PI0015580 (gene) Melon (PI 482460) v1

Overview
NamePI0015580
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionProtein CBG22662
Locationchr11: 3048152 .. 3048675 (-)
RNA-Seq ExpressionPI0015580
SyntenyPI0015580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTGGTGAAGAATCGAGAGGGGGAGGAGGAGGAGATGCAGTCGGAGGTGGTGGAGATTGGACTGGTGGCGGTGGGGAGTAAACAGGTGGTGGAGGAGAGTGGACAGGTGGCGGTGGAGAATGGACTGGTGGGGGTGGAGAGTAAACTGGTGGTGGCGGCGAATAGACAGGTGGTGGTGGAGAATAGACGGGGGGTGGTGGAGAGTGGACGGGAGGTGGTGGGGAGTAGACGGGAGGTGGTGGGGAGTAGACCGTGGAGGTGGAGATTGAACGGGTGGAGGTGGAGAGTGAACGGGTGGTGGTGGAGGTGGAGAGTGAACGGGAGGAGGTGGAGAGTGAACTGGTGGTGGAGGAGAAGAAACCGGTGGTGGTGGTGAGTGAACAGGAGGTGGAGGAGAGGATACCGGTGGTGGTGGTGAATGATAGGGGGTGGAGGAGAGTGGACAGGGGGTGGTGGGGAATGAACCGTGGTGGAGGGGAATGGATTAGTGGAAGGGAGATTCAGCCGGAGATGAAGTAG

mRNA sequence

ATGGTGGTGGTGAAGAATCGAGAGGGGGAGGAGGAGGAGATGCAGTCGGAGGTGGTGGAGATTGGACTGGTGGCGGTGGGGAGTAAACAGGTGGTGGAGGAGAGTGGACAGGTGGCGGTGGAGAATGGACTGGTGGGGGTGGAGAGTAAACTGGTGGTGGCGGCGAATAGACAGGTGGTGGTGGAGAATAGACGGGGGGTGGTGGAGAGTGGACGGGAGGTGGTGGGGAGTAGACGGGAGACCGTGGAGGTGGAGATTGAACGGGTGGAGGTGGAGAGTGAACGGGTGGTGGTGGAGGTGGAGAGTGAACGGGAGGAGGTGGAGAGTGAACTGGTGGTGGAGGAGAAGAAACCGGTGGTGGTGGTGAGTGAACAGGAGGTGGAGGAGAGGATACCGGTGGTGGTGGTGAATGATAGGGGGTGGAGGAGAGTGGACAGGGGGTGGTGGGGAATGAACCGTGGTGGAGGGGAATGGATTAGTGGAAGGGAGATTCAGCCGGAGATGAAGTAG

Coding sequence (CDS)

ATGGTGGTGGTGAAGAATCGAGAGGGGGAGGAGGAGGAGATGCAGTCGGAGGTGGTGGAGATTGGACTGGTGGCGGTGGGGAGTAAACAGGTGGTGGAGGAGAGTGGACAGGTGGCGGTGGAGAATGGACTGGTGGGGGTGGAGAGTAAACTGGTGGTGGCGGCGAATAGACAGGTGGTGGTGGAGAATAGACGGGGGGTGGTGGAGAGTGGACGGGAGGTGGTGGGGAGTAGACGGGAGACCGTGGAGGTGGAGATTGAACGGGTGGAGGTGGAGAGTGAACGGGTGGTGGTGGAGGTGGAGAGTGAACGGGAGGAGGTGGAGAGTGAACTGGTGGTGGAGGAGAAGAAACCGGTGGTGGTGGTGAGTGAACAGGAGGTGGAGGAGAGGATACCGGTGGTGGTGGTGAATGATAGGGGGTGGAGGAGAGTGGACAGGGGGTGGTGGGGAATGAACCGTGGTGGAGGGGAATGGATTAGTGGAAGGGAGATTCAGCCGGAGATGAAGTAG

Protein sequence

MVVVKNREGEEEEMQSEVVEIGLVAVGSKQVVEESGQVAVENGLVGVESKLVVAANRQVVVENRRGVVESGREVVGSRRETVEVEIERVEVESERVVVEVESEREEVESELVVEEKKPVVVVSEQEVEERIPVVVVNDRGWRRVDRGWWGMNRGGGEWISGREIQPEMK
Homology
BLAST of PI0015580 vs. ExPASy TrEMBL
Match: A0A0A0KA06 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G005180 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.8e-11
Identity = 62/102 (60.78%), Postives = 70/102 (68.63%), Query Frame = 0

Query: 1   MVVVKNREGEEEEMQSEVVEIGLVAVGSKQVVEESGQVAVENGLVGVESKLVVAANRQVV 60
           MVVVKNRE EEEEM  EVVEIGLV V S+QV  ES  V VE   V VES+ V   N    
Sbjct: 31  MVVVKNREEEEEEMTLEVVEIGLVVVESRQVAVESKLVVVEIEPVEVESRQVGVGNGLGG 90

Query: 61  VENRRGVVESGREVVGSRRETVEVEIERVEVESERVVVEVES 103
           VE+ RGVV SG+EVV SR+  V VE ++VEVESE V VE +S
Sbjct: 91  VESGRGVVGSGQEVVESRQ--VAVESKQVEVESESVEVERKS 130

BLAST of PI0015580 vs. ExPASy TrEMBL
Match: A8Y2T2 (Protein CBG22662 OS=Caenorhabditis briggsae OX=6238 GN=CBG22662 PE=4 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 2.0e-04
Identity = 65/127 (51.18%), Postives = 78/127 (61.42%), Query Frame = 0

Query: 8   EGEEEEMQSEVVEI--GLVAVGSKQVVEESGQVAVENGLVGVESKLVVAANRQVVVENRR 67
           E E  E++SE+VE+   LV V S+ V  ES  V VE+ LV VES+LV   +  V VE+  
Sbjct: 685 ESELVEVESELVEVESELVEVESELVEVESELVEVESELVEVESELVEVESELVEVESEL 744

Query: 68  GVVESGREVVGSRRETVEVEIERVEVESERVVVEVESEREEVESELVVEEKKPVVVVSE- 127
             VES  E+V    E VEVE E VEVESE  +VEVESE  EVESELV  E + V V SE 
Sbjct: 745 VEVES--ELVEVESELVEVESELVEVESE--LVEVESELVEVESELVEVESELVEVESEL 804

Query: 128 QEVEERI 132
            EVE  +
Sbjct: 805 VEVESEL 807

BLAST of PI0015580 vs. NCBI nr
Match: CAP39207.2 (Protein CBG22662 [Caenorhabditis briggsae])

HSP 1 Score: 55.8 bits (133), Expect = 4.1e-04
Identity = 65/127 (51.18%), Postives = 78/127 (61.42%), Query Frame = 0

Query: 8   EGEEEEMQSEVVEI--GLVAVGSKQVVEESGQVAVENGLVGVESKLVVAANRQVVVENRR 67
           E E  E++SE+VE+   LV V S+ V  ES  V VE+ LV VES+LV   +  V VE+  
Sbjct: 685 ESELVEVESELVEVESELVEVESELVEVESELVEVESELVEVESELVEVESELVEVESEL 744

Query: 68  GVVESGREVVGSRRETVEVEIERVEVESERVVVEVESEREEVESELVVEEKKPVVVVSE- 127
             VES  E+V    E VEVE E VEVESE  +VEVESE  EVESELV  E + V V SE 
Sbjct: 745 VEVES--ELVEVESELVEVESELVEVESE--LVEVESELVEVESELVEVESELVEVESEL 804

Query: 128 QEVEERI 132
            EVE  +
Sbjct: 805 VEVESEL 807

BLAST of PI0015580 vs. NCBI nr
Match: XP_002632808.1 (Hypothetical protein CBG22662 [Caenorhabditis briggsae])

HSP 1 Score: 55.8 bits (133), Expect = 4.1e-04
Identity = 65/127 (51.18%), Postives = 78/127 (61.42%), Query Frame = 0

Query: 8   EGEEEEMQSEVVEI--GLVAVGSKQVVEESGQVAVENGLVGVESKLVVAANRQVVVENRR 67
           E E  E++SE+VE+   LV V S+ V  ES  V VE+ LV VES+LV   +  V VE+  
Sbjct: 593 ESELVEVESELVEVESELVEVESELVEVESELVEVESELVEVESELVEVESELVEVESEL 652

Query: 68  GVVESGREVVGSRRETVEVEIERVEVESERVVVEVESEREEVESELVVEEKKPVVVVSE- 127
             VES  E+V    E VEVE E VEVESE  +VEVESE  EVESELV  E + V V SE 
Sbjct: 653 VEVES--ELVEVESELVEVESELVEVESE--LVEVESELVEVESELVEVESELVEVESEL 712

Query: 128 QEVEERI 132
            EVE  +
Sbjct: 713 VEVESEL 715

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KA064.8e-1160.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G005180 PE=4 SV=1[more]
A8Y2T22.0e-0451.18Protein CBG22662 OS=Caenorhabditis briggsae OX=6238 GN=CBG22662 PE=4 SV=2[more]
Match NameE-valueIdentityDescription
CAP39207.24.1e-0451.18Protein CBG22662 [Caenorhabditis briggsae][more]
XP_002632808.14.1e-0451.18Hypothetical protein CBG22662 [Caenorhabditis briggsae][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 86..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0015580.1PI0015580.1mRNA