PI0016297 (gene) Melon (PI 482460) v1

Overview
NamePI0016297
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr04: 29772539 .. 29772805 (+)
RNA-Seq ExpressionPI0016297
SyntenyPI0016297
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAGTTCGGTCAAATACGTATTGGATACCGATTATTCAACTCAAATGAAGTATTTGTGCTTTCTCCACCCTTTTTATTACCACTTTTCATTACTTAAACGTCCTTCCTCTCTTTCCCGCCCTTTTCTAAGAGCAGAGTTTTTCTCTTTGTGGATCTCAAAGGATGGTAGGGACGAGGAGGTAGCTCAGCAGTTTTACGCCATCAAGCTTATGGATTATGATCAATGGGAACGACAAGATTCTCATCCCAAACATGAAAGGTAA

mRNA sequence

ATGTCAAGTTCGGTCAAATACGTATTGGATACCGATTATTCAACTCAAATGAAGTATTTGTGCTTTCTCCACCCTTTTTATTACCACTTTTCATTACTTAAACGTCCTTCCTCTCTTTCCCGCCCTTTTCTAAGAGCAGAGTTTTTCTCTTTGTGGATCTCAAAGGATGGTAGGGACGAGGAGGTAGCTCAGCAGTTTTACGCCATCAAGCTTATGGATTATGATCAATGGGAACGACAAGATTCTCATCCCAAACATGAAAGGTAA

Coding sequence (CDS)

ATGTCAAGTTCGGTCAAATACGTATTGGATACCGATTATTCAACTCAAATGAAGTATTTGTGCTTTCTCCACCCTTTTTATTACCACTTTTCATTACTTAAACGTCCTTCCTCTCTTTCCCGCCCTTTTCTAAGAGCAGAGTTTTTCTCTTTGTGGATCTCAAAGGATGGTAGGGACGAGGAGGTAGCTCAGCAGTTTTACGCCATCAAGCTTATGGATTATGATCAATGGGAACGACAAGATTCTCATCCCAAACATGAAAGGTAA

Protein sequence

MSSSVKYVLDTDYSTQMKYLCFLHPFYYHFSLLKRPSSLSRPFLRAEFFSLWISKDGRDEEVAQQFYAIKLMDYDQWERQDSHPKHER
Homology
BLAST of PI0016297 vs. ExPASy TrEMBL
Match: A0A0A0LDL6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G873790 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.9e-20
Identity = 50/58 (86.21%), Postives = 54/58 (93.10%), Query Frame = 0

Query: 31 SLLKRPSSLSRPFLRAEFFSLWISKDGRDEEVAQQFYAIKLMDYDQWERQDSHPKHER 89
          S+LKRPSSLSRPF+RAEFFSLWISKDGRD+EVAQQF+ IKLMDY QWE QDSHPK ER
Sbjct: 30 SILKRPSSLSRPFVRAEFFSLWISKDGRDQEVAQQFHVIKLMDYHQWEPQDSHPKRER 87

BLAST of PI0016297 vs. ExPASy TrEMBL
Match: A0A5A7V7W6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G001270 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.4e-06
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0

Query: 57 GRDEEVAQQFYAIKLMDYDQWERQDSHPKHER 89
          G+DEEVAQQF+AI LMDY QWERQDSHPK ER
Sbjct: 3  GKDEEVAQQFHAIMLMDYHQWERQDSHPKRER 34

BLAST of PI0016297 vs. NCBI nr
Match: KAE8651348.1 (hypothetical protein Csa_002480 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 3.0e-19
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 0

Query: 31 SLLKRPSSLSRPFLRAEFFSLWISKDGRDEEVAQQFYAIKLMDYDQWERQDSHPKHE 88
          S+LKRPSSLSRPF+RAEFFSLWISKDGRD+EVAQQF+ IKLMDY QWE QDSHPK E
Sbjct: 30 SILKRPSSLSRPFVRAEFFSLWISKDGRDQEVAQQFHVIKLMDYHQWEPQDSHPKRE 86

BLAST of PI0016297 vs. NCBI nr
Match: KAA0063304.1 (hypothetical protein E6C27_scaffold205G001270 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-05
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0

Query: 57 GRDEEVAQQFYAIKLMDYDQWERQDSHPKHER 89
          G+DEEVAQQF+AI LMDY QWERQDSHPK ER
Sbjct: 3  GKDEEVAQQFHAIMLMDYHQWERQDSHPKRER 34

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LDL63.9e-2086.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G873790 PE=4 SV=1[more]
A0A5A7V7W65.4e-0684.38Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAE8651348.13.0e-1985.96hypothetical protein Csa_002480 [Cucumis sativus][more]
KAA0063304.11.1e-0584.38hypothetical protein E6C27_scaffold205G001270 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0016297.1PI0016297.1mRNA