWFNAHIDWKINNGDYLSFWHSNWSANGILARFIPRIFTLSNIQNGTIK 121
N P +I K DW+ + I W N+G LSFWHS W N L+ IPR++ LSN+Q+ T+K
Sbjct: 1518 NSPWNAIKKWKDWYESKISWLPNDGSSLSFWHSKWHNNIPLSLQIPRLYALSNMQSATVK 1577
Query: 122 KVWNNNLMDWDIKPRRPLNDREQNLWNSTKVSLTIPSIDSCSDVPIWKANGNSTFSTCCA 181
++W+ DW++KPRRPLN+REQ W+S K+SL + P W + + ++ A
Sbjct: 1578 EIWDQGSDDWNMKPRRPLNEREQQTWDSIKMSLPRIHNNRGMCKPTWNPSDSKKYTVASA 1637
Query: 182 KIVLSPPSNINPTDSSYK 200
K + S+I P +++++
Sbjct: 1638 KDIAFKESSI-PKETNWE 1654
BLAST of PI0016512 vs. NCBI nr
Match:
KAA0057507.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 189.1 bits (479), Expect = 3.7e-44
Identity = 88/198 (44.44%), Postives = 127/198 (64.14%), Query Frame = 0
Query: 2 PKEKRGLGITNIATTNTALLCKWLWRYHTESSAFWRKFIDTKYSKTQSGNLPLTGRYSSN 61
PKE GLGI+ + TN ALLCKWLWRYH ES++ W+K ID KY+K G++P+ GR SS
Sbjct: 1458 PKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKYTKNHQGDIPVVGRNSSA 1517
Query: 62 NVPLRSIIKNLDWFNAHIDWKINNGDYLSFWHSNWSANGILARFIPRIFTLSNIQNGTIK 121
N P +I K DW+ + I W N+G LSFWHS W N L+ IPR++ LSN+Q+ T+K
Sbjct: 1518 NSPWNAIKKWKDWYESKISWLPNDGSSLSFWHSKWHNNIPLSLQIPRLYALSNMQSATVK 1577
Query: 122 KVWNNNLMDWDIKPRRPLNDREQNLWNSTKVSLTIPSIDSCSDVPIWKANGNSTFSTCCA 181
++W+ DW++KPRRPLN+REQ W+S K+SL + P W + + ++ A
Sbjct: 1578 EIWDQGSDDWNMKPRRPLNEREQQTWDSIKMSLPRIHNNRGMCKPTWNPSDSKKYTVASA 1637
Query: 182 KIVLSPPSNINPTDSSYK 200
K + S+I P +++++
Sbjct: 1638 KDIAFKESSI-PKETNWE 1654
BLAST of PI0016512 vs. NCBI nr
Match:
KAA0037436.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 188.7 bits (478), Expect = 4.8e-44
Identity = 91/195 (46.67%), Postives = 119/195 (61.03%), Query Frame = 0
Query: 2 PKEKRGLGITNIATTNTALLCKWLWRYHTESSAFWRKFIDTKYSKTQSGNLPLT-GRYSS 61
PK K GLGITN+ NTALLCKWLWR+ E + W + I KY G+ P T G+YSS
Sbjct: 490 PKCKGGLGITNVKVINTALLCKWLWRFQEEKDSLWVEIISAKYKGHHIGDFPPTIGKYSS 549
Query: 62 NNVPLRSIIKNLDWFNAHIDWKINNGDYLSFWHSNWSANGILARFIPRIFTLSNIQNGTI 121
P R IIK + WF H W+I +G+ LSFWHSNW A+G L+ PR++TLS QN TI
Sbjct: 550 MKAPWRQIIKEIGWFQNHSSWEIKDGENLSFWHSNWIASGSLSNTYPRLYTLSKAQNATI 609
Query: 122 KKVWNNNLMDWDIKPRRPLNDREQNLWNSTKVSLTIPSIDSCSDVPIWKANGNSTFSTCC 181
+++W+ N DW++ PRRPLNDRE LW + K L I +++ + IW N T++
Sbjct: 610 EELWDPNTNDWNLHPRRPLNDREIELWTNLKGILKILTLNGGKNNMIWTPNDKGTYTAAS 669
Query: 182 AKIVL---SPPSNIN 193
AK L P N+N
Sbjct: 670 AKRQLLSERPTPNLN 684
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7TIB8 | 5.5e-46 | 44.12 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7TR15 | 2.1e-45 | 44.12 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7US62 | 1.8e-44 | 44.44 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5D3CA17 | 1.8e-44 | 44.44 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7T5L3 | 2.3e-44 | 46.67 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
Match Name | E-value | Identity | Description | |
KAA0041397.1 | 1.1e-45 | 44.12 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0044556.1 | 4.3e-45 | 44.12 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
TYK08190.1 | 3.7e-44 | 44.44 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0057507.1 | 3.7e-44 | 44.44 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0037436.1 | 4.8e-44 | 46.67 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |