PI0016283 (gene) Melon (PI 482460) v1

Overview


Name	PI0016283
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr06: 13109148 .. 13110102 (-)
RNA-Seq Expression	PI0016283
Synteny	PI0016283

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGGTTTCTTAGGTTAATCTTCAACAGTTGTCTTTCCTAACGGTAGCCTGTTGAAGCGTACCTCTGGGATCTGAAAATGGTAGGGTCACACTTACGGGATGAATTAAGTCAGTTAATAAATCCTTGACCAAACAACGGTAGCTAAGAACTATAGGAATAAGAGTTATTCTGGTATTAGTAATTAGCTGAGATTGTCTCAATTCAGGAGAGGAGTAGTTGATCACCCTTCGGTGACGGTTGCTCTAAACTTCTGAAGTATCGTTGCAAAAACTAAATCATTTGTTTGATTAGGGTTCTTTGATTGTTTGTTTTTGCTGAAATGATTGGATTATTTTGTGTAATGGGTTAAGACAAAGATAAATAATACGGTCAATTGTTTGTATTTTCAGCATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTTCGTTTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTTTTCTGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCTTAA

mRNA sequence

ATGGATAGGTTTCTTAGCATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTTCGTTTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATTGACGAGCAAAGTCAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCTTAA

Coding sequence (CDS)

ATGGATAGGTTTCTTAGCATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTTCGTTTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATTGACGAGCAAAGTCAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCTTAA

Protein sequence

MDRFLSMSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQQCGYEQDRVYHDYPP

Homology

[Close]

BLAST of PI0016283 vs. ExPASy TrEMBL
Match: A0A5D3D0D9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 4.3e-63
Identity = 124/154 (80.52%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 7   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYD 66
           MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 67  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 126
            WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQPSIQI+ EAIKYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 127 RMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQ 161
           RMKEGQSVREHVL M+V FNVAE N A+ DE+SQ
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQ 154

[Close]

BLAST of PI0016283 vs. ExPASy TrEMBL
Match: A0A5A7VA67 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00110 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 4.3e-63
Identity = 124/154 (80.52%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 7   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYD 66
           MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 67  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 126
            WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQPSIQI+ EAIKYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 127 RMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQ 161
           RMKEGQSVREHVL M+V FNVAE N A+ DE+SQ
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQ 154

[Close]

BLAST of PI0016283 vs. ExPASy TrEMBL
Match: A0A5D3BM47 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00040 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 4.5e-60
Identity = 122/154 (79.22%), Postives = 137/154 (88.96%), Query Frame = 0


Query: 7   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYD 66
           MSSSIIALLK E LTG+NYA WKS LNMILVI DLRF+LMEECPP P +NAS+++RDAY+
Sbjct: 1   MSSSIIALLKKEHLTGENYAMWKSKLNMILVIVDLRFILMEECPPFPTQNASESIRDAYN 60

Query: 67  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 126
           R TKAN+KA +YILASMSD+LSKKHE MVTARQIMDS +E+F QPSIQI+ EAIKYVYNA
Sbjct: 61  RRTKANDKACLYILASMSDILSKKHEIMVTARQIMDSHKELFRQPSIQIKQEAIKYVYNA 120

Query: 127 RMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQ 161
            MKEGQSVREH LDM+V FNVAE NGAVIDE+SQ
Sbjct: 121 HMKEGQSVREHCLDMIVNFNVAEMNGAVIDEKSQ 154

[Close]

BLAST of PI0016283 vs. ExPASy TrEMBL
Match: A0A5D3DQJ2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G00330 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 4.2e-58
Identity = 116/154 (75.32%), Postives = 132/154 (85.71%), Query Frame = 0


Query: 7   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYD 66
           MSSSIIALLK ++LTG NY TWKS LNMILVI DLR +LME+CPP P +NASQ+V+DAYD
Sbjct: 1   MSSSIIALLKKDQLTGKNYVTWKSKLNMILVIADLRVILMEDCPPFPSQNASQSVKDAYD 60

Query: 67  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 126
            WTK N+KAR+YIL SM D+LSKKHE MVTARQIMDS++EMFGQPSIQI+ EAIKYVYN 
Sbjct: 61  CWTKTNDKARLYILVSMFDILSKKHEIMVTARQIMDSIREMFGQPSIQIKQEAIKYVYNV 120

Query: 127 RMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQ 161
            MKE QSVREHVLDM+V FN+AE N  V DE+SQ
Sbjct: 121 CMKEDQSVREHVLDMIVNFNIAEMNRVVFDEKSQ 154

[Close]

BLAST of PI0016283 vs. ExPASy TrEMBL
Match: A0A6J1DWL0 (uncharacterized protein LOC111024734 OS=Momordica charantia OX=3673 GN=LOC111024734 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 7.1e-58
Identity = 113/154 (73.38%), Postives = 134/154 (87.01%), Query Frame = 0


Query: 7   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYD 66
           MS+SIIALL  +KL G+NY  WKSNLN ILVIDDLRFVL E+CP +PV NA+  VR+AYD
Sbjct: 1   MSASIIALLAAQKLNGENYRQWKSNLNTILVIDDLRFVLQEDCPQAPVSNATVAVRNAYD 60

Query: 67  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 126
           RW K+N+KA+VYILAS+SDVL+KKHE  VT ++IMDSLQ MFGQPS+Q RHEA+K+VYN+
Sbjct: 61  RWIKSNDKAKVYILASISDVLAKKHEDTVTTKEIMDSLQSMFGQPSLQARHEALKFVYNS 120

Query: 127 RMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQ 161
           RMKEG SVREHVL++MV FNVAE+NG VIDEQSQ
Sbjct: 121 RMKEGSSVREHVLNLMVHFNVAESNGIVIDEQSQ 154

[Close]

BLAST of PI0016283 vs. NCBI nr
Match: KAA0063887.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 250.8 bits (639), Expect = 8.9e-63
Identity = 124/154 (80.52%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 7   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYD 66
           MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 67  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 126
            WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQPSIQI+ EAIKYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 127 RMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQ 161
           RMKEGQSVREHVL M+V FNVAE N A+ DE+SQ
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQ 154

[Close]

BLAST of PI0016283 vs. NCBI nr
Match: TYK15919.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 250.8 bits (639), Expect = 8.9e-63
Identity = 124/154 (80.52%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 7   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYD 66
           MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 67  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 126
            WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQPSIQI+ EAIKYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 127 RMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQ 161
           RMKEGQSVREHVL M+V FNVAE N A+ DE+SQ
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQ 154

[Close]

BLAST of PI0016283 vs. NCBI nr
Match: TYK00843.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 240.7 bits (613), Expect = 9.2e-60
Identity = 122/154 (79.22%), Postives = 137/154 (88.96%), Query Frame = 0


Query: 7   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYD 66
           MSSSIIALLK E LTG+NYA WKS LNMILVI DLRF+LMEECPP P +NAS+++RDAY+
Sbjct: 1   MSSSIIALLKKEHLTGENYAMWKSKLNMILVIVDLRFILMEECPPFPTQNASESIRDAYN 60

Query: 67  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 126
           R TKAN+KA +YILASMSD+LSKKHE MVTARQIMDS +E+F QPSIQI+ EAIKYVYNA
Sbjct: 61  RRTKANDKACLYILASMSDILSKKHEIMVTARQIMDSHKELFRQPSIQIKQEAIKYVYNA 120

Query: 127 RMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQ 161
            MKEGQSVREH LDM+V FNVAE NGAVIDE+SQ
Sbjct: 121 HMKEGQSVREHCLDMIVNFNVAEMNGAVIDEKSQ 154

[Close]

BLAST of PI0016283 vs. NCBI nr
Match: KAA0040193.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK25936.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 234.2 bits (596), Expect = 8.7e-58
Identity = 116/154 (75.32%), Postives = 132/154 (85.71%), Query Frame = 0


Query: 7   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYD 66
           MSSSIIALLK ++LTG NY TWKS LNMILVI DLR +LME+CPP P +NASQ+V+DAYD
Sbjct: 1   MSSSIIALLKKDQLTGKNYVTWKSKLNMILVIADLRVILMEDCPPFPSQNASQSVKDAYD 60

Query: 67  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 126
            WTK N+KAR+YIL SM D+LSKKHE MVTARQIMDS++EMFGQPSIQI+ EAIKYVYN 
Sbjct: 61  CWTKTNDKARLYILVSMFDILSKKHEIMVTARQIMDSIREMFGQPSIQIKQEAIKYVYNV 120

Query: 127 RMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQ 161
            MKE QSVREHVLDM+V FN+AE N  V DE+SQ
Sbjct: 121 CMKEDQSVREHVLDMIVNFNIAEMNRVVFDEKSQ 154

[Close]

BLAST of PI0016283 vs. NCBI nr
Match: XP_038882358.1 (uncharacterized protein LOC120073622 [Benincasa hispida])

HSP 1 Score: 233.4 bits (594), Expect = 1.5e-57
Identity = 111/154 (72.08%), Postives = 133/154 (86.36%), Query Frame = 0


Query: 7   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYD 66
           M+SSII LL +EKL GDNY+ WKSNLN ILV+DDLRFVL EECP +P  NA++TVR+AYD
Sbjct: 1   MNSSIIQLLTSEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPTSNANRTVREAYD 60

Query: 67  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 126
           RW KANEKAR+YILASMSDVL+KKHES+ TA++I+DSL+E+FGQPS  +RHEAIK++Y  
Sbjct: 61  RWVKANEKARIYILASMSDVLAKKHESLATAKEIIDSLRELFGQPSWSLRHEAIKHIYTK 120

Query: 127 RMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQ 161
           RMKEG SVREHVLDMM+ FN+AE NG  IDE +Q
Sbjct: 121 RMKEGTSVREHVLDMMMYFNIAEANGGPIDEANQ 154

The following BLAST results are available for this feature:

BLAST of PI0016283 vs.


Match Name	E-value	Identity	Description

BLAST of PI0016283 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D0D9	4.3e-63	80.52	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210...	[more]
A0A5A7VA67	4.3e-63	80.52	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G0011...	[more]
A0A5D3BM47	4.5e-60	79.22	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G0004...	[more]
A0A5D3DQJ2	4.2e-58	75.32	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G0033...	[more]
A0A6J1DWL0	7.1e-58	73.38	uncharacterized protein LOC111024734 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]

BLAST of PI0016283 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063887.1	8.9e-63	80.52	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK15919.1	8.9e-63	80.52	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK00843.1	9.2e-60	79.22	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0040193.1	8.7e-58	75.32	gag/pol protein [Cucumis melo var. makuwa] >TYK25936.1 gag/pol protein [Cucumis ...	[more]
XP_038882358.1	1.5e-57	72.08	uncharacterized protein LOC120073622 [Benincasa hispida]	[more]

BLAST of PI0016283 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 68..159 e-value: 1.7E-10 score: 40.8
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 24..160
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 24..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0016283.1	PI0016283.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding