PI0015650 (gene) Melon (PI 482460) v1

Overview


Name	PI0015650
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Protein Ycf2-like
Location	chr04: 18663348 .. 18664235 (-)
RNA-Seq Expression	PI0015650
Synteny	PI0015650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGAATTGCGGAGAAATACCAAAGTTGAAAAAGGAAGAAATTACGGGGGAAAGACATTTAAAGAGAAGGTATTTTGAGAGTCTGAAGTTTGTTACAAGGCAGTACTTAAACGTGATGTTTAATGTTAGCACTGCTGGAACCAATGATGACCGCCTTGAGATGGCGAAACTGTATTTTCTTGAAAGCTTTCTGATCCCAGAATAAGAGAACCTTCATATAGACTGGGATCATATATTGAAGGTTGATGATGACAAACTATTTGACAGCTAACCATGGGGTAGGGTGGCATTTGATCTACTAGTTGAATTTATGAATAGAGTTGTATGTAGTAAAGGACAAACAGGAATATTGATGGAAGGGTTTATATTCCCAATTCTGGCTTAGGCATACGAGGTAATACCAACCTTGAGTTCACCATGCAACTTCTTTGCAAGAAAAGTTTCAAAAAAGGTACAACGAATAATCAATTGGGCTACAGATATACAACCAAAATGGAAGGATTTGAAGCAAAAAGTGTTTGATTCACCCAAGGTATGAAGTTCTTGAATCAATAGTAAAAACATCTCATCCTATGCTGCTTTGCTAACCTATTAAATGACTTGTATTTGTGCTAACAACTTGAAGTATGACCACTACTCGCAACCCCTGAAGAAGTCACAATACCATACTTTACATCGTTCCACGAGGCTGAAAGAAGGATTCTAAAAGAGGCCGAAGATGAAATCAGAAGGAGTCTGTTAGGGCTAAAATAGACCAAACTTTATTTGTGCAATTTTTCACATTTTTATTCATTTACTCACTAAAATGTTATTTTTATGCAGAATAATATTCTAGGCTCCGTTACGAGTCCAACACCACTAAAAATACCTAAATCAAAGTTCTAA

mRNA sequence

ATGATTGAATTGCGGAGAAATACCAAAGTTGAAAAAGGAAGAAATTACGGGGGAAAGACATTTAAAGAGAAGGCATACGAGGTAATACCAACCTTGAGTTCACCATGCAACTTCTTTGCAAGAAAAGTTTCAAAAAAGGTACAACGAATAATCAATTGGGCTACAGATATACAACCAAAATGGAAGGATTTGAAGCAAAAAGTGTTTGATTCACCCAAGAATAATATTCTAGGCTCCGTTACGAGTCCAACACCACTAAAAATACCTAAATCAAAGTTCTAA

Coding sequence (CDS)

ATGATTGAATTGCGGAGAAATACCAAAGTTGAAAAAGGAAGAAATTACGGGGGAAAGACATTTAAAGAGAAGGCATACGAGGTAATACCAACCTTGAGTTCACCATGCAACTTCTTTGCAAGAAAAGTTTCAAAAAAGGTACAACGAATAATCAATTGGGCTACAGATATACAACCAAAATGGAAGGATTTGAAGCAAAAAGTGTTTGATTCACCCAAGAATAATATTCTAGGCTCCGTTACGAGTCCAACACCACTAAAAATACCTAAATCAAAGTTCTAA

Protein sequence

MIELRRNTKVEKGRNYGGKTFKEKAYEVIPTLSSPCNFFARKVSKKVQRIINWATDIQPKWKDLKQKVFDSPKNNILGSVTSPTPLKIPKSKF

Homology

[Close]

BLAST of PI0015650 vs. ExPASy TrEMBL
Match: A0A5A7TZZ0 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001330 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.3e-15
Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 25  AYEVIPTLSSPCNFFARKVSKKVQRIINWATDIQPKWKDLKQKVFDSPKNNILGSVTSPT 84
           AYEVIPTLS+P NFFA ++S +V RIINWA D QPKWKDLKQKVFDSP   +   + +PT
Sbjct: 134 AYEVIPTLSTPTNFFATRISNEVPRIINWAADTQPKWKDLKQKVFDSPMLKVSPMLATPT 193

Query: 85  PLKIP 90
            + +P
Sbjct: 194 EVGMP 198

[Close]

BLAST of PI0015650 vs. ExPASy TrEMBL
Match: A0A5A7U290 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold612G00160 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.8e-15
Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 25  AYEVIPTLSSPCNFFARKVSKKVQRIINWATDIQPKWKDLKQKVFDSPKNNILGSVTSPT 84
           AYEVIPTL +P NFFA ++S +V RIINWA D QPKWKDLKQKVFDSP   +   + +PT
Sbjct: 50  AYEVIPTLGTPPNFFATRISNEVLRIINWAADTQPKWKDLKQKVFDSPTLKVSHMLATPT 109

Query: 85  PLKIP 90
            + IP
Sbjct: 110 EVGIP 114

[Close]

BLAST of PI0015650 vs. ExPASy TrEMBL
Match: A0A5D3DHZ2 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G002220 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.8e-15
Identity = 48/94 (51.06%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 5   RRNTKVEKGRN-------YGGKTFK--EKAYEVIPTLSSPCNFFARKVSKKVQRIINWAT 64
           +R+   EKG+        YGG  F     AYEVIPTLS+P NFFA ++S +V RIINWA 
Sbjct: 125 KRSKAREKGKKQGANGYFYGGFIFPILAWAYEVIPTLSTPPNFFATRISNEVPRIINWAA 184

Query: 65  DIQPKWKDLKQKVFDSPKNNILGSVTSPTPLKIP 90
           D QPKWKDLKQKVFDSP   +   + +P  + +P
Sbjct: 185 DTQPKWKDLKQKVFDSPTLEVSPMLATPDEVGMP 218

[Close]

BLAST of PI0015650 vs. ExPASy TrEMBL
Match: A0A5D3E3E8 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00160 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-14
Identity = 44/83 (53.01%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 12  KGRNY-----GGKTFKEKAYEVIPTLSSPCNFFARKVSKKVQRIINWATDIQPKWKDLKQ 71
           +G+N+     GG      AYEVIPTLS+P NF A ++S +V RIINWA D QPKWKDLKQ
Sbjct: 112 QGKNWDFDGGGGFPILTWAYEVIPTLSTPPNFLATRISNEVPRIINWAADTQPKWKDLKQ 171

Query: 72  KVFDSPKNNILGSVTSPTPLKIP 90
           KVFDSP   +   + +PT + +P
Sbjct: 172 KVFDSPTLEVSPMLATPTEVGMP 194

[Close]

BLAST of PI0015650 vs. ExPASy TrEMBL
Match: A0A5A7U4J7 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold355G00310 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-14
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 25  AYEVIPTLSSPCNFFARKVSKKVQRIINWATDIQPKWKDLKQKVFDSPKNNILGSVTSPT 84
           AYEVIPTLS+P NFFA ++S +V RIINWA D QPKWKDLKQKVFDSP   +   + +P 
Sbjct: 261 AYEVIPTLSTPPNFFATRISNEVPRIINWAADTQPKWKDLKQKVFDSPTLEVSSMLATPD 320

Query: 85  PLKIP 90
            + +P
Sbjct: 321 EVGMP 325

[Close]

BLAST of PI0015650 vs. NCBI nr
Match: KAA0048518.1 (protein Ycf2-like [Cucumis melo var. makuwa] >TYK28309.1 protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 4.8e-15
Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 25  AYEVIPTLSSPCNFFARKVSKKVQRIINWATDIQPKWKDLKQKVFDSPKNNILGSVTSPT 84
           AYEVIPTLS+P NFFA ++S +V RIINWA D QPKWKDLKQKVFDSP   +   + +PT
Sbjct: 134 AYEVIPTLSTPTNFFATRISNEVPRIINWAADTQPKWKDLKQKVFDSPMLKVSPMLATPT 193

Query: 85  PLKIP 90
            + +P
Sbjct: 194 EVGMP 198

[Close]

BLAST of PI0015650 vs. NCBI nr
Match: KAA0048346.1 (protein Ycf2-like [Cucumis melo var. makuwa] >TYK01119.1 protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-14
Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 25  AYEVIPTLSSPCNFFARKVSKKVQRIINWATDIQPKWKDLKQKVFDSPKNNILGSVTSPT 84
           AYEVIPTL +P NFFA ++S +V RIINWA D QPKWKDLKQKVFDSP   +   + +PT
Sbjct: 50  AYEVIPTLGTPPNFFATRISNEVLRIINWAADTQPKWKDLKQKVFDSPTLKVSHMLATPT 109

Query: 85  PLKIP 90
            + IP
Sbjct: 110 EVGIP 114

[Close]

BLAST of PI0015650 vs. NCBI nr
Match: TYK23192.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-14
Identity = 48/94 (51.06%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 5   RRNTKVEKGRN-------YGGKTFK--EKAYEVIPTLSSPCNFFARKVSKKVQRIINWAT 64
           +R+   EKG+        YGG  F     AYEVIPTLS+P NFFA ++S +V RIINWA 
Sbjct: 125 KRSKAREKGKKQGANGYFYGGFIFPILAWAYEVIPTLSTPPNFFATRISNEVPRIINWAA 184

Query: 65  DIQPKWKDLKQKVFDSPKNNILGSVTSPTPLKIP 90
           D QPKWKDLKQKVFDSP   +   + +P  + +P
Sbjct: 185 DTQPKWKDLKQKVFDSPTLEVSPMLATPDEVGMP 218

[Close]

BLAST of PI0015650 vs. NCBI nr
Match: KAA0050200.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 2.4e-14
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 25  AYEVIPTLSSPCNFFARKVSKKVQRIINWATDIQPKWKDLKQKVFDSPKNNILGSVTSPT 84
           AYEVIPTLS+P NFFA ++S +V RIINWA D QPKWKDLKQKVFDSP   +   + +P 
Sbjct: 261 AYEVIPTLSTPPNFFATRISNEVPRIINWAADTQPKWKDLKQKVFDSPTLEVSSMLATPD 320

Query: 85  PLKIP 90
            + +P
Sbjct: 321 EVGMP 325

[Close]

BLAST of PI0015650 vs. NCBI nr
Match: TYK30414.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 2.4e-14
Identity = 44/83 (53.01%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 12  KGRNY-----GGKTFKEKAYEVIPTLSSPCNFFARKVSKKVQRIINWATDIQPKWKDLKQ 71
           +G+N+     GG      AYEVIPTLS+P NF A ++S +V RIINWA D QPKWKDLKQ
Sbjct: 112 QGKNWDFDGGGGFPILTWAYEVIPTLSTPPNFLATRISNEVPRIINWAADTQPKWKDLKQ 171

Query: 72  KVFDSPKNNILGSVTSPTPLKIP 90
           KVFDSP   +   + +PT + +P
Sbjct: 172 KVFDSPTLEVSPMLATPTEVGMP 194

The following BLAST results are available for this feature:

BLAST of PI0015650 vs.


Match Name	E-value	Identity	Description

BLAST of PI0015650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZZ0	2.3e-15	63.08	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00...	[more]
A0A5A7U290	6.8e-15	63.08	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold612G00...	[more]
A0A5D3DHZ2	6.8e-15	51.06	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00...	[more]
A0A5D3E3E8	1.2e-14	53.01	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00...	[more]
A0A5A7U4J7	1.2e-14	61.54	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold355G00...	[more]

BLAST of PI0015650 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048518.1	4.8e-15	63.08	protein Ycf2-like [Cucumis melo var. makuwa] >TYK28309.1 protein Ycf2-like [Cucu...	[more]
KAA0048346.1	1.4e-14	63.08	protein Ycf2-like [Cucumis melo var. makuwa] >TYK01119.1 protein Ycf2-like [Cucu...	[more]
TYK23192.1	1.4e-14	51.06	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
KAA0050200.1	2.4e-14	61.54	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
TYK30414.1	2.4e-14	53.01	protein Ycf2-like [Cucumis melo var. makuwa]	[more]

BLAST of PI0015650 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0015650.1	PI0015650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane