PI0016167 (gene) Melon (PI 482460) v1

Overview


Name	PI0016167
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr08: 4326321 .. 4326815 (+)
RNA-Seq Expression	PI0016167
Synteny	PI0016167

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTACCTGGTGGAAGTTTCGAACGTCGTCTACTTCTTGGAAAGCCAAATTGAAGAAATTTTCGAGAAAGCTAACGCTGTTGATGCGGTAACCGATCCCCTCGACGGATTACCTATAAATGAGTTGTTGATAAGAGTTGACACTCTAGAGGCAAAAGTTGCAAGAACTGGTAACTACGAGCGTGGGGACAGTTCAGCGGGCTCTGTTGCCCACATAGAGGAACGGGTTGGCAAACTAGATAGCTTCCAAAAGTCGATTGTTGAGATGATAAACAACATGTCAGAGGATTTTCGTGCCGCTCTTGACGTCATCAGGAATGAGATCGCAGACGTGAGCACGAGGGTGAACCTCACGATGCGAGCCATGGCAAACCAAGCTCCAACTAGAGGAGCTATACAAGTTAACAGGGTGAAGATCCCCGAACCCAAACCCTTCTATGGGGCAAGGGATGCGAAAGCCTTGGAGAACTTCATATTTAACCTCGAACAATAG

mRNA sequence

ATGCTCTACCTGGTGGAAGTTTCGAACGTCGTCTACTTCTTGGAAAGCCAAATTGAAGAAATTTTCGAGAAAGCTAACGCTGTTGATGCGGTAACCGATCCCCTCGACGGATTACCTATAAATGAGTTGTTGATAAGAGTTGACACTCTAGAGGCAAAAGTTGCAAGAACTGGTAACTACGAGCGTGGGGACAGTTCAGCGGGCTCTGTTGCCCACATAGAGGAACGGGTTGGCAAACTAGATAGCTTCCAAAAGTCGATTGTTGAGATGATAAACAACATGTCAGAGGATTTTCGTGCCGCTCTTGACGTCATCAGGAATGAGATCGCAGACGTGAGCACGAGGGTGAACCTCACGATGCGAGCCATGGCAAACCAAGCTCCAACTAGAGGAGCTATACAAGTTAACAGGGTGAAGATCCCCGAACCCAAACCCTTCTATGGGGCAAGGGATGCGAAAGCCTTGGAGAACTTCATATTTAACCTCGAACAATAG

Coding sequence (CDS)

ATGCTCTACCTGGTGGAAGTTTCGAACGTCGTCTACTTCTTGGAAAGCCAAATTGAAGAAATTTTCGAGAAAGCTAACGCTGTTGATGCGGTAACCGATCCCCTCGACGGATTACCTATAAATGAGTTGTTGATAAGAGTTGACACTCTAGAGGCAAAAGTTGCAAGAACTGGTAACTACGAGCGTGGGGACAGTTCAGCGGGCTCTGTTGCCCACATAGAGGAACGGGTTGGCAAACTAGATAGCTTCCAAAAGTCGATTGTTGAGATGATAAACAACATGTCAGAGGATTTTCGTGCCGCTCTTGACGTCATCAGGAATGAGATCGCAGACGTGAGCACGAGGGTGAACCTCACGATGCGAGCCATGGCAAACCAAGCTCCAACTAGAGGAGCTATACAAGTTAACAGGGTGAAGATCCCCGAACCCAAACCCTTCTATGGGGCAAGGGATGCGAAAGCCTTGGAGAACTTCATATTTAACCTCGAACAATAG

Protein sequence

MLYLVEVSNVVYFLESQIEEIFEKANAVDAVTDPLDGLPINELLIRVDTLEAKVARTGNYERGDSSAGSVAHIEERVGKLDSFQKSIVEMINNMSEDFRAALDVIRNEIADVSTRVNLTMRAMANQAPTRGAIQVNRVKIPEPKPFYGARDAKALENFIFNLEQ

Homology

[Close]

BLAST of PI0016167 vs. ExPASy TrEMBL
Match: A0A5A7SKW3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G005100 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.7e-56
Identity = 118/166 (71.08%), Postives = 139/166 (83.73%), Query Frame = 0


Query: 1   MLYLVEVSNVVYFLESQIEEIFEKANAVDAVTDPLDGLPINELLIRVDTLE--AKVARTG 60
           MLYLVEV + + +LES++EEIF+K N +DAVT  ++G PI EL+ RVD LE    + RT 
Sbjct: 22  MLYLVEVPDSIRYLESRLEEIFQKTNTIDAVTGRVEGFPIQELMTRVDALETTVNIGRTV 81

Query: 61  NYERGDSSAGSVAHIEERVGKLDSFQKSIVEMINNMSEDFRAALDVIRNEIADVSTRVNL 120
           NYERGDSS GSVAHIEERV +LDS QK+++EMIN MSEDFRA LDV+RNEIADV+ R+NL
Sbjct: 82  NYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLNL 141

Query: 121 TMRAMANQAPTRGAIQVNRVKIPEPKPFYGARDAKALENFIFNLEQ 165
           TMRAMANQAP  GAI V+RVKIPEPKPF GARDAKALEN+IF+LEQ
Sbjct: 142 TMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQ 187

[Close]

BLAST of PI0016167 vs. ExPASy TrEMBL
Match: A0A5A7TU46 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G001680 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 1.1e-55
Identity = 117/166 (70.48%), Postives = 138/166 (83.13%), Query Frame = 0


Query: 1   MLYLVEVSNVVYFLESQIEEIFEKANAVDAVTDPLDGLPINELLIRVDTLE--AKVARTG 60
           MLYLVEV + + +LES++EEIFEK N +DAV   ++G PI EL+ RVD LE    + RT 
Sbjct: 22  MLYLVEVPDSIRYLESRLEEIFEKTNTIDAVAGRVEGFPIQELMTRVDALETTVNIGRTV 81

Query: 61  NYERGDSSAGSVAHIEERVGKLDSFQKSIVEMINNMSEDFRAALDVIRNEIADVSTRVNL 120
           NYERGDSS GSVAHIEERV +LDS QK+++EMIN MSEDFRA LDV+RNEIADV+ R++L
Sbjct: 82  NYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSL 141

Query: 121 TMRAMANQAPTRGAIQVNRVKIPEPKPFYGARDAKALENFIFNLEQ 165
           TMRAMANQAP  GAI V+RVKIPEPKPF GARDAKALEN+IF+LEQ
Sbjct: 142 TMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQ 187

[Close]

BLAST of PI0016167 vs. ExPASy TrEMBL
Match: A0A5A7UIP7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27G00270 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 3.1e-55
Identity = 117/166 (70.48%), Postives = 138/166 (83.13%), Query Frame = 0


Query: 1   MLYLVEVSNVVYFLESQIEEIFEKANAVDAVTDPLDGLPINELLIRVDTLE--AKVARTG 60
           MLYLVEV + + +LES++EEI EK N +DAV   ++G PI EL+ RVD LE    + RT 
Sbjct: 22  MLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFPIQELVTRVDALETTVNIGRTV 81

Query: 61  NYERGDSSAGSVAHIEERVGKLDSFQKSIVEMINNMSEDFRAALDVIRNEIADVSTRVNL 120
           NYERGDSS GSVAHIEERV +LDS QK+++EMIN MSEDFRA LDV+RNEIADV+ R++L
Sbjct: 82  NYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSL 141

Query: 121 TMRAMANQAPTRGAIQVNRVKIPEPKPFYGARDAKALENFIFNLEQ 165
           TMRAMANQAPT GAI V+RVKIPEPKPF GARDAKALEN+IF+LEQ
Sbjct: 142 TMRAMANQAPTGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQ 187

[Close]

BLAST of PI0016167 vs. ExPASy TrEMBL
Match: A0A5A7SZS9 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G00960 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 6.9e-55
Identity = 115/166 (69.28%), Postives = 137/166 (82.53%), Query Frame = 0


Query: 1   MLYLVEVSNVVYFLESQIEEIFEKANAVDAVTDPLDGLPINELLIRVDTLEA--KVARTG 60
           MLYLVEV + + +LES+++EIFEK N +DAV   ++G PI EL+ RVD LE   K+ RT 
Sbjct: 22  MLYLVEVPDSIRYLESRLDEIFEKTNTIDAVAGRVEGFPIQELMTRVDALETTIKIGRTV 81

Query: 61  NYERGDSSAGSVAHIEERVGKLDSFQKSIVEMINNMSEDFRAALDVIRNEIADVSTRVNL 120
           NYERGDSS GSVAHIEERV +LDS QK+++EMIN MSEDFRA LDV+RNEI DV+ R++L
Sbjct: 82  NYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLDVVRNEIVDVNARLSL 141

Query: 121 TMRAMANQAPTRGAIQVNRVKIPEPKPFYGARDAKALENFIFNLEQ 165
           TMRAMAN AP  GAI V+RVKIPEPKPF GARDAKALEN+IF+LEQ
Sbjct: 142 TMRAMANHAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQ 187

[Close]

BLAST of PI0016167 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 9.1e-55
Identity = 116/166 (69.88%), Postives = 137/166 (82.53%), Query Frame = 0


Query: 1   MLYLVEVSNVVYFLESQIEEIFEKANAVDAVTDPLDGLPINELLIRVDTLE--AKVARTG 60
           MLYLVEV + + +LES++EEI EK N +DAV   ++G PI EL+ RVD LE    + RT 
Sbjct: 22  MLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTVNIGRTV 81

Query: 61  NYERGDSSAGSVAHIEERVGKLDSFQKSIVEMINNMSEDFRAALDVIRNEIADVSTRVNL 120
           NYERGDSS GSVAHIEERV +LDS QK+++EMIN MSEDFRA LDV+RNEIADV+ R++L
Sbjct: 82  NYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSL 141

Query: 121 TMRAMANQAPTRGAIQVNRVKIPEPKPFYGARDAKALENFIFNLEQ 165
           TMRAMANQAP  GAI V+RVKIPEPKPF GARDAKALEN+IF+LEQ
Sbjct: 142 TMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQ 187

[Close]

BLAST of PI0016167 vs. NCBI nr
Match: KAA0031722.1 (uncharacterized protein E6C27_scaffold139G005100 [Cucumis melo var. makuwa])

HSP 1 Score: 228.8 bits (582), Expect = 3.4e-56
Identity = 118/166 (71.08%), Postives = 139/166 (83.73%), Query Frame = 0


Query: 1   MLYLVEVSNVVYFLESQIEEIFEKANAVDAVTDPLDGLPINELLIRVDTLE--AKVARTG 60
           MLYLVEV + + +LES++EEIF+K N +DAVT  ++G PI EL+ RVD LE    + RT 
Sbjct: 22  MLYLVEVPDSIRYLESRLEEIFQKTNTIDAVTGRVEGFPIQELMTRVDALETTVNIGRTV 81

Query: 61  NYERGDSSAGSVAHIEERVGKLDSFQKSIVEMINNMSEDFRAALDVIRNEIADVSTRVNL 120
           NYERGDSS GSVAHIEERV +LDS QK+++EMIN MSEDFRA LDV+RNEIADV+ R+NL
Sbjct: 82  NYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLNL 141

Query: 121 TMRAMANQAPTRGAIQVNRVKIPEPKPFYGARDAKALENFIFNLEQ 165
           TMRAMANQAP  GAI V+RVKIPEPKPF GARDAKALEN+IF+LEQ
Sbjct: 142 TMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQ 187

[Close]

BLAST of PI0016167 vs. NCBI nr
Match: KAA0046982.1 (uncharacterized protein E6C27_scaffold230G001680 [Cucumis melo var. makuwa])

HSP 1 Score: 226.1 bits (575), Expect = 2.2e-55
Identity = 117/166 (70.48%), Postives = 138/166 (83.13%), Query Frame = 0


Query: 1   MLYLVEVSNVVYFLESQIEEIFEKANAVDAVTDPLDGLPINELLIRVDTLE--AKVARTG 60
           MLYLVEV + + +LES++EEIFEK N +DAV   ++G PI EL+ RVD LE    + RT 
Sbjct: 22  MLYLVEVPDSIRYLESRLEEIFEKTNTIDAVAGRVEGFPIQELMTRVDALETTVNIGRTV 81

Query: 61  NYERGDSSAGSVAHIEERVGKLDSFQKSIVEMINNMSEDFRAALDVIRNEIADVSTRVNL 120
           NYERGDSS GSVAHIEERV +LDS QK+++EMIN MSEDFRA LDV+RNEIADV+ R++L
Sbjct: 82  NYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSL 141

Query: 121 TMRAMANQAPTRGAIQVNRVKIPEPKPFYGARDAKALENFIFNLEQ 165
           TMRAMANQAP  GAI V+RVKIPEPKPF GARDAKALEN+IF+LEQ
Sbjct: 142 TMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQ 187

[Close]

BLAST of PI0016167 vs. NCBI nr
Match: KAA0053339.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 224.6 bits (571), Expect = 6.4e-55
Identity = 117/166 (70.48%), Postives = 138/166 (83.13%), Query Frame = 0


Query: 1   MLYLVEVSNVVYFLESQIEEIFEKANAVDAVTDPLDGLPINELLIRVDTLE--AKVARTG 60
           MLYLVEV + + +LES++EEI EK N +DAV   ++G PI EL+ RVD LE    + RT 
Sbjct: 22  MLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFPIQELVTRVDALETTVNIGRTV 81

Query: 61  NYERGDSSAGSVAHIEERVGKLDSFQKSIVEMINNMSEDFRAALDVIRNEIADVSTRVNL 120
           NYERGDSS GSVAHIEERV +LDS QK+++EMIN MSEDFRA LDV+RNEIADV+ R++L
Sbjct: 82  NYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSL 141

Query: 121 TMRAMANQAPTRGAIQVNRVKIPEPKPFYGARDAKALENFIFNLEQ 165
           TMRAMANQAPT GAI V+RVKIPEPKPF GARDAKALEN+IF+LEQ
Sbjct: 142 TMRAMANQAPTGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQ 187

[Close]

BLAST of PI0016167 vs. NCBI nr
Match: KAA0035456.1 (uncharacterized protein E6C27_scaffold285G00960 [Cucumis melo var. makuwa])

HSP 1 Score: 223.4 bits (568), Expect = 1.4e-54
Identity = 115/166 (69.28%), Postives = 137/166 (82.53%), Query Frame = 0


Query: 1   MLYLVEVSNVVYFLESQIEEIFEKANAVDAVTDPLDGLPINELLIRVDTLEA--KVARTG 60
           MLYLVEV + + +LES+++EIFEK N +DAV   ++G PI EL+ RVD LE   K+ RT 
Sbjct: 22  MLYLVEVPDSIRYLESRLDEIFEKTNTIDAVAGRVEGFPIQELMTRVDALETTIKIGRTV 81

Query: 61  NYERGDSSAGSVAHIEERVGKLDSFQKSIVEMINNMSEDFRAALDVIRNEIADVSTRVNL 120
           NYERGDSS GSVAHIEERV +LDS QK+++EMIN MSEDFRA LDV+RNEI DV+ R++L
Sbjct: 82  NYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLDVVRNEIVDVNARLSL 141

Query: 121 TMRAMANQAPTRGAIQVNRVKIPEPKPFYGARDAKALENFIFNLEQ 165
           TMRAMAN AP  GAI V+RVKIPEPKPF GARDAKALEN+IF+LEQ
Sbjct: 142 TMRAMANHAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQ 187

[Close]

BLAST of PI0016167 vs. NCBI nr
Match: KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 223.0 bits (567), Expect = 1.9e-54
Identity = 116/166 (69.88%), Postives = 137/166 (82.53%), Query Frame = 0


Query: 1   MLYLVEVSNVVYFLESQIEEIFEKANAVDAVTDPLDGLPINELLIRVDTLE--AKVARTG 60
           MLYLVEV + + +LES++EEI EK N +DAV   ++G PI EL+ RVD LE    + RT 
Sbjct: 22  MLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFPIQELMTRVDALETTVNIGRTV 81

Query: 61  NYERGDSSAGSVAHIEERVGKLDSFQKSIVEMINNMSEDFRAALDVIRNEIADVSTRVNL 120
           NYERGDSS GSVAHIEERV +LDS QK+++EMIN MSEDFRA LDV+RNEIADV+ R++L
Sbjct: 82  NYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLDVVRNEIADVNARLSL 141

Query: 121 TMRAMANQAPTRGAIQVNRVKIPEPKPFYGARDAKALENFIFNLEQ 165
           TMRAMANQAP  GAI V+RVKIPEPKPF GARDAKALEN+IF+LEQ
Sbjct: 142 TMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLEQ 187

The following BLAST results are available for this feature:

BLAST of PI0016167 vs.


Match Name	E-value	Identity	Description

BLAST of PI0016167 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SKW3	1.7e-56	71.08	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TU46	1.1e-55	70.48	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7UIP7	3.1e-55	70.48	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A5A7SZS9	6.9e-55	69.28	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3C4R1	9.1e-55	69.88	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]

BLAST of PI0016167 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031722.1	3.4e-56	71.08	uncharacterized protein E6C27_scaffold139G005100 [Cucumis melo var. makuwa]	[more]
KAA0046982.1	2.2e-55	70.48	uncharacterized protein E6C27_scaffold230G001680 [Cucumis melo var. makuwa]	[more]
KAA0053339.1	6.4e-55	70.48	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0035456.1	1.4e-54	69.28	uncharacterized protein E6C27_scaffold285G00960 [Cucumis melo var. makuwa]	[more]
KAA0037220.1	1.9e-54	69.88	reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta...	[more]

BLAST of PI0016167 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 155..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0016167.1	PI0016167.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding