PI0015514 (gene) Melon (PI 482460) v1

Overview
NamePI0015514
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRNA-directed DNA polymerase-like protein
Locationchr09: 15221082 .. 15222059 (+)
RNA-Seq ExpressionPI0015514
SyntenyPI0015514
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCTCAAGATGCGAGACATCATCAAAGTTCCTCATCTAGAGGAAACAAGAACAATTGTGCGAGTTCTCCATAAGCCAGTGGGGGAGATAAATGGTCTAGTGGTGATCGCAAGCCCTTCTAACCAAACACTGGGAACAAGGGACGGGGACAAAACCACCAAAATTCATACAATCATCCCTCTGCTTGTTACATATGTAAAGGACCACACCTGGTAAGAGAATGTCTGAATCGAACTGCCTTCAATGCCTCCTAGGCCGCCTTAACCTCAGACTCAGATGACAATTGCAGTTAAACAGAGGGCAAAGACGCTCAAACAGAAGAAAGTGATAATCCCGAAATGGGGGCCATGAAATTCCTATCGTCTCTCCAGAAGAAGATGGGATAGACAAGTGGGTCAATAGAAGGGGGTCTAATGTACGTTGACACCTGGATCAACTAGAAACTAACTAAGAGTACTATGGTTGATTCCGGTGTGACTCATAACTTCATTACAGAGACAGAAGCCAGGCGATTAATTCTTCACTAGGAGAAAGACATGGTAAAGATGAAGGTCGTAAACTTTGTTGTCCTACCTATCGTCAGAGTTGTAAAAAATTATTATAAGGTTGGGAGGATGGAATGGCTTGATAACTTGTAGAAATACAAGTTATTATAGCCTTTCAGGTAGAATAATGACGCAGTAATGCATAAAAATAGAGAAAATGGCACAAAATGATGAATGTAAAGGATAACTTGTATCGCAGATTATAAAAGAGCTTTATTCATATTTTACGCGTTTTATCATGTCTTATGCAGGTTTTCAAGGCAAAAAAAGAAGCAGCCATGTGAGCAAAATGTCAGGTGAGGAACCATGCGTGCAACTAGGCGTGCATCAATGCAAAGCTAGGCGATTCCGAGCACTAGCAGACAAACTAGTATGCGAAGATGTCAGAAAAGACACCTGCAACAATGTTGCGGTTTTATCAGAAGAATAA

mRNA sequence

ATGACTCTCAAGATGCGAGACATCATCAAAGTTCCTCATCTAGAGGAAACAAGAACAATTGTGCGAGTTCTCCATAAGCCAGTGGGGGAGATAAATGGTCTAGTGGTGATCGCAAGCCCTTCTAACCAAACACTGGGAACAAGGGACGGGGACAAAACCACCAAAATTCATACAATCATCCCTCTGCTTGTTACATATGTAAAGGACCACACCTGGTTTTCAAGGCAAAAAAAGAAGCAGCCATGCGTGCATCAATGCAAAGCTAGGCGATTCCGAGCACTAGCAGACAAACTAGTATGCGAAGATGTCAGAAAAGACACCTGCAACAATGTTGCGGTTTTATCAGAAGAATAA

Coding sequence (CDS)

ATGACTCTCAAGATGCGAGACATCATCAAAGTTCCTCATCTAGAGGAAACAAGAACAATTGTGCGAGTTCTCCATAAGCCAGTGGGGGAGATAAATGGTCTAGTGGTGATCGCAAGCCCTTCTAACCAAACACTGGGAACAAGGGACGGGGACAAAACCACCAAAATTCATACAATCATCCCTCTGCTTGTTACATATGTAAAGGACCACACCTGGTTTTCAAGGCAAAAAAAGAAGCAGCCATGCGTGCATCAATGCAAAGCTAGGCGATTCCGAGCACTAGCAGACAAACTAGTATGCGAAGATGTCAGAAAAGACACCTGCAACAATGTTGCGGTTTTATCAGAAGAATAA

Protein sequence

MTLKMRDIIKVPHLEETRTIVRVLHKPVGEINGLVVIASPSNQTLGTRDGDKTTKIHTIIPLLVTYVKDHTWFSRQKKKQPCVHQCKARRFRALADKLVCEDVRKDTCNNVAVLSEE
Homology
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BLAST of PI0015514 vs. ExPASy TrEMBL
Match: A0A5A7TFE9 (RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002910 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.9e-04
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 0 

Query: 1   MTLKMRDIIKVPHLEETRTIVRVLHKPVGEINGLVVIASPSNQTLGTRDGDKTTKIHTII 60
           MTL+M DII+VPHL E R I +VL K + E N L+ IA P+N+   T   D+ T++  I+
Sbjct: 153 MTLRMLDIIQVPHLGEIRIIAQVLPKLLEETNILMEIAGPTNRIQETPGEDQITRMCPIV 212

Query: 61  PLLVTY 67
             +V+Y
Sbjct: 213 LSVVSY 218

The following BLAST results are available for this feature:
BLAST of PI0015514 vs.
Match NameE-valueIdentityDescription
BLAST of PI0015514 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TFE98.9e-0445.45RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
BLAST of PI0015514 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
BLAST of PI0015514 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0015514.1PI0015514.1mRNA