PI0016317 (gene) Melon (PI 482460) v1

Overview
NamePI0016317
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
Descriptionglycine-rich RNA-binding protein 4, mitochondrial
Locationchr12: 21560059 .. 21560779 (+)
RNA-Seq ExpressionPI0016317
SyntenyPI0016317
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATACAATGGTTGGATCATTGGTAGCAAAACGTGGTATCGACAAAATTCCCAAAAAAGGAGAGCAGAATGAAGTTAGAAAAGAAGCCAACGATCCCCCAAAGAAAACAAGGACCAAAAGCATGGTAAGACAACTTTGTGAATGTCGTTTAAACAATATGAGTTTCAATTGATTAAATGAATGTGTAGGTTGCAAAAAGGACACCAGAAAAGAAGAAAAAGCAAAGGAAAGAAGGTAACATTTCATAACAAATGAAAAAAAAAATTATATCATAAGTGGCTAGTAACTAATATTTCTAAATTATAGGTATCAAGTGTGAAAGACAAAGAAAAGGACAAGAAGTCAACAAAGCAAAAATGCAAGGCACCAATAATACAAGAGAGCAAAGAGGTATCATTATTACAATACACAATATTTGACATTTGTTTTATAATATCATTTACTTTTGGTCAGTATGTAATTAAAAAATACATTGTATTTGATATTTCTAACTACATATTAAATACCTAGTTGTTTGAAACCTCGTGTGTTGAACTTTAAAGTACACATGTTGGATATATATTGACAAACTATGTTTAGTACAATACAGAGTATTTGACATTTGTTTGGCAGTGGTTCTTTTAAAGGATATCTTTAGAGGATATCTAAGAACCTCTGGACCCCCAAAAGAGCGTCCTAATGTGGAGCAAGAAGATGTGGCAGATTGTTGGTATTGA

mRNA sequence

ATGGAAGATACAATGGTTGGATCATTGGTAGCAAAACGTGGTATCGACAAAATTCCCAAAAAAGGAGAGCAGAATGAAGTTAGAAAAGAAGCCAACGATCCCCCAAAGAAAACAAGGACCAAAAGCATGGTTGCAAAAAGGACACCAGAAAAGAAGAAAAAGCAAAGGAAAGAAGGTATCAAGTGTGAAAGACAAAGAAAAGGACAAGAAGTCAACAAAGCAAAAATGCAAGGCACCAATAATACAAGAGAGCAAAGAGTGGTTCTTTTAAAGGATATCTTTAGAGGATATCTAAGAACCTCTGGACCCCCAAAAGAGCGTCCTAATGTGGAGCAAGAAGATGTGGCAGATTGTTGGTATTGA

Coding sequence (CDS)

ATGGAAGATACAATGGTTGGATCATTGGTAGCAAAACGTGGTATCGACAAAATTCCCAAAAAAGGAGAGCAGAATGAAGTTAGAAAAGAAGCCAACGATCCCCCAAAGAAAACAAGGACCAAAAGCATGGTTGCAAAAAGGACACCAGAAAAGAAGAAAAAGCAAAGGAAAGAAGGTATCAAGTGTGAAAGACAAAGAAAAGGACAAGAAGTCAACAAAGCAAAAATGCAAGGCACCAATAATACAAGAGAGCAAAGAGTGGTTCTTTTAAAGGATATCTTTAGAGGATATCTAAGAACCTCTGGACCCCCAAAAGAGCGTCCTAATGTGGAGCAAGAAGATGTGGCAGATTGTTGGTATTGA

Protein sequence

MEDTMVGSLVAKRGIDKIPKKGEQNEVRKEANDPPKKTRTKSMVAKRTPEKKKKQRKEGIKCERQRKGQEVNKAKMQGTNNTREQRVVLLKDIFRGYLRTSGPPKERPNVEQEDVADCWY
Homology
[Close]
BLAST of PI0016317 vs. ExPASy TrEMBL
Match: A0A5A7U963 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G0010070 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.3e-06
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 0 

Query: 94  FRGYLRTSGPPKERPNVEQEDVADCWY 121
           F GY RTSGPPKERPNVEQED+ADCWY
Sbjct: 57  FGGYPRTSGPPKERPNVEQEDIADCWY 83

[Close]
BLAST of PI0016317 vs. ExPASy TrEMBL
Match: A0A1S3AYG0 (glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103484270 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.3e-06
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 0 

Query: 94  FRGYLRTSGPPKERPNVEQEDVADCWY 121
           F GY RTSGPPKERPNVEQED+ADCWY
Sbjct: 128 FGGYPRTSGPPKERPNVEQEDIADCWY 154

[Close]
BLAST of PI0016317 vs. ExPASy TrEMBL
Match: A0A6J1CXC0 (glycine-rich RNA-binding protein 4, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111015686 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-04
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 0 

Query: 92  DIFRGYLRTSGPPKERPNVEQEDVADCWY 121
           D F GY RTSGPPKERP +E E+VADCWY
Sbjct: 126 DSFGGYPRTSGPPKERPKLELEEVADCWY 154

[Close]
BLAST of PI0016317 vs. ExPASy TrEMBL
Match: A0A067GF61 (RRM domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g031755mg PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 7.0e-04
Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = 0 

Query: 91  KDIFRGYLRTSGPPKERPNVEQEDVADCWY 121
           KD F GY RTSGPPK++P  EQ++VADCWY
Sbjct: 124 KDRFGGYPRTSGPPKQQPLSEQDEVADCWY 153

[Close]
BLAST of PI0016317 vs. ExPASy TrEMBL
Match: V4TN06 (RRM domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10016768mg PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 7.0e-04
Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = 0 

Query: 91  KDIFRGYLRTSGPPKERPNVEQEDVADCWY 121
           KD F GY RTSGPPK++P  EQ++VADCWY
Sbjct: 171 KDRFGGYPRTSGPPKQQPLSEQDEVADCWY 200

[Close]
BLAST of PI0016317 vs. NCBI nr
Match: KAA0052443.1 (glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa] >TYK13379.1 glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 6.9e-06
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 0 

Query: 94  FRGYLRTSGPPKERPNVEQEDVADCWY 121
           F GY RTSGPPKERPNVEQED+ADCWY
Sbjct: 57  FGGYPRTSGPPKERPNVEQEDIADCWY 83

[Close]
BLAST of PI0016317 vs. NCBI nr
Match: XP_008439484.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo])

HSP 1 Score: 61.2 bits (147), Expect = 6.9e-06
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 0 

Query: 94  FRGYLRTSGPPKERPNVEQEDVADCWY 121
           F GY RTSGPPKERPNVEQED+ADCWY
Sbjct: 128 FGGYPRTSGPPKERPNVEQEDIADCWY 154

[Close]
BLAST of PI0016317 vs. NCBI nr
Match: XP_022146475.1 (glycine-rich RNA-binding protein 4, mitochondrial [Momordica charantia])

HSP 1 Score: 55.8 bits (133), Expect = 2.9e-04
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 0 

Query: 92  DIFRGYLRTSGPPKERPNVEQEDVADCWY 121
           D F GY RTSGPPKERP +E E+VADCWY
Sbjct: 126 DSFGGYPRTSGPPKERPKLELEEVADCWY 154

The following BLAST results are available for this feature:
BLAST of PI0016317 vs.
Match NameE-valueIdentityDescription
BLAST of PI0016317 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U9633.3e-0688.89Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A1S3AYG03.3e-0688.89glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC... [more]
A0A6J1CXC01.4e-0475.86glycine-rich RNA-binding protein 4, mitochondrial OS=Momordica charantia OX=3673... [more]
A0A067GF617.0e-0470.00RRM domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g031755mg PE=... [more]
V4TN067.0e-0470.00RRM domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10016768mg... [more]
BLAST of PI0016317 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0052443.16.9e-0688.89glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa] >TYK13379.1 glycin... [more]
XP_008439484.16.9e-0688.89PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo][more]
XP_022146475.12.9e-0475.86glycine-rich RNA-binding protein 4, mitochondrial [Momordica charantia][more]
BLAST of PI0016317 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..120

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0016317.1PI0016317.1mRNA