PI0016171 (gene) Melon (PI 482460) v1

Overview


Name	PI0016171
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr03: 15924925 .. 15925089 (-)
RNA-Seq Expression	PI0016171
Synteny	PI0016171

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAGTTCCGAGGTAATAGATGACGTCGATGAAGTGGACTCAACATACGCAACGACGGGAGGTGACGACATTCAGTACGTTGAGAGCTTGGACGAATGGAGTAAGTGGAGGGACGATAAAGCGGAGGAGATGTTCAATGAATGGCAACTGCGGAATCAGTAG

mRNA sequence

ATGACGAGTTCCGAGGTAATAGATGACGTCGATGAAGTGGACTCAACATACGCAACGACGGGAGGTGACGACATTCAGTACGTTGAGAGCTTGGACGAATGGAGTAAGTGGAGGGACGATAAAGCGGAGGAGATGTTCAATGAATGGCAACTGCGGAATCAGTAG

Coding sequence (CDS)

ATGACGAGTTCCGAGGTAATAGATGACGTCGATGAAGTGGACTCAACATACGCAACGACGGGAGGTGACGACATTCAGTACGTTGAGAGCTTGGACGAATGGAGTAAGTGGAGGGACGATAAAGCGGAGGAGATGTTCAATGAATGGCAACTGCGGAATCAGTAG

Protein sequence

MTSSEVIDDVDEVDSTYATTGGDDIQYVESLDEWSKWRDDKAEEMFNEWQLRNQ

Homology

[Close]

BLAST of PI0016171 vs. ExPASy TrEMBL
Match: A0A5D3D9Z3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold519G00220 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.0e-12
Identity = 35/54 (64.81%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTSSEVIDDVDEVDSTYATTGGDDIQYVESLDEWSKWRDDKAEEMFNEWQLRNQ 55
           MT+ ++ D++DEVDST+ATT  DDI Y+E+ +EWS+WRDD AEEMF EW+LRNQ
Sbjct: 313 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 366

[Close]

BLAST of PI0016171 vs. ExPASy TrEMBL
Match: A0A5A7TWH8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001380 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.0e-12
Identity = 35/54 (64.81%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTSSEVIDDVDEVDSTYATTGGDDIQYVESLDEWSKWRDDKAEEMFNEWQLRNQ 55
           MT+ ++ D++DEVDST+ATT  DDI Y+E+ +EWS+WRDD AEEMF EW+LRNQ
Sbjct: 335 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 388

[Close]

BLAST of PI0016171 vs. ExPASy TrEMBL
Match: A0A5A7UGH9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00700 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.0e-12
Identity = 35/54 (64.81%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTSSEVIDDVDEVDSTYATTGGDDIQYVESLDEWSKWRDDKAEEMFNEWQLRNQ 55
           MT+ ++ D++DEVDST+ATT  DDI Y+E+ +EWS+WRDD AEEMF EW+LRNQ
Sbjct: 218 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 271

[Close]

BLAST of PI0016171 vs. ExPASy TrEMBL
Match: A0A5A7VHB0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00240 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.0e-12
Identity = 35/54 (64.81%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTSSEVIDDVDEVDSTYATTGGDDIQYVESLDEWSKWRDDKAEEMFNEWQLRNQ 55
           MT+ ++ D++DEVDST+ATT  DDI Y+E+ +EWS+WRDD AEEMF EW+LRNQ
Sbjct: 335 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 388

[Close]

BLAST of PI0016171 vs. ExPASy TrEMBL
Match: A0A5A7VG29 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3818G00010 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.0e-12
Identity = 35/54 (64.81%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTSSEVIDDVDEVDSTYATTGGDDIQYVESLDEWSKWRDDKAEEMFNEWQLRNQ 55
           MT+ ++ D++DEVDST+ATT  DDI Y+E+ +EWS+WRDD AEEMF EW+LRNQ
Sbjct: 335 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 388

[Close]

BLAST of PI0016171 vs. NCBI nr
Match: XP_031740445.1 (uncharacterized protein LOC116403439 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-12
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTSSEVIDDVDEVDSTYATTGGDDIQYVESLDEWSKWRDDKAEEMFNEWQLRNQ 55
           MT+   +DDVDE DSTYAT GGDDIQ+VE+ +EW++WRDD A EMFNEWQLRN+
Sbjct: 274 MTNVSFVDDVDEGDSTYATIGGDDIQFVENSNEWTQWRDDLAGEMFNEWQLRNE 327

[Close]

BLAST of PI0016171 vs. NCBI nr
Match: KAA0065286.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 1.4e-11
Identity = 35/54 (64.81%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTSSEVIDDVDEVDSTYATTGGDDIQYVESLDEWSKWRDDKAEEMFNEWQLRNQ 55
           MT+ ++ D++DEVDST+ATT  DDI Y+E+ +EWS+WRDD AEEMF EW+LRNQ
Sbjct: 335 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 388

[Close]

BLAST of PI0016171 vs. NCBI nr
Match: KAA0048281.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 1.4e-11
Identity = 35/54 (64.81%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTSSEVIDDVDEVDSTYATTGGDDIQYVESLDEWSKWRDDKAEEMFNEWQLRNQ 55
           MT+ ++ D++DEVDST+ATT  DDI Y+E+ +EWS+WRDD AEEMF EW+LRNQ
Sbjct: 269 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 322

[Close]

BLAST of PI0016171 vs. NCBI nr
Match: KAA0068124.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 1.4e-11
Identity = 35/54 (64.81%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTSSEVIDDVDEVDSTYATTGGDDIQYVESLDEWSKWRDDKAEEMFNEWQLRNQ 55
           MT+ ++ D++DEVDST+ATT  DDI Y+E+ +EWS+WRDD AEEMF EW+LRNQ
Sbjct: 290 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 343

[Close]

BLAST of PI0016171 vs. NCBI nr
Match: KAA0054148.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 1.4e-11
Identity = 35/54 (64.81%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTSSEVIDDVDEVDSTYATTGGDDIQYVESLDEWSKWRDDKAEEMFNEWQLRNQ 55
           MT+ ++ D++DEVDST+ATT  DDI Y+E+ +EWS+WRDD AEEMF EW+LRNQ
Sbjct: 218 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 271

The following BLAST results are available for this feature:

BLAST of PI0016171 vs.


Match Name	E-value	Identity	Description

BLAST of PI0016171 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D9Z3	7.0e-12	64.81	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TWH8	7.0e-12	64.81	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UGH9	7.0e-12	64.81	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VHB0	7.0e-12	64.81	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VG29	7.0e-12	64.81	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0016171 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031740445.1	1.7e-12	70.37	uncharacterized protein LOC116403439 [Cucumis sativus]	[more]
KAA0065286.1	1.4e-11	64.81	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048281.1	1.4e-11	64.81	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0068124.1	1.4e-11	64.81	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0054148.1	1.4e-11	64.81	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0016171 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 51..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0016171.1	PI0016171.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding