PI0016344 (gene) Melon (PI 482460) v1

Overview
NamePI0016344
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr04: 7736391 .. 7739193 (-)
RNA-Seq ExpressionPI0016344
SyntenyPI0016344
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATTACTTCCACCGTCAAACAACTTGTACGGATGGGATTACTTCCACCATCAATCAACTTGTACGGATGAGATTACTTCCACCATCAAACAACTAAGATAGATTTCTTCCCTCTTTTACAGTTCCGTCTTCTTTTAGTCTATAGTTATGTTATTTAGAAAAGGGCGTAGTGGGAAGCAATCAAAATATCGATTTCAATAAGCTAATATCGATTTCAATAAGCTAATTTTCTTCCTCTCGTGCCTTTTAACTTTTGATTTCAAGTTATTTCAACAAAACAAATCCATAGGCCGAAGAAGCAATGGAAGTATAGTTTAAAGCATATAGTTTTGTGCTTTGATGATTGAAATAAACACGATCGTTCTTCATTCATATGATTTATGCTTTTGATATTTAGAACATATTTCAATGTTTTTTATATTGCTGGAATATTCATTCATACGTCTCTCATGCGGAAGGAACAAACATGTATTGCCGGAAGAATTCATGTAGATTCCTATTGGAAATAAACAATGACAAGTGAGAGTTGGGCTGTGGGTTGAGTTTGGCATAAGAAACCTGTAGCAAATAGAAGTTGCATAAAAAATTTCTAATTAGCCAAAACATACACTAATTTTTAATCTGTGTATGGAATATTTCCAAGGAAAAGTTGAGTTGAGTGTGGATCTTGATCACTTCTTGAGCAATGAACACTTTCTTACGTTTCAGGTTTCTTTAGCTTTCATCCGTTGTATTCATTTCCTCATCTTTCTGACTGCCTCATTTATGTCAAAATGTAAAATGTAAAACACTTCATTAACTTTATTTGTGTTTTTTTTTTGGCAGGGATGACTTCAAAAATTCTGGAAAAATAAAATTTAAACACTTTTACTAAACAAACCTTTCTAACATTTTGCTGTCACTAAACTTGTTTATTGATTACTTTTCCTTTTCTCGTTTCGCTCTTGCTCTCTGCCCTTAGTTTGTCAGTTGCCTAAAAAAGTTCTGCATATTGTCGTTGTCACCAGGTGTCATTTGTTGCGGGAGAAAGAAGAAACAACCCTTCTCCCTCTTGCCACTCTCGTTGTTGTAGGCCAAATACAAGGAAGAGAACATTATTGTTGCTATCGTTGGAGTTTACACGGGAGTAAAAGGAAGAAAAGAGAGTAATAGAACAAGAGTTGAGAGAAGGATTATATATATATATATACATATAAATGTTTGAAAAGTGTTATAGAACTTTTATTTTGAAAATTAGGCCATATAATATTTTGGTCAATTTTTTTTTAGGTTAATCTATCTCATCCCTTTATTTATTGCACGTAAGATTTTCTATCATGAGCCGAAACCTTTGAAGATTTAACTGAGTTAATGATATGTATATATTTCTTTAGTGTAACGTGCATTTTTTTTATGGAGGTGTTGTTTGAATGATTAATATGTATCTAAATAGTACATGAACATGTTAGTTATAAATTAATACTGAAATAGAGTTATACAACAATAAGATAATTAAACCTAATTGACCTTAGGCATGGGTCATTCTTTAATAAAATCTAAAGGGTTATGGGGCTTAATTTATCTAGATTTCAATGTTCGATTGACTTTCATACAAGCTTGATTACTTGGACTCTTAAAACATATTTGAAAACATATCAAAATAGAAAGTGAACTTGATTTACGGTGTAAATATAAAATGAGAAATGTCTTGGATGCATTACTGAGAGCAATTACATTGGAGACATAAATACAACGGAATTATTTGATGTTCATATAGGCTATATAAGTCATAGAGGGATAAACTTACTCTCAATTACCACATTGAAATCTAGACATTAAATTGAAATAAAACATTTCAAAACCTAAAAACCAAATAGACTTTGTTTCAGACAGCCACACAGTGATAAAAAAACCTAACAACTGCTGGAATAGACATAAAATCCTATCCTTAAAAAAAGAAGGTTTTGGATAGATGATTTTTTTTGGTCTCCAATTAGTACCAAAATCCACATTTGCTCAAATCAAGATCAAAGCAAACTAAAGTTTATTCGAGTTGTTAGCCCCTTATGTACTTCCTTGGTTACAGAGTTAGATGATGTTGACGTTGTTACCTAAACAACACGTCAACTAATCTTACAAAGATTTAAAAAAGGGGTGAGATAAAATCAAAAGATTTGTGCTTGAATAGGAAGCCATCTCTTTCCCCTTTTGTCAAAGTTTGAGCAATCTCACTACTCACTGCCTTAAACAGCTCCATGTGTCTTTTTTGGATTTTGATTGTGTTTGGAAGTTGTTAATTATAAGTTGGACCTTTTTGCCCTCCTTTAATATAGGGTTATTTATTTATTTACATTAAAAGGACTATAAAATAAAATCTGAAAGGAAAACTTGTGGTCAAATCGGCTTTATTCACACGCTATGAGTCAACGTTTCTTCAATCTTCAGCTTCCAGCTTTCATCTTTTACCTTTTACCTTCGCCCAAATTCTCTTCTCCCTCTCTTCTCCCTCTCTTCTCCAATGGCTTCCTCTAATCCTAATCTCTCAATTCCTTCAATGGATTTCCTCTGAAACTTCCCAACCCACGTTCTTTCCTCCAACAACACACAACTTAGACCATGGCATTGCCATTGCATTTGGCGTTCTGGATCGCCGATATGGTTTGGGGTGCCTTTAGCGGCTGTATTTCTTCTTGTTTGGCCTTTGCCGACGAAGTCGCCGGCTCCATCAGAACTGGCGATATTGGCGCTTTTCACATTGGCTGACCGGGTTTTCTTCGATTTTCATCAATTCTTAACTCTCTGGTTTGTATTGTGGCCTTGA

mRNA sequence

ATGAGATTACTTCCACCGTCAAACAACTTGTACGGATGGGATTACTTCCACCATCAATCAACTTCAATCTCACTACTCACTGCCTTAAACAGCTCCATGTGTCTTTTTTGGATTTTGATTGTGTTTGGAAGTTCGGCTGTATTTCTTCTTGTTTGGCCTTTGCCGACGAAGTCGCCGGCTCCATCAGAACTGGCGATATTGGCGCTTTTCACATTGGCTGACCGGGTTTTCTTCGATTTTCATCAATTCTTAACTCTCTGGTTTGTATTGTGGCCTTGA

Coding sequence (CDS)

ATGAGATTACTTCCACCGTCAAACAACTTGTACGGATGGGATTACTTCCACCATCAATCAACTTCAATCTCACTACTCACTGCCTTAAACAGCTCCATGTGTCTTTTTTGGATTTTGATTGTGTTTGGAAGTTCGGCTGTATTTCTTCTTGTTTGGCCTTTGCCGACGAAGTCGCCGGCTCCATCAGAACTGGCGATATTGGCGCTTTTCACATTGGCTGACCGGGTTTTCTTCGATTTTCATCAATTCTTAACTCTCTGGTTTGTATTGTGGCCTTGA

Protein sequence

MRLLPPSNNLYGWDYFHHQSTSISLLTALNSSMCLFWILIVFGSSAVFLLVWPLPTKSPAPSELAILALFTLADRVFFDFHQFLTLWFVLWP
Homology
[Close]
BLAST of PI0016344 vs. ExPASy TrEMBL
Match: A0A0A0LFJ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822140 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.8e-12
Identity = 53/96 (55.21%), Postives = 59/96 (61.46%), Query Frame = 0 

Query: 1  MRLLPPS-NNLYGWDYFHHQST-----SISLLTALNSSMCLFWILIVFGSSAVFLLVWPL 60
          MRLLPPS   LY      +  T     SISL +  ++     W+     S+AVFLLVWPL
Sbjct: 1  MRLLPPSTTKLYLCPSLQNSRTEELHGSISLCSMWSTESERLWLT---KSAAVFLLVWPL 60

Query: 61 PTKSPAPSELAILALFTLADRVFFDFHQFLTLWFVL 91
          PTKSPAP ELA LALFTLADR    FHQFLTLW  L
Sbjct: 61 PTKSPAPPELATLALFTLADRRLLQFHQFLTLWSAL 93

[Close]
BLAST of PI0016344 vs. NCBI nr
Match: KGN59462.1 (hypothetical protein Csa_000873 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 3.8e-12
Identity = 53/96 (55.21%), Postives = 59/96 (61.46%), Query Frame = 0 

Query: 1  MRLLPPS-NNLYGWDYFHHQST-----SISLLTALNSSMCLFWILIVFGSSAVFLLVWPL 60
          MRLLPPS   LY      +  T     SISL +  ++     W+     S+AVFLLVWPL
Sbjct: 1  MRLLPPSTTKLYLCPSLQNSRTEELHGSISLCSMWSTESERLWLT---KSAAVFLLVWPL 60

Query: 61 PTKSPAPSELAILALFTLADRVFFDFHQFLTLWFVL 91
          PTKSPAP ELA LALFTLADR    FHQFLTLW  L
Sbjct: 61 PTKSPAPPELATLALFTLADRRLLQFHQFLTLWSAL 93

The following BLAST results are available for this feature:
BLAST of PI0016344 vs.
Match NameE-valueIdentityDescription
BLAST of PI0016344 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFJ11.8e-1255.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822140 PE=4 SV=1[more]
BLAST of PI0016344 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59462.13.8e-1255.21hypothetical protein Csa_000873 [Cucumis sativus][more]
BLAST of PI0016344 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0016344.1PI0016344.1mRNA