PI0015629 (gene) Melon (PI 482460) v1

Overview
NamePI0015629
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr04: 12951421 .. 12955049 (+)
RNA-Seq ExpressionPI0015629
SyntenyPI0015629
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCCAGTCACATCTAGCAAAGGCCAAGGCCGATAATGATTCTACCTCTACTCCTCATGTAGTAGGTTTGTGCTCCCCTTACTCTAATACTAGAGCCACTAAACATTGGATCTTGGATTCTGGAGCATCATCAAACATTTGTTATTGCAAAGAACTATTCACATCATTACACTCCATATCAAATGTCACAATCTCTTTGCCTGACAATAGACAATTCAGTGTGAGTTTTGTCGGTGATAAATCTTGGTTAACACTTCAGAATGTGCTCTTTATACCTGATTTTCGGTTCAACCTTCTTTCAATCAGCGCCTTAACTGCAAATGTGCCAATTACAGTCCAATTTTATGTTGACAATTGTGTAATAGTGGACAAGTTTTCGTTGAAGATGATTGGCAAAGCTAGATTTTGGTATGACTTATATGTGCTCAAGTTGAGAAGCCCCTTGCTCTAGATTTGTCTACTCCCTCCATCTTGAATATTGCTGTTAATTTTCATGTTCAAAATACTGTTACTAGCACTTGTTATATTGAAGCAGTAGTTACAAGCACTTCTTATCTTTGAAAGATGAATTGCATATTACTCTTTCTACTAAAAAACACGTTTGTCCTATTTGTCTTTTGGCTAAATAAAGGAAGTTGTCCTTTGGTCCAAACAATCATTTGGCAAATAAAGCTTTTGATTTAGTACACTGTGACATTTGGGGCCCTTGCAAATCTTCTACATATTCAGGTCATCGTTTCTTTATAACTATTGTAGATGATTTCACAAGATATACTTGGGTTTACAAAAGCCTTTTGATTAGACAATGCCCCAGAACTTTCTTTCACAGATTTCTTTGCAAATAAGGGTGTCATTCATCAATTCTCATGTGTTGGCCATTCAGAACAAAACTCAGTTGTCGAGAGAAAACATCAGCATGTACTCAATGTTGCTCGAGCTCTTTATTTTCATTCTAAAGTTTCCATTCAATTTTGGGGAGGGGGTATCTTGACAACCACTTTTTATCGTTTGAATGGTTCTCATGTTGAATGCTCATCTATGCACATCTTTGGATGTCTTTGCATTGCATCATCACTCACTGCACATAGATTTAAGTTTCTGCACATAGATTTAAGTTTCAACCCCGTGTCATTACCTCAGTCTTTATGGGATATCCTCCAGGAATGAAAGGGTACAAGCTATATGATGTTGAAAAGAAGATTCTTTTTATCTCCAAAGACGACGTGTTTCATGAACATGTCTTTCCTTGTCAACACATTTCTTCACAAGATAGTTTTGTTGATCCATTTCCAGAACTTATTACCCTTGCCATTTTCGTGTTTGCGAGCATTCCTCCTAATGAAGCTGGGACTAGTACATTAGCCAAAGAAGTCGTTGCCACTCCAACCAACAACAATGTTGACTGTGAATAAAATAACAGTGCTTCGGTTGAGAATCAAGCAACACTTGGCAGTCAAGCACCCATTGTGATTCCAAACAATGTGCCAACCACTTCTCAAAATGTTAGACGGTTTACTCGGCATACCAAACTACCTTCTTACCTTCGTGAGTATCATTGTAACCTTGCTTTAAGAGTCCTCTATGAGCAACGTGTCTGCTACTCTTACAAAGTTCCCCATTCAGAAGTTCAAGTCTTATAACAAGTTGTCCTCAAGTTATAAGAAATTCTTACTCAATGTTACTTCTACCTTTGAGCCACAGTTCTACCTGAAGCTCTCTTTCAAAGAATGACGCGATGTTATGACAGATGAGTTAAAAGCCATGGAAACAAACGAGACTTGGTCAGTTGTTCCTCTTCCTCTGTATCGTTCCAACTTTATCAGATGTCCTCGAAGGGATTCATTTGTTCCTCTTCCTCCTACTCAACATTCCATAGGCTACAAATGGGTGACAAAATCAAGCATGGAGCCGATATATCCATTGACCGCTCAAAAGCAAGGCTTGTAGTCAAGTGGTACACTCGACAAGAAGACCTTGATTATGTTGAAATGTTTTCTCTAGTTGCCAAGCTTGTGACCGTAAGAATTTTATTAACTTTGGTTGTATCAATGAAATGGGAATTAGTTCAACTTGATGTCAACAATGCATTCCTACATTGATCTTATTGAAGAAGTTTATATCGATCTATTGTTAGGAAACAAACATGGTGTGGATCTATTGTTAGGAAACAAACATGGTGTGGTTGCTAGAAAGGGGGAGTGTTTAGTATGTAAACTTATAGGCTTAAACAAGCTTCTCGACAGTGATTTGATAAGTTTTCTCATGCCCTTTTATCCCTCGGATTCTAACAGTCCAAGTCAGATTATTCTTTGTTTATCCGTGGCTCTGGACAAACTTTCTTAGCACTTTTAGTCTATGTTGATGATATAGTAATAATCGGTGCTTCATCTACTAATTCTGTATTCAGTTAAAAGACCTTGGCTGCTTAAAATATTTTTGGATTGGAGTTGGCTCATTCATCTGATGGCCTATTTGATTCTCAAAGACATTATATTATTCAATTACCGAAAGATAATGGTCTAAAAATGCAAGTTGGAGATAGGAAGCTTCTTGATGATCCCATCTGCTTACCGAACACTTGAAAGATTATTATATCTCACTATTAGTCGTCCTGACATTATGTTGCAATCCATAAGCTCGGCTAATACGTTGCTCATCTGAGGCACTCACACTTAGCAGCAACCCATACATTACTTTGATACCTTAAAGGAACTCCTTGGTCAAGGTCTCTTCTTAAAGGCATCTACTTCTTTTCAAATACGTGCCTTCAGTGATGCAGATTGGGCTTCTTTCCTTGACACTCGCAAGTCTACTACGAGTTTTTGTGTGTTTCTTGGTGATTCATTAGTCTCTTGGAAGTCAAAGAAGCAAATGACAGATTTAAAATCATTAGCTGAAGCAGAATATAGAGCTTTAGCAGCCACTGTTGGTGAAGTTTCTTGGCTTGCCAACTGCTTAAAGACCTGCACATTACTATTTCTTTAACTCCTTTGGTATTTTGTGATTGTACTGCTGCCATTCACATAGTCTCATATCCAGCTTTTCATGAAAGAAAGAAGCATATAGAGTTAGACTGCCACTTCGTGCAAGATCATGTAGCAAAAGGCATTGATGCCTATCCGGACTCACTCCCAATTGGCTGACCCGGACTCACTCCCAATTGGCTGACATTTTCACCAAGGGCTTGCCATTTTCATTTACACTACTATTGTCCAAGATGGTTGTCTTAGACATACTAAGTCCATCTTGAAGGGGAGTTTTAGGATATAATGGAAATTAGTTATACTGTTAAAACTCCTGTTATTTTGTTATTGGTGGTCATTCTGATATCACCCACTTATGCTTACTATATTGCCCATTCTTAATAATAAAGATTGAGAAGTTATTTTGTCTTTGTGTTAGTTTAATAAAGACTGATGTTATCTGTTTCATACATCTGACCTGTGATTGATTGGAATGGCTTCTCGAAAATAGAATATCATATTTTAAGCAAAGAAGTTATTTGAAGGTATGGAAAGAAAAAAAAGGTGATTCACTGGGAAAGCACATTCCAGAATTTGACAACGTCAGAAGAAACACGATGGTGTGGAGAAAGCTGGTGGCAGAAAGAGAAATAGTGGTGGATGA

mRNA sequence

ATGCTCCAGTCACATCTAGCAAAGGCCAAGGCCGATAATGATTCTACCTCTACTCCTCATGTAGTAGTTGAGAAGCCCCTTGCTCTAGATTTGTCTACTCCCTCCATCTTGAATATTGCTGTTAATTTTCATGTTCAAAATACTGTTACTAGCACTTGTTATATTGAAGCAGTAGTTACAAAACTTATTACCCTTGCCATTTTCGTGTTTGCGAGCATTCCTCCTAATGAAGCTGGGACTAGTACATTAGCCAAAGAAGTCGTTGCCACTCCAACCAACAACAATAATCAAGCAACACTTGGCAGTCAAGCACCCATTGTGATTCCAAACAATGTGCCAACCACTTCTCAAAATGTTAGACGGTTTACTCGGCATACCAAACTACCTTCTTACCTTCGTGACAACGTGTCTGCTACTCTTACAAAGTTCCCCATTCAGAAGTTCAAGTCTTATAACAAGTTGTCCTCAAGTTATAAGAAATTCTTACTCAATAAGAAACACGATGGTGTGGAGAAAGCTGGTGGCAGAAAGAGAAATAGTGGTGGATGA

Coding sequence (CDS)

ATGCTCCAGTCACATCTAGCAAAGGCCAAGGCCGATAATGATTCTACCTCTACTCCTCATGTAGTAGTTGAGAAGCCCCTTGCTCTAGATTTGTCTACTCCCTCCATCTTGAATATTGCTGTTAATTTTCATGTTCAAAATACTGTTACTAGCACTTGTTATATTGAAGCAGTAGTTACAAAACTTATTACCCTTGCCATTTTCGTGTTTGCGAGCATTCCTCCTAATGAAGCTGGGACTAGTACATTAGCCAAAGAAGTCGTTGCCACTCCAACCAACAACAATAATCAAGCAACACTTGGCAGTCAAGCACCCATTGTGATTCCAAACAATGTGCCAACCACTTCTCAAAATGTTAGACGGTTTACTCGGCATACCAAACTACCTTCTTACCTTCGTGACAACGTGTCTGCTACTCTTACAAAGTTCCCCATTCAGAAGTTCAAGTCTTATAACAAGTTGTCCTCAAGTTATAAGAAATTCTTACTCAATAAGAAACACGATGGTGTGGAGAAAGCTGGTGGCAGAAAGAGAAATAGTGGTGGATGA

Protein sequence

MLQSHLAKAKADNDSTSTPHVVVEKPLALDLSTPSILNIAVNFHVQNTVTSTCYIEAVVTKLITLAIFVFASIPPNEAGTSTLAKEVVATPTNNNNQATLGSQAPIVIPNNVPTTSQNVRRFTRHTKLPSYLRDNVSATLTKFPIQKFKSYNKLSSSYKKFLLNKKHDGVEKAGGRKRNSGG
Homology
[Close]
BLAST of PI0015629 vs. ExPASy TrEMBL
Match: A0A0A0LAR9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G434950 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 4.1e-48
Identity = 140/245 (57.14%), Postives = 149/245 (60.82%), Query Frame = 0 

Query: 1   MLQSHLAKA----KADNDSTSTPHVVVEKPLALDLSTPSILNIAVNFHVQNTVTSTCYIE 60
           MLQSHLAKA    K +NDS STPHVV  + LALDLSTPSILN AVNFH QNTVT+T Y+E
Sbjct: 1   MLQSHLAKAKTKTKTNNDSASTPHVV--EALALDLSTPSILNTAVNFHAQNTVTTTRYLE 60

Query: 61  AVVTKLITLAIFVFASIPPNEAGTSTLAKEVVATPTNNN------------NQATLGSQA 120
           AVVTK++T AIF FA IP NEAGTSTLAKEVVATPTNNN            NQATL SQA
Sbjct: 61  AVVTKVVTPAIFEFAGIPFNEAGTSTLAKEVVATPTNNNVDCEQNNSAPVENQATLESQA 120

Query: 121 PIVIPNNVPTTSQNVRRFTRHTKLPSYL---------------RDNVSATLTKFPIQKFK 180
            IVIPNNVPTTSQNVRR TR   LP++L                 NV    TK PIQKF 
Sbjct: 121 SIVIPNNVPTTSQNVRRSTR---LPNHLLIFMSIIVTLLQESSMSNVLTMPTKLPIQKFM 180

[Close]
BLAST of PI0015629 vs. ExPASy TrEMBL
Match: A0A5D3C9G2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00180 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 8.3e-25
Identity = 80/128 (62.50%), Postives = 85/128 (66.41%), Query Frame = 0 

Query: 61  KLITLAIFVFASIPPNEAGTSTLAKEVVATPTNNN------------NQATLGSQAPIVI 120
           +L+T AIF FA IP NEA TSTLAKEVVATPTN N            NQAT  SQA  VI
Sbjct: 28  ELVTPAIFEFAGIPSNEARTSTLAKEVVATPTNYNVDYEQHNCAPVENQATFESQASSVI 87

Query: 121 PNNVPTTSQNVRRFTRHTKLPSYLRD------------NVSATLTKFPIQKFKSYNKLSS 165
           PNNVPTTSQ++R  TR TK PSYLR+            NVSA  TKFPI K  SYNKLSS
Sbjct: 88  PNNVPTTSQSIRWSTRLTKPPSYLREYHCNLLQESSMSNVSAMPTKFPILKLMSYNKLSS 147

[Close]
BLAST of PI0015629 vs. ExPASy TrEMBL
Match: A0A5A7UBB2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold404G001310 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 8.3e-25
Identity = 80/128 (62.50%), Postives = 85/128 (66.41%), Query Frame = 0 

Query: 61  KLITLAIFVFASIPPNEAGTSTLAKEVVATPTNNN------------NQATLGSQAPIVI 120
           +L+T AIF FA IP NEA TSTLAKEVVATPTN N            NQAT  SQA  VI
Sbjct: 28  ELVTPAIFEFAGIPSNEARTSTLAKEVVATPTNYNVDYEQHNCAPVENQATFESQASSVI 87

Query: 121 PNNVPTTSQNVRRFTRHTKLPSYLRD------------NVSATLTKFPIQKFKSYNKLSS 165
           PNNVPTTSQ++R  TR TK PSYLR+            NVSA  TKFPI K  SYNKLSS
Sbjct: 88  PNNVPTTSQSIRWSTRLTKPPSYLREYHCNLLQESSMSNVSAMPTKFPILKLMSYNKLSS 147

[Close]
BLAST of PI0015629 vs. NCBI nr
Match: TYK08491.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 123.6 bits (309), Expect = 1.7e-24
Identity = 80/128 (62.50%), Postives = 85/128 (66.41%), Query Frame = 0 

Query: 61  KLITLAIFVFASIPPNEAGTSTLAKEVVATPTNNN------------NQATLGSQAPIVI 120
           +L+T AIF FA IP NEA TSTLAKEVVATPTN N            NQAT  SQA  VI
Sbjct: 28  ELVTPAIFEFAGIPSNEARTSTLAKEVVATPTNYNVDYEQHNCAPVENQATFESQASSVI 87

Query: 121 PNNVPTTSQNVRRFTRHTKLPSYLRD------------NVSATLTKFPIQKFKSYNKLSS 165
           PNNVPTTSQ++R  TR TK PSYLR+            NVSA  TKFPI K  SYNKLSS
Sbjct: 88  PNNVPTTSQSIRWSTRLTKPPSYLREYHCNLLQESSMSNVSAMPTKFPILKLMSYNKLSS 147

[Close]
BLAST of PI0015629 vs. NCBI nr
Match: KAA0050861.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 123.6 bits (309), Expect = 1.7e-24
Identity = 80/128 (62.50%), Postives = 85/128 (66.41%), Query Frame = 0 

Query: 61  KLITLAIFVFASIPPNEAGTSTLAKEVVATPTNNN------------NQATLGSQAPIVI 120
           +L+T AIF FA IP NEA TSTLAKEVVATPTN N            NQAT  SQA  VI
Sbjct: 28  ELVTPAIFEFAGIPSNEARTSTLAKEVVATPTNYNVDYEQHNCAPVENQATFESQASSVI 87

Query: 121 PNNVPTTSQNVRRFTRHTKLPSYLRD------------NVSATLTKFPIQKFKSYNKLSS 165
           PNNVPTTSQ++R  TR TK PSYLR+            NVSA  TKFPI K  SYNKLSS
Sbjct: 88  PNNVPTTSQSIRWSTRLTKPPSYLREYHCNLLQESSMSNVSAMPTKFPILKLMSYNKLSS 147

The following BLAST results are available for this feature:
BLAST of PI0015629 vs.
Match NameE-valueIdentityDescription
BLAST of PI0015629 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAR94.1e-4857.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G434950 PE=4 SV=1[more]
A0A5D3C9G28.3e-2562.50Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7UBB28.3e-2562.50Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
BLAST of PI0015629 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK08491.11.7e-2462.50Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0050861.11.7e-2462.50Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
BLAST of PI0015629 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0015629.1PI0015629.1mRNA