PI0016345 (gene) Melon (PI 482460) v1

Overview


Name	PI0016345
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	17 kDa phloem lectin
Location	chr08: 11789253 .. 11790250 (+)
RNA-Seq Expression	PI0016345
Synteny	PI0016345

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAATCAAACCACACAAATTCTATCATTTCCAAGAGCTTCCTCAATAACATGGGGTGATGACACTCGCTACTGGAGTTGGCAGCCCGTGGATTTATGCGGGTATAATCTTAAACCCAAATTTTGTTTATATATATATATATATATGTCATATCTCACTCTCATGTATTGCTTTTGTTTTGATTTATAAAAACATAAACTAATTATTAAAATTCTACCTGTATGAGTATCTCTTATGTTGTATTATACTATTATTATGACAATAAATAATATATGATCAGTTTTTTTATGTGATCCAACTCACCTTGATTTAATCCTTTATTAAATTGAAATTTTTTAAAATATTTATCATAATTAACCTTAAGATAAGAGAAAAAAAAAAAAAAAAAACTAAAAACCTGCTTTTACAACAATGGAAAAGAAAACATCACTCCTAGGAACCAAAGGATATGCTTCTTAATAGCAAAGGATGCTCTGGAAAAAATAAAAAAAGAGAAGTGTTGAAAACTATGTATAAAATAATATTTCCACCCAAGCAAGCTAACTCGATCATACCTGAATTGGTTAATAAATATATTTGTCATTGGATCAAATAAGTTAATTTCTTGATCTTCACCATGACATCAAAAACCTTGCAGCTACTCAATTGAAGAAGCCCAACTTATTGAAGTATCTTGGTTTGATGTTCGCTGGACCATGAATACATCTGATTTCAAACAAGATATTTGGTACAATGCAAGCATTGAAGTAATGTTGAGCAACCCCTCCGGATGGGGTCTTCCTTTGACCGTTGAACTCGTTATGCCAGATGGGAGCAAGGAAGAGTATGAGATAGTACTGGAAGGTAAGGAACAAGATGTGTGGTTCAAGATCCCGGTAGGTAAGTTCTTGTTAACTGATTCTAGTACTGCTGGACCGATTCAATTCATCATCTATCAACATGGAGGACATTGGAAGAGAGGGTTGAACATAAGAGCCCTTGTGATTGAAGCATAA

mRNA sequence

ATGGCAAATCAAACCACACAAATTCTATCATTTCCAAGAGCTTCCTCAATAACATGGGGTGATGACACTCGCTACTGGAGTTGGCAGCCCGTGGATTTATGCGGGTATAATCTTAAACCCAAATTTTGTAAGGAACAAGATGTGTGGTTCAAGATCCCGGTAGGTAAGTTCTTGTTAACTGATTCTAGTACTGCTGGACCGATTCAATTCATCATCTATCAACATGGAGGACATTGGAAGAGAGGGTTGAACATAAGAGCCCTTGTGATTGAAGCATAA

Coding sequence (CDS)

ATGGCAAATCAAACCACACAAATTCTATCATTTCCAAGAGCTTCCTCAATAACATGGGGTGATGACACTCGCTACTGGAGTTGGCAGCCCGTGGATTTATGCGGGTATAATCTTAAACCCAAATTTTGTAAGGAACAAGATGTGTGGTTCAAGATCCCGGTAGGTAAGTTCTTGTTAACTGATTCTAGTACTGCTGGACCGATTCAATTCATCATCTATCAACATGGAGGACATTGGAAGAGAGGGTTGAACATAAGAGCCCTTGTGATTGAAGCATAA

Protein sequence

MANQTTQILSFPRASSITWGDDTRYWSWQPVDLCGYNLKPKFCKEQDVWFKIPVGKFLLTDSSTAGPIQFIIYQHGGHWKRGLNIRALVIEA

Homology

[Close]

BLAST of PI0016345 vs. ExPASy Swiss-Prot
Match: P0DSP5 (Lectin OS=Coccinia grandis OX=387127 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.2e-15
Identity = 43/150 (28.67%), Postives = 61/150 (40.67%), Query Frame = 0


Query: 5   TTQILSFPRASSITWGDDTRYWSWQPVDLCGYNLK------------------------- 64
           +T  L FPRA+++TW DDTRYWSW PVD CGY L+                         
Sbjct: 8   STHFLLFPRAATLTWSDDTRYWSWNPVDFCGYQLEEAQLSRVSWFDCRWTVNTTDLKTNV 67

Query: 65  ---------------------------PKFCKE----------QDVWFKIPVGKFLLTDS 93
                                      P   K+          +DVWFK+ +G  +++DS
Sbjct: 68  WYNVFLKVQMGSGASGWNTPLNLELEMPNGSKQASQVVLNDRPRDVWFKLQMGNLMVSDS 127

[Close]

BLAST of PI0016345 vs. ExPASy TrEMBL
Match: A0A0A0L3U0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G502330 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.7e-24
Identity = 53/92 (57.61%), Postives = 66/92 (71.74%), Query Frame = 0


Query: 1  MANQTTQILSFPRASSITWGDDTRYWSWQPVDLCGYNLKPKFCKEQDVWFKIPVGKFLLT 60
          MA  +T  L+FPRAS+ITWGDDTRYWSW  VD C         ++ +VW KIP+GKF+L 
Sbjct: 1  MAGYSTHYLAFPRASTITWGDDTRYWSWATVDFCS--------RQPNVWLKIPIGKFILR 60

Query: 61 DSSTAGPIQFIIYQHGGHWKRGLNIRALVIEA 93
           S T+G I+F +Y H G+WKRGLNIRAL I+A
Sbjct: 61 GSLTSGTIRFGLYNHEGNWKRGLNIRALAIQA 84

[Close]

BLAST of PI0016345 vs. ExPASy TrEMBL
Match: A0A1S3CE66 (uncharacterized protein PHLOEM PROTEIN 2-LIKE A4-like OS=Cucumis melo OX=3656 GN=LOC103499442 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.4e-20
Identity = 55/154 (35.71%), Postives = 73/154 (47.40%), Query Frame = 0


Query: 1   MANQTTQILSFPRASSITWGDDTRYWSWQPVDLCGYNLKPKFC----------------- 60
           MA Q+T  +++PRA+SITW DDTRYWSW PVD CGY ++                     
Sbjct: 1   MAGQSTHYVAYPRAASITWSDDTRYWSWAPVDFCGYPIEEARLLQVSWLDCRWTMDSSSF 60

Query: 61  ---------------------------------------------KEQDVWFKIPVGKFL 93
                                                        K+ +VWFKIP+GKF+
Sbjct: 61  KQDVWYNASVDVMMTNTASGWNIPLNIEIDMPDGSKQESQIVLAGKQPNVWFKIPLGKFI 120

[Close]

BLAST of PI0016345 vs. ExPASy TrEMBL
Match: A0A1S3CQ49 (uncharacterized protein PHLOEM PROTEIN 2-LIKE A4-like OS=Cucumis melo OX=3656 GN=LOC103503411 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.1e-20
Identity = 54/154 (35.06%), Postives = 73/154 (47.40%), Query Frame = 0


Query: 1   MANQTTQILSFPRASSITWGDDTRYWSWQPVDLCGYNLKPKFC----------------- 60
           MA Q+T  +++PRA+SITW DDTRYWSW P+D CGY ++                     
Sbjct: 1   MAGQSTHYVAYPRAASITWSDDTRYWSWAPMDFCGYPIEEARLLQVSWLDCRWSMDSSSF 60

Query: 61  ---------------------------------------------KEQDVWFKIPVGKFL 93
                                                        K+ +VWFKIP+GKF+
Sbjct: 61  KQDLWYNASIEVMMANTASGWDIPLNLEIDMPDGSKQESQIVLAGKQPNVWFKIPLGKFI 120

[Close]

BLAST of PI0016345 vs. ExPASy TrEMBL
Match: Q8LK70 (17 kDa phloem lectin OS=Cucumis sativus OX=3659 GN=Lec17-1 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 6.9e-20
Identity = 56/154 (36.36%), Postives = 71/154 (46.10%), Query Frame = 0


Query: 1   MANQTTQILSFPRASSITWGDDTRYWSWQPVDLCGYNLKPKFC----------------- 60
           MA Q+T  L+FPRAS+ITWGDDTRYWSW  VD C Y ++                     
Sbjct: 1   MAGQSTHYLAFPRASTITWGDDTRYWSWATVDFCSYAIEEARLLQVSWLDCRWSMDASDF 60

Query: 61  ---------------------------------------------KEQDVWFKIPVGKFL 93
                                                        ++ +VWFKIP+GKF+
Sbjct: 61  KQDIWYNASVEVMLTSNASGWNVPLHLEIELPDGSTQKSQIVLAGRQPNVWFKIPIGKFI 120

[Close]

BLAST of PI0016345 vs. ExPASy TrEMBL
Match: A0A0A0KYP0 (Phloem lectin OS=Cucumis sativus OX=3659 GN=Csa_4G501830 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 6.9e-20
Identity = 58/154 (37.66%), Postives = 72/154 (46.75%), Query Frame = 0


Query: 1   MANQTTQILSFPRASSITWGDDTRYWSWQPVDLCGYNLK--------------------- 60
           MA Q+T  L+FPRAS+ITWGDDTRYWSW  VD C Y ++                     
Sbjct: 1   MAGQSTHYLAFPRASTITWGDDTRYWSWATVDFCSYAIEEARLLQVSWLDCRWSMDASDF 60

Query: 61  -------------------------------PKFCKEQ----------DVWFKIPVGKFL 93
                                          P   K++          +VWFKIP+GKF+
Sbjct: 61  KQDIWYNASVEVMLTSNASGWNVPLHLEIELPDGSKQESQIVLAGRQPNVWFKIPIGKFI 120

[Close]

BLAST of PI0016345 vs. NCBI nr
Match: XP_008460673.1 (PREDICTED: uncharacterized protein PHLOEM PROTEIN 2-LIKE A4-like [Cucumis melo])

HSP 1 Score: 108.6 bits (270), Expect = 2.9e-20
Identity = 55/154 (35.71%), Postives = 73/154 (47.40%), Query Frame = 0


Query: 1   MANQTTQILSFPRASSITWGDDTRYWSWQPVDLCGYNLKPKFC----------------- 60
           MA Q+T  +++PRA+SITW DDTRYWSW PVD CGY ++                     
Sbjct: 1   MAGQSTHYVAYPRAASITWSDDTRYWSWAPVDFCGYPIEEARLLQVSWLDCRWTMDSSSF 60

Query: 61  ---------------------------------------------KEQDVWFKIPVGKFL 93
                                                        K+ +VWFKIP+GKF+
Sbjct: 61  KQDVWYNASVDVMMTNTASGWNIPLNIEIDMPDGSKQESQIVLAGKQPNVWFKIPLGKFI 120

[Close]

BLAST of PI0016345 vs. NCBI nr
Match: KAE8649723.1 (hypothetical protein Csa_012122, partial [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 6.4e-20
Identity = 58/154 (37.66%), Postives = 73/154 (47.40%), Query Frame = 0


Query: 1   MANQTTQILSFPRASSITWGDDTRYWSWQPVDLCGYNLK--------------------- 60
           MA Q+T  L+FPRAS+ITWGDDTRYWSW  VD C Y ++                     
Sbjct: 26  MAGQSTHYLAFPRASTITWGDDTRYWSWATVDFCSYAIEEARLLQVSWFDCRWSMDASDF 85

Query: 61  -------------------------------PKFCKEQ----------DVWFKIPVGKFL 93
                                          P   K++          +VWFKIP+GKF+
Sbjct: 86  KQDIWYNASVEVMMTTNTSGWHVPLHLEIELPDGSKQESQIVLAGRQPNVWFKIPIGKFI 145

[Close]

BLAST of PI0016345 vs. NCBI nr
Match: XP_031739683.1 (lectin-like [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 6.4e-20
Identity = 58/154 (37.66%), Postives = 73/154 (47.40%), Query Frame = 0


Query: 1   MANQTTQILSFPRASSITWGDDTRYWSWQPVDLCGYNLK--------------------- 60
           MA Q+T  L+FPRAS+ITWGDDTRYWSW  VD C Y ++                     
Sbjct: 1   MAGQSTHYLAFPRASTITWGDDTRYWSWATVDFCSYAIEEARLLQVSWFDCRWSMDASDF 60

Query: 61  -------------------------------PKFCKEQ----------DVWFKIPVGKFL 93
                                          P   K++          +VWFKIP+GKF+
Sbjct: 61  KQDIWYNASVEVMMTTNTSGWHVPLHLEIELPDGSKQESQIVLAGRQPNVWFKIPIGKFI 120

[Close]

BLAST of PI0016345 vs. NCBI nr
Match: XP_008465821.1 (PREDICTED: uncharacterized protein PHLOEM PROTEIN 2-LIKE A4-like [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 8.4e-20
Identity = 54/154 (35.06%), Postives = 73/154 (47.40%), Query Frame = 0


Query: 1   MANQTTQILSFPRASSITWGDDTRYWSWQPVDLCGYNLKPKFC----------------- 60
           MA Q+T  +++PRA+SITW DDTRYWSW P+D CGY ++                     
Sbjct: 1   MAGQSTHYVAYPRAASITWSDDTRYWSWAPMDFCGYPIEEARLLQVSWLDCRWSMDSSSF 60

Query: 61  ---------------------------------------------KEQDVWFKIPVGKFL 93
                                                        K+ +VWFKIP+GKF+
Sbjct: 61  KQDLWYNASIEVMMANTASGWDIPLNLEIDMPDGSKQESQIVLAGKQPNVWFKIPLGKFI 120

[Close]

BLAST of PI0016345 vs. NCBI nr
Match: XP_031740319.1 (lectin [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 1.4e-19
Identity = 58/154 (37.66%), Postives = 72/154 (46.75%), Query Frame = 0


Query: 1   MANQTTQILSFPRASSITWGDDTRYWSWQPVDLCGYNLK--------------------- 60
           MA Q+T  L+FPRAS+ITWGDDTRYWSW  VD C Y ++                     
Sbjct: 1   MAGQSTHYLAFPRASTITWGDDTRYWSWATVDFCSYAIEEARLLQVSWLDCRWSMDASDF 60

Query: 61  -------------------------------PKFCKEQ----------DVWFKIPVGKFL 93
                                          P   K++          +VWFKIP+GKF+
Sbjct: 61  KQDIWYNASVEVMLTSNASGWNVPLHLEIELPDGSKQESQIVLAGRQPNVWFKIPIGKFI 120

The following BLAST results are available for this feature:

BLAST of PI0016345 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0DSP5	2.2e-15	28.67	Lectin OS=Coccinia grandis OX=387127 PE=1 SV=1	[more]

BLAST of PI0016345 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3U0	2.7e-24	57.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G502330 PE=4 SV=1	[more]
A0A1S3CE66	1.4e-20	35.71	uncharacterized protein PHLOEM PROTEIN 2-LIKE A4-like OS=Cucumis melo OX=3656 GN...	[more]
A0A1S3CQ49	4.1e-20	35.06	uncharacterized protein PHLOEM PROTEIN 2-LIKE A4-like OS=Cucumis melo OX=3656 GN...	[more]
Q8LK70	6.9e-20	36.36	17 kDa phloem lectin OS=Cucumis sativus OX=3659 GN=Lec17-1 PE=4 SV=1	[more]
A0A0A0KYP0	6.9e-20	37.66	Phloem lectin OS=Cucumis sativus OX=3659 GN=Csa_4G501830 PE=4 SV=1	[more]

BLAST of PI0016345 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460673.1	2.9e-20	35.71	PREDICTED: uncharacterized protein PHLOEM PROTEIN 2-LIKE A4-like [Cucumis melo]	[more]
KAE8649723.1	6.4e-20	37.66	hypothetical protein Csa_012122, partial [Cucumis sativus]	[more]
XP_031739683.1	6.4e-20	37.66	lectin-like [Cucumis sativus]	[more]
XP_008465821.1	8.4e-20	35.06	PREDICTED: uncharacterized protein PHLOEM PROTEIN 2-LIKE A4-like [Cucumis melo]	[more]
XP_031740319.1	1.4e-19	37.66	lectin [Cucumis sativus]	[more]

BLAST of PI0016345 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0016345.1	PI0016345.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0030246	carbohydrate binding