PI0015454 (gene) Melon (PI 482460) v1

Overview


Name	PI0015454
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	ethylene-responsive transcription factor CRF6-like
Location	chr03: 19995363 .. 19996095 (-)
RNA-Seq Expression	PI0015454
Synteny	PI0015454

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCAACTCATTCTCGCTTCAAGTTCCGTGAACGCCGCTCCGTCACCGGAATCACTCTTCCGCCCGATTCCGCCGCCCCAAGGATCCTCCGCATCTTCGTCACCGACTCCGACGCCACCGATTCTTCCAGTAGCGACGACGACGACGACGCCCAACTCCTCCGCCTCGTCCGTCGCCACATCAACGAAATCCGCTTCCAAGATTCTACACACTCGAAGCCCAACGAAATCCAGCCGACCAAGAAATACCGCGGCGTGCGGCGGCGGCCCTGGGGGAAATTCGCGGCGGAGATTCGAGACCCGATTAAACGCACTAGAATCTGGCTAGGAACCTTTGATTCGCCTGAGGAAGCCGCAATCGTCTACGATCAAGCAGCGATTCGATTCCGAGGTCCTGATGCCTTAACGAACATCGTAAAGCCGCCGCAGAGGAACCTTCCGCCGGAGGAGATTTGTGATTCTTCAATGGAAATCGCCGACGACGGCGGAGGAATGCGTTGTTCTCCGACTTCGGTTCTGAGAGACGAGTATTGGAGCGCGACGGGGCGGCGGAACTGTTGGGAGATGAGATGGAGTTCATGGATAATTACTACCGGGCGCCGAGGATATTTCTGGAGGAAACGAGCTTACCGGAGACGACGATGTTTGTGGGGGTTTGTGCGAGGGTGCGGTGAATTTGGACGGAAATTTCGGGTCATGTAAATGGGATGTGGGGACCTGTTTTGAGTAA

mRNA sequence

ATGTCTTCAACTCATTCTCGCTTCAAGTTCCGTGAACGCCGCTCCGTCACCGGAATCACTCTTCCGCCCGATTCCGCCGCCCCAAGGATCCTCCGCATCTTCGTCACCGACTCCGACGCCACCGATTCTTCCAGTAGCGACGACGACGACGACGCCCAACTCCTCCGCCTCGTCCGTCGCCACATCAACGAAATCCGCTTCCAAGATTCTACACACTCGAAGCCCAACGAAATCCAGCCGACCAAGAAATACCGCGGCGTGCGGCGGCGGCCCTGGGGGAAATTCGCGGCGGAGATTCGAGACCCGATTAAACGCACTAGAATCTGGCTAGGAACCTTTGATTCGCCTGAGGAAGCCGCAATCGTCTACGATCAAGCAGCGATTCGATTCCGAGGTCCTGATGCCTTAACGAACATCGTAAAGCCGCCGCAGAGGAACCTTCCGCCGGAGGAGATTTGTGATTCTTCAATGGAAATCGCCGACGACGGCGGAGGAATGCGTTGTTCTCCGACTTCGGTTCTGAGAGACGAGTATTGGAGCGCGACGGGGCGGCGGAACTACGACGATGTTTGTGGGGGTTTGTGCGAGGGTGCGGTGAATTTGGACGGAAATTTCGGGTCATGTAAATGGGATGTGGGGACCTGTTTTGAGTAA

Coding sequence (CDS)

ATGTCTTCAACTCATTCTCGCTTCAAGTTCCGTGAACGCCGCTCCGTCACCGGAATCACTCTTCCGCCCGATTCCGCCGCCCCAAGGATCCTCCGCATCTTCGTCACCGACTCCGACGCCACCGATTCTTCCAGTAGCGACGACGACGACGACGCCCAACTCCTCCGCCTCGTCCGTCGCCACATCAACGAAATCCGCTTCCAAGATTCTACACACTCGAAGCCCAACGAAATCCAGCCGACCAAGAAATACCGCGGCGTGCGGCGGCGGCCCTGGGGGAAATTCGCGGCGGAGATTCGAGACCCGATTAAACGCACTAGAATCTGGCTAGGAACCTTTGATTCGCCTGAGGAAGCCGCAATCGTCTACGATCAAGCAGCGATTCGATTCCGAGGTCCTGATGCCTTAACGAACATCGTAAAGCCGCCGCAGAGGAACCTTCCGCCGGAGGAGATTTGTGATTCTTCAATGGAAATCGCCGACGACGGCGGAGGAATGCGTTGTTCTCCGACTTCGGTTCTGAGAGACGAGTATTGGAGCGCGACGGGGCGGCGGAACTACGACGATGTTTGTGGGGGTTTGTGCGAGGGTGCGGTGAATTTGGACGGAAATTTCGGGTCATGTAAATGGGATGTGGGGACCTGTTTTGAGTAA

Protein sequence

MSSTHSRFKFRERRSVTGITLPPDSAAPRILRIFVTDSDATDSSSSDDDDDAQLLRLVRRHINEIRFQDSTHSKPNEIQPTKKYRGVRRRPWGKFAAEIRDPIKRTRIWLGTFDSPEEAAIVYDQAAIRFRGPDALTNIVKPPQRNLPPEEICDSSMEIADDGGGMRCSPTSVLRDEYWSATGRRNYDDVCGGLCEGAVNLDGNFGSCKWDVGTCFE

Homology

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BLAST of PI0015454 vs. ExPASy Swiss-Prot
Match: Q9M374 (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana OX=3702 GN=CRF6 PE=1 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.7e-35
Identity = 91/195 (46.67%), Postives = 117/195 (60.00%), Query Frame = 0


Query: 7   RFKFRERRSVTGITLPPDSAAPRILRIFVTDSDATDSSSSDDD-DDAQLLRLVRRHINEI 66
           R KF E R+VT +   P + +PR++RI VTD  ATDSSS DDD ++  ++  V+R++ EI
Sbjct: 7   RVKFTENRTVTNVAATPSNGSPRLVRITVTDPFATDSSSDDDDNNNVTVVPRVKRYVKEI 66

Query: 67  RF-----QDSTHSKPNE----------------IQPTKKYRGVRRRPWGKFAAEIRDPIK 126
           RF       ST ++  +                ++P KKYRGVR+RPWGKFAAEIRDP  
Sbjct: 67  RFCQGESSSSTAARKGKHKEEESVVVEDDVSTSVKP-KKYRGVRQRPWGKFAAEIRDPSS 126

Query: 127 RTRIWLGTFDSPEEAAIVYDQAAIRFRGPDALTNIVKPPQRNLPPEEICD----SSMEIA 176
           RTRIWLGTF + EEAAI YD+AAI  +GP ALTN + PP     P  + D    S+ +  
Sbjct: 127 RTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNFLTPP----TPTPVIDLQTVSACDYG 186

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BLAST of PI0015454 vs. ExPASy Swiss-Prot
Match: O82339 (Ethylene-responsive transcription factor CRF5 OS=Arabidopsis thaliana OX=3702 GN=CRF5 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.2e-31
Identity = 85/201 (42.29%), Postives = 113/201 (56.22%), Query Frame = 0


Query: 1   MSSTHSRFKFRERRSVTGITLPPDSAAPRILRIFVTDSDATDSSSSDDDDDAQLLRLVRR 60
           M S   + K+   R +T     P    P+I++I VTD  ATDSSS +++D+  +   V+R
Sbjct: 1   MKSRVRKSKYTVHRKITS---TPFDGFPKIVKIIVTDPCATDSSSDEENDNKSVAPRVKR 60

Query: 61  HINEIRFQD-STHSKP-----------------NEIQPTKKYRGVRRRPWGKFAAEIRDP 120
           +++EIRF D     KP                 + ++   KYRGVR+RPWGKFAAEIRDP
Sbjct: 61  YVDEIRFCDEDDEPKPARKAKKKSPAAAAENGGDLVKSVVKYRGVRQRPWGKFAAEIRDP 120

Query: 121 IKRTRIWLGTFDSPEEAAIVYDQAAIRFRGPDALTNIVKPP----QRNLPPEEICD---- 176
             RTR+WLGTF + EEAAI YD+AAIR +G +A TN + PP       LP   + D    
Sbjct: 121 SSRTRLWLGTFATAEEAAIGYDRAAIRIKGHNAQTNFLTPPPSPTTEVLPETPVIDLETV 180

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BLAST of PI0015454 vs. ExPASy Swiss-Prot
Match: O04682 (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum OX=4081 GN=PTI6 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-30
Identity = 75/168 (44.64%), Postives = 104/168 (61.90%), Query Frame = 0


Query: 24  DSAAPRILRIFVTDSDATDSSSSDDDDDAQLLRLVRRHINEIRFQDSTHS----KPNEIQ 83
           +S   R++RI +TD+DATDSS   DD+    +R V+RH+ EI    ST S    K   + 
Sbjct: 31  NSELQRVVRIILTDADATDSS---DDEGRNTVRRVKRHVTEINLMPSTKSIGDRKRRSVS 90

Query: 84  P------TKKYRGVRRRPWGKFAAEIRDPIKRTRIWLGTFDSPEEAAIVYDQAAIRFRGP 143
           P       KK+RGVR+RPWG++AAEIRDP +  R+WLGT+D+PEEAA+VYD+AA++ +GP
Sbjct: 91  PDSDVTRRKKFRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVKLKGP 150

Query: 144 DALTNIVKPPQRNLPPEEICDSSMEIADDGG-----GMRCSPTSVLRD 177
           DA+TN        +    + ++  E   DGG      +  SPTSVL D
Sbjct: 151 DAVTNFPVSTTAEV-TVTVTETETESVADGGDKSENDVALSPTSVLCD 194

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BLAST of PI0015454 vs. ExPASy Swiss-Prot
Match: Q9SUE3 (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana OX=3702 GN=CRF4 PE=1 SV=2)

HSP 1 Score: 132.5 bits (332), Expect = 5.8e-30
Identity = 89/195 (45.64%), Postives = 112/195 (57.44%), Query Frame = 0


Query: 9   KFRERRSVTGITLPPDSAAPRILRIFVTDSDATDSSSSDDDDDAQLLRLVRRHINEIRFQ 68
           K+ ++ S+   T   DSA  R++R+ +TD DATD SSSD+++     R V+R INEIR +
Sbjct: 23  KYTKKSSMERKTSVRDSA--RLVRVSMTDRDATD-SSSDEEEFLFPRRRVKRLINEIRVE 82

Query: 69  ----------------------DSTHSKPN-EIQPTKKYRGVRRRPWGKFAAEIRDPIKR 128
                                 DST  KP+   Q  KKYRGVR+RPWGK+AAEIRDP +R
Sbjct: 83  PSSSSTGDVSASPTKDRKRINVDSTVQKPSVSGQNQKKYRGVRQRPWGKWAAEIRDPEQR 142

Query: 129 TRIWLGTFDSPEEAAIVYDQAAIRFRGPDALTNIVKPP------QRNLPPEEICDSSMEI 175
            RIWLGTF + EEAAIVYD AAI+ RGPDALTN    P      ++   PE     S+  
Sbjct: 143 RRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNFTVQPEPEPVQEQEQEPESNMSVSISE 202

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BLAST of PI0015454 vs. ExPASy Swiss-Prot
Match: Q9SUQ2 (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana OX=3702 GN=CRF2 PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.4e-28
Identity = 83/225 (36.89%), Postives = 115/225 (51.11%), Query Frame = 0


Query: 7   RFKFRERR--SVTGITLPPDSAAPRILRIFVTDSDATDSSSSDDDDDAQLL----RLVRR 66
           R KF E +  + T ++   ++   RILRI VTD DATDSSS D++++ Q      R V++
Sbjct: 11  RIKFTEHKTNTTTIVSELTNTHQTRILRISVTDPDATDSSSDDEEEEHQRFVSKRRRVKK 70

Query: 67  HINEI------------------RFQDSTHSKPNEIQPT----------KKYRGVRRRPW 126
            +NE+                  + Q       + + P           KK+RGVR+RPW
Sbjct: 71  FVNEVYLDSGAVVTGSCGQMESKKRQKRAVKSESTVSPVVSATTTTTGEKKFRGVRQRPW 130

Query: 127 GKFAAEIRDPIKRTRIWLGTFDSPEEAAIVYDQAAIRFRGPDALTNIVKPP----QRNLP 179
           GK+AAEIRDP+KR R+WLGT+++ EEAA+VYD AAI+ RGPDALTN    P    ++  P
Sbjct: 131 GKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNFSVTPTTATEKKAP 190

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BLAST of PI0015454 vs. ExPASy TrEMBL
Match: A0A5A7SSM5 (Ethylene-responsive transcription factor CRF6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold269G00880 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 2.7e-107
Identity = 200/242 (82.64%), Postives = 209/242 (86.36%), Query Frame = 0


Query: 1   MSSTHSRFKFRERRSVTGITLPPDSAAPRILRIFVTDSDATDSSSS-DDDDDAQLLRLVR 60
           MSSTHSRFKFRERRSVTGITLPPDSAAPRILRIFVTDSDATD+SSS DDDDDAQLLRLVR
Sbjct: 1   MSSTHSRFKFRERRSVTGITLPPDSAAPRILRIFVTDSDATDTSSSDDDDDDAQLLRLVR 60

Query: 61  RHINEIRFQDSTHSKPNEIQPTKKYRGVRRRPWGKFAAEIRDPIKRTRIWLGTFDSPEEA 120
           RHINEI F DSTHSKPNE+QPTKK+RGVRRRPWGKFAAEIRDPIKRTRIWLGTFDSPEEA
Sbjct: 61  RHINEIHFHDSTHSKPNELQPTKKFRGVRRRPWGKFAAEIRDPIKRTRIWLGTFDSPEEA 120

Query: 121 AIVYDQAAIRFRGPDALTNIVKPPQRNLPPEEICDSSMEIADDGGGMRCSPTSVLRDEYW 180
           AIVYDQAAIRFRGPDALTNI+KPPQRNLPPEEICDSSMEIA+DGGGMRCSPTSVLRD+YW
Sbjct: 121 AIVYDQAAIRFRGPDALTNIIKPPQRNLPPEEICDSSMEIAEDGGGMRCSPTSVLRDDYW 180

Query: 181 SAT---------------------GRRNYDDV---CGGLCEGAVNLDGNFGSCKWDVGTC 218
           SAT                       R+  +    CGGL EGAV+LDGNFGSCKWDVGTC
Sbjct: 181 SATELLGDEMEFMDNYYGAPRIFVEERSIPETAMFCGGLWEGAVDLDGNFGSCKWDVGTC 240

[Close]

BLAST of PI0015454 vs. ExPASy TrEMBL
Match: A0A1S3BE80 (ethylene-responsive transcription factor CRF6-like OS=Cucumis melo OX=3656 GN=LOC103488716 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 2.7e-107
Identity = 200/242 (82.64%), Postives = 209/242 (86.36%), Query Frame = 0


Query: 1   MSSTHSRFKFRERRSVTGITLPPDSAAPRILRIFVTDSDATDSSSS-DDDDDAQLLRLVR 60
           MSSTHSRFKFRERRSVTGITLPPDSAAPRILRIFVTDSDATD+SSS DDDDDAQLLRLVR
Sbjct: 1   MSSTHSRFKFRERRSVTGITLPPDSAAPRILRIFVTDSDATDTSSSDDDDDDAQLLRLVR 60

Query: 61  RHINEIRFQDSTHSKPNEIQPTKKYRGVRRRPWGKFAAEIRDPIKRTRIWLGTFDSPEEA 120
           RHINEI F DSTHSKPNE+QPTKK+RGVRRRPWGKFAAEIRDPIKRTRIWLGTFDSPEEA
Sbjct: 61  RHINEIHFHDSTHSKPNELQPTKKFRGVRRRPWGKFAAEIRDPIKRTRIWLGTFDSPEEA 120

Query: 121 AIVYDQAAIRFRGPDALTNIVKPPQRNLPPEEICDSSMEIADDGGGMRCSPTSVLRDEYW 180
           AIVYDQAAIRFRGPDALTNI+KPPQRNLPPEEICDSSMEIA+DGGGMRCSPTSVLRD+YW
Sbjct: 121 AIVYDQAAIRFRGPDALTNIIKPPQRNLPPEEICDSSMEIAEDGGGMRCSPTSVLRDDYW 180

Query: 181 SAT---------------------GRRNYDDV---CGGLCEGAVNLDGNFGSCKWDVGTC 218
           SAT                       R+  +    CGGL EGAV+LDGNFGSCKWDVGTC
Sbjct: 181 SATELLGDEMEFMDNYYGAPRIFVEERSIPETAMFCGGLWEGAVDLDGNFGSCKWDVGTC 240

[Close]

BLAST of PI0015454 vs. ExPASy TrEMBL
Match: A0A0A0KE47 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G042450 PE=4 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.5e-102
Identity = 194/243 (79.84%), Postives = 202/243 (83.13%), Query Frame = 0


Query: 1   MSSTHSRFKFRERRSVTGITLPPDSAAPRILRIFVTDSDATDSSSSDDD--DDAQLLRLV 60
           MSS HSRFKFRERRSVTGITLPPD AAPRILRIFVTDSDATD+SSSDDD  DDA LLRLV
Sbjct: 1   MSSAHSRFKFRERRSVTGITLPPDYAAPRILRIFVTDSDATDTSSSDDDDNDDAHLLRLV 60

Query: 61  RRHINEIRFQDSTHSKPNEIQPTKKYRGVRRRPWGKFAAEIRDPIKRTRIWLGTFDSPEE 120
           RRHINEIRF DSTHSKPNEI PTKK+RGVRRRPWGKFAAEIRDPIKRTRIWLGTFDSPEE
Sbjct: 61  RRHINEIRFHDSTHSKPNEIPPTKKFRGVRRRPWGKFAAEIRDPIKRTRIWLGTFDSPEE 120

Query: 121 AAIVYDQAAIRFRGPDALTNIVKPPQRNLPPEEICDSSMEIADDGGGMRCSPTSVLRDEY 180
           AAIVYDQAAIRFRGPDALTNIVKPP RN+P EEICDSSMEI +DGGGMRCSPTSVLRDEY
Sbjct: 121 AAIVYDQAAIRFRGPDALTNIVKPPPRNVPAEEICDSSMEITEDGGGMRCSPTSVLRDEY 180

Query: 181 WSAT---------------------GRRNYDDV---CGGLCEGAVNLDGNFGSCKWDVGT 218
           W AT                       R+  +    CGGL EG+V+LDGNFGSCKWDVGT
Sbjct: 181 WRATEVLGDEMELMDNYYRAPRIFVEERSLPETAMFCGGLWEGSVDLDGNFGSCKWDVGT 240

[Close]

BLAST of PI0015454 vs. ExPASy TrEMBL
Match: A0A6J1DA05 (ethylene-responsive transcription factor CRF2-like OS=Momordica charantia OX=3673 GN=LOC111018582 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 8.3e-48
Identity = 126/258 (48.84%), Postives = 154/258 (59.69%), Query Frame = 0


Query: 1   MSSTHSRFKFRERRSVTGITLPPDSAAPRILRIFVTDSDATDSSSSDDDDDAQLLRLVRR 60
           M+S +SR +FRERRSVTG  L       RI+RI VTD+DATD+SS    ++++ +R V R
Sbjct: 1   MTSIYSRVRFRERRSVTG-KLLRQLPGTRIVRISVTDADATDTSSG---EESEFVRRVSR 60

Query: 61  HINEIRFQDSTHSKPNEIQ-----PTK------KYRGVRRRPWGKFAAEIRDPIKRTRIW 120
            +NEIRF D +  K    +     P K      K+R VRRR WGK+AAEIRDPIKR R+W
Sbjct: 61  RVNEIRFDDFSSPKQRTAKQGRDFPAKGESGGMKFRCVRRRQWGKWAAEIRDPIKRARVW 120

Query: 121 LGTFDSPEEAAIVYDQAAIRFRGPDALTNIVKPPQRNLPPEEICDSSMEIADDGGGMRCS 180
           LGTFDSPEEAA+VYD+AAI+FRGPDALTNIVKPP+RN PP E   +S +   D      S
Sbjct: 121 LGTFDSPEEAAMVYDRAAIQFRGPDALTNIVKPPERNPPPPE---NSSDCGYD------S 180

Query: 181 PTSVLRD-EYWSATGRRNYDDV---------C--------------------GGLCEGAV 218
           PTSVLR    WSA      D+          C                    GG C+G  
Sbjct: 181 PTSVLRSPPEWSAAEEFVGDEFEFLDQRFVECHRPAPIFLEETSVPETAIWGGGFCDGPA 240

[Close]

BLAST of PI0015454 vs. ExPASy TrEMBL
Match: A0A2P5YTL8 (AP2/ERF domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA01665 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 3.9e-37
Identity = 96/188 (51.06%), Postives = 120/188 (63.83%), Query Frame = 0


Query: 7   RFKFRERRSVTGITLPPDS---------AAPRILRIFVTDSDATDSSSSDDDDDAQLLRL 66
           R K+ ERR+VT + L   S          APRI+RI VTD DATDSSS  D+ + +    
Sbjct: 5   RVKYTERRTVTNMLLKASSKWFPMESKPKAPRIVRISVTDGDATDSSS--DESEQERHHT 64

Query: 67  VRRHINEIRFQD-------STHSKPNE--IQPTKKYRGVRRRPWGKFAAEIRDPIKRTRI 126
           V+RH++EIR  D        T +K N      T  YRGVR+RPWG++AAEIRDP  RTR+
Sbjct: 65  VKRHVSEIRIGDRSTFNSNKTSNKQNRPTNNKTNLYRGVRQRPWGRWAAEIRDPTSRTRV 124

Query: 127 WLGTFDSPEEAAIVYDQAAIRFRGPDALTNIVKPPQRNLPPE-EICDSSMEIADDGGGMR 176
           WLGT+D+ EEAA+VYD+AAIR +GPDALTN +KPP R  PPE E+  +S   +       
Sbjct: 125 WLGTYDTAEEAALVYDRAAIRIKGPDALTNFIKPPARPSPPEIELEMTSGYDSGQESHSL 184

[Close]

BLAST of PI0015454 vs. NCBI nr
Match: XP_008445792.1 (PREDICTED: ethylene-responsive transcription factor CRF6-like [Cucumis melo] >KAA0032996.1 ethylene-responsive transcription factor CRF6-like [Cucumis melo var. makuwa])

HSP 1 Score: 397.9 bits (1021), Expect = 5.6e-107
Identity = 200/242 (82.64%), Postives = 209/242 (86.36%), Query Frame = 0


Query: 1   MSSTHSRFKFRERRSVTGITLPPDSAAPRILRIFVTDSDATDSSSS-DDDDDAQLLRLVR 60
           MSSTHSRFKFRERRSVTGITLPPDSAAPRILRIFVTDSDATD+SSS DDDDDAQLLRLVR
Sbjct: 1   MSSTHSRFKFRERRSVTGITLPPDSAAPRILRIFVTDSDATDTSSSDDDDDDAQLLRLVR 60

Query: 61  RHINEIRFQDSTHSKPNEIQPTKKYRGVRRRPWGKFAAEIRDPIKRTRIWLGTFDSPEEA 120
           RHINEI F DSTHSKPNE+QPTKK+RGVRRRPWGKFAAEIRDPIKRTRIWLGTFDSPEEA
Sbjct: 61  RHINEIHFHDSTHSKPNELQPTKKFRGVRRRPWGKFAAEIRDPIKRTRIWLGTFDSPEEA 120

Query: 121 AIVYDQAAIRFRGPDALTNIVKPPQRNLPPEEICDSSMEIADDGGGMRCSPTSVLRDEYW 180
           AIVYDQAAIRFRGPDALTNI+KPPQRNLPPEEICDSSMEIA+DGGGMRCSPTSVLRD+YW
Sbjct: 121 AIVYDQAAIRFRGPDALTNIIKPPQRNLPPEEICDSSMEIAEDGGGMRCSPTSVLRDDYW 180

Query: 181 SAT---------------------GRRNYDDV---CGGLCEGAVNLDGNFGSCKWDVGTC 218
           SAT                       R+  +    CGGL EGAV+LDGNFGSCKWDVGTC
Sbjct: 181 SATELLGDEMEFMDNYYGAPRIFVEERSIPETAMFCGGLWEGAVDLDGNFGSCKWDVGTC 240

[Close]

BLAST of PI0015454 vs. NCBI nr
Match: XP_011656563.1 (ethylene-responsive transcription factor CRF6 [Cucumis sativus] >KGN46011.1 hypothetical protein Csa_005043 [Cucumis sativus])

HSP 1 Score: 382.1 bits (980), Expect = 3.2e-102
Identity = 194/243 (79.84%), Postives = 202/243 (83.13%), Query Frame = 0


Query: 1   MSSTHSRFKFRERRSVTGITLPPDSAAPRILRIFVTDSDATDSSSSDDD--DDAQLLRLV 60
           MSS HSRFKFRERRSVTGITLPPD AAPRILRIFVTDSDATD+SSSDDD  DDA LLRLV
Sbjct: 1   MSSAHSRFKFRERRSVTGITLPPDYAAPRILRIFVTDSDATDTSSSDDDDNDDAHLLRLV 60

Query: 61  RRHINEIRFQDSTHSKPNEIQPTKKYRGVRRRPWGKFAAEIRDPIKRTRIWLGTFDSPEE 120
           RRHINEIRF DSTHSKPNEI PTKK+RGVRRRPWGKFAAEIRDPIKRTRIWLGTFDSPEE
Sbjct: 61  RRHINEIRFHDSTHSKPNEIPPTKKFRGVRRRPWGKFAAEIRDPIKRTRIWLGTFDSPEE 120

Query: 121 AAIVYDQAAIRFRGPDALTNIVKPPQRNLPPEEICDSSMEIADDGGGMRCSPTSVLRDEY 180
           AAIVYDQAAIRFRGPDALTNIVKPP RN+P EEICDSSMEI +DGGGMRCSPTSVLRDEY
Sbjct: 121 AAIVYDQAAIRFRGPDALTNIVKPPPRNVPAEEICDSSMEITEDGGGMRCSPTSVLRDEY 180

Query: 181 WSAT---------------------GRRNYDDV---CGGLCEGAVNLDGNFGSCKWDVGT 218
           W AT                       R+  +    CGGL EG+V+LDGNFGSCKWDVGT
Sbjct: 181 WRATEVLGDEMELMDNYYRAPRIFVEERSLPETAMFCGGLWEGSVDLDGNFGSCKWDVGT 240

[Close]

BLAST of PI0015454 vs. NCBI nr
Match: XP_038886548.1 (ethylene-responsive transcription factor CRF6-like [Benincasa hispida])

HSP 1 Score: 332.4 bits (851), Expect = 2.9e-87
Identity = 172/249 (69.08%), Postives = 189/249 (75.90%), Query Frame = 0


Query: 1   MSSTHSRFKFRERRSVTGITLPPDSAAPRILRIFVTDSDATDSSSSDDDD-DAQLLRLVR 60
           MSST SRFKFRERRSVTG++LP DS APRI+RI VTDSDATD+SSSDDDD DAQL+RLV 
Sbjct: 1   MSSTQSRFKFRERRSVTGMSLPADSTAPRIVRILVTDSDATDTSSSDDDDNDAQLVRLVS 60

Query: 61  RHINEIRFQDSTHSKPNEIQPTKKYRGVRRRPWGKFAAEIRDPIKRTRIWLGTFDSPEEA 120
           RHINEI   +STHSK  E++P KK+RGVRRRPWGKFAAEIRDP KRTRIWLGT+DSPEEA
Sbjct: 61  RHINEIHLHNSTHSKLKEVKPIKKFRGVRRRPWGKFAAEIRDPNKRTRIWLGTYDSPEEA 120

Query: 121 AIVYDQAAIRFRGPDALTNIVKPPQRNLPPEEICDSSMEIADD-----GGGMRCSPTSVL 180
           AIVYDQAAIRFRGPDALTNI+KPPQRN PPEEI DSSM+I DD     GGGM  SPTS+L
Sbjct: 121 AIVYDQAAIRFRGPDALTNILKPPQRNPPPEEIYDSSMQITDDLSAVSGGGMWFSPTSIL 180

Query: 181 RDEYWSATGRRNYDD--------------------------VCGGLCEGAVNLDGNFGSC 218
           RD+ W+A       D                           CGG C+GAV+LDGNFGSC
Sbjct: 181 RDDDWNAAAAEMLGDEMELMDYYYRPPRIFLEETSFPEMAMFCGGFCDGAVDLDGNFGSC 240

[Close]

BLAST of PI0015454 vs. NCBI nr
Match: XP_022150419.1 (ethylene-responsive transcription factor CRF2-like [Momordica charantia])

HSP 1 Score: 200.3 bits (508), Expect = 1.7e-47
Identity = 126/258 (48.84%), Postives = 154/258 (59.69%), Query Frame = 0


Query: 1   MSSTHSRFKFRERRSVTGITLPPDSAAPRILRIFVTDSDATDSSSSDDDDDAQLLRLVRR 60
           M+S +SR +FRERRSVTG  L       RI+RI VTD+DATD+SS    ++++ +R V R
Sbjct: 1   MTSIYSRVRFRERRSVTG-KLLRQLPGTRIVRISVTDADATDTSSG---EESEFVRRVSR 60

Query: 61  HINEIRFQDSTHSKPNEIQ-----PTK------KYRGVRRRPWGKFAAEIRDPIKRTRIW 120
            +NEIRF D +  K    +     P K      K+R VRRR WGK+AAEIRDPIKR R+W
Sbjct: 61  RVNEIRFDDFSSPKQRTAKQGRDFPAKGESGGMKFRCVRRRQWGKWAAEIRDPIKRARVW 120

Query: 121 LGTFDSPEEAAIVYDQAAIRFRGPDALTNIVKPPQRNLPPEEICDSSMEIADDGGGMRCS 180
           LGTFDSPEEAA+VYD+AAI+FRGPDALTNIVKPP+RN PP E   +S +   D      S
Sbjct: 121 LGTFDSPEEAAMVYDRAAIQFRGPDALTNIVKPPERNPPPPE---NSSDCGYD------S 180

Query: 181 PTSVLRD-EYWSATGRRNYDDV---------C--------------------GGLCEGAV 218
           PTSVLR    WSA      D+          C                    GG C+G  
Sbjct: 181 PTSVLRSPPEWSAAEEFVGDEFEFLDQRFVECHRPAPIFLEETSVPETAIWGGGFCDGPA 240

[Close]

BLAST of PI0015454 vs. NCBI nr
Match: PPS18926.1 (hypothetical protein GOBAR_AA01665 [Gossypium barbadense])

HSP 1 Score: 164.9 bits (416), Expect = 8.0e-37
Identity = 96/188 (51.06%), Postives = 120/188 (63.83%), Query Frame = 0


Query: 7   RFKFRERRSVTGITLPPDS---------AAPRILRIFVTDSDATDSSSSDDDDDAQLLRL 66
           R K+ ERR+VT + L   S          APRI+RI VTD DATDSSS  D+ + +    
Sbjct: 5   RVKYTERRTVTNMLLKASSKWFPMESKPKAPRIVRISVTDGDATDSSS--DESEQERHHT 64

Query: 67  VRRHINEIRFQD-------STHSKPNE--IQPTKKYRGVRRRPWGKFAAEIRDPIKRTRI 126
           V+RH++EIR  D        T +K N      T  YRGVR+RPWG++AAEIRDP  RTR+
Sbjct: 65  VKRHVSEIRIGDRSTFNSNKTSNKQNRPTNNKTNLYRGVRQRPWGRWAAEIRDPTSRTRV 124

Query: 127 WLGTFDSPEEAAIVYDQAAIRFRGPDALTNIVKPPQRNLPPE-EICDSSMEIADDGGGMR 176
           WLGT+D+ EEAA+VYD+AAIR +GPDALTN +KPP R  PPE E+  +S   +       
Sbjct: 125 WLGTYDTAEEAALVYDRAAIRIKGPDALTNFIKPPARPSPPEIELEMTSGYDSGQESHSL 184

[Close]

BLAST of PI0015454 vs. TAIR 10
Match: AT3G61630.1 (cytokinin response factor 6 )

HSP 1 Score: 150.2 bits (378), Expect = 1.9e-36
Identity = 91/195 (46.67%), Postives = 117/195 (60.00%), Query Frame = 0


Query: 7   RFKFRERRSVTGITLPPDSAAPRILRIFVTDSDATDSSSSDDD-DDAQLLRLVRRHINEI 66
           R KF E R+VT +   P + +PR++RI VTD  ATDSSS DDD ++  ++  V+R++ EI
Sbjct: 7   RVKFTENRTVTNVAATPSNGSPRLVRITVTDPFATDSSSDDDDNNNVTVVPRVKRYVKEI 66

Query: 67  RF-----QDSTHSKPNE----------------IQPTKKYRGVRRRPWGKFAAEIRDPIK 126
           RF       ST ++  +                ++P KKYRGVR+RPWGKFAAEIRDP  
Sbjct: 67  RFCQGESSSSTAARKGKHKEEESVVVEDDVSTSVKP-KKYRGVRQRPWGKFAAEIRDPSS 126

Query: 127 RTRIWLGTFDSPEEAAIVYDQAAIRFRGPDALTNIVKPPQRNLPPEEICD----SSMEIA 176
           RTRIWLGTF + EEAAI YD+AAI  +GP ALTN + PP     P  + D    S+ +  
Sbjct: 127 RTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNFLTPP----TPTPVIDLQTVSACDYG 186

[Close]

BLAST of PI0015454 vs. TAIR 10
Match: AT2G46310.1 (cytokinin response factor 5 )

HSP 1 Score: 136.0 bits (341), Expect = 3.7e-32
Identity = 85/201 (42.29%), Postives = 113/201 (56.22%), Query Frame = 0


Query: 1   MSSTHSRFKFRERRSVTGITLPPDSAAPRILRIFVTDSDATDSSSSDDDDDAQLLRLVRR 60
           M S   + K+   R +T     P    P+I++I VTD  ATDSSS +++D+  +   V+R
Sbjct: 1   MKSRVRKSKYTVHRKITS---TPFDGFPKIVKIIVTDPCATDSSSDEENDNKSVAPRVKR 60

Query: 61  HINEIRFQD-STHSKP-----------------NEIQPTKKYRGVRRRPWGKFAAEIRDP 120
           +++EIRF D     KP                 + ++   KYRGVR+RPWGKFAAEIRDP
Sbjct: 61  YVDEIRFCDEDDEPKPARKAKKKSPAAAAENGGDLVKSVVKYRGVRQRPWGKFAAEIRDP 120

Query: 121 IKRTRIWLGTFDSPEEAAIVYDQAAIRFRGPDALTNIVKPP----QRNLPPEEICD---- 176
             RTR+WLGTF + EEAAI YD+AAIR +G +A TN + PP       LP   + D    
Sbjct: 121 SSRTRLWLGTFATAEEAAIGYDRAAIRIKGHNAQTNFLTPPPSPTTEVLPETPVIDLETV 180

[Close]

BLAST of PI0015454 vs. TAIR 10
Match: AT4G27950.1 (cytokinin response factor 4 )

HSP 1 Score: 132.5 bits (332), Expect = 4.1e-31
Identity = 89/195 (45.64%), Postives = 112/195 (57.44%), Query Frame = 0


Query: 9   KFRERRSVTGITLPPDSAAPRILRIFVTDSDATDSSSSDDDDDAQLLRLVRRHINEIRFQ 68
           K+ ++ S+   T   DSA  R++R+ +TD DATD SSSD+++     R V+R INEIR +
Sbjct: 23  KYTKKSSMERKTSVRDSA--RLVRVSMTDRDATD-SSSDEEEFLFPRRRVKRLINEIRVE 82

Query: 69  ----------------------DSTHSKPN-EIQPTKKYRGVRRRPWGKFAAEIRDPIKR 128
                                 DST  KP+   Q  KKYRGVR+RPWGK+AAEIRDP +R
Sbjct: 83  PSSSSTGDVSASPTKDRKRINVDSTVQKPSVSGQNQKKYRGVRQRPWGKWAAEIRDPEQR 142

Query: 129 TRIWLGTFDSPEEAAIVYDQAAIRFRGPDALTNIVKPP------QRNLPPEEICDSSMEI 175
            RIWLGTF + EEAAIVYD AAI+ RGPDALTN    P      ++   PE     S+  
Sbjct: 143 RRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNFTVQPEPEPVQEQEQEPESNMSVSISE 202

[Close]

BLAST of PI0015454 vs. TAIR 10
Match: AT4G23750.1 (cytokinin response factor 2 )

HSP 1 Score: 127.1 bits (318), Expect = 1.7e-29
Identity = 83/225 (36.89%), Postives = 115/225 (51.11%), Query Frame = 0


Query: 7   RFKFRERR--SVTGITLPPDSAAPRILRIFVTDSDATDSSSSDDDDDAQLL----RLVRR 66
           R KF E +  + T ++   ++   RILRI VTD DATDSSS D++++ Q      R V++
Sbjct: 11  RIKFTEHKTNTTTIVSELTNTHQTRILRISVTDPDATDSSSDDEEEEHQRFVSKRRRVKK 70

Query: 67  HINEI------------------RFQDSTHSKPNEIQPT----------KKYRGVRRRPW 126
            +NE+                  + Q       + + P           KK+RGVR+RPW
Sbjct: 71  FVNEVYLDSGAVVTGSCGQMESKKRQKRAVKSESTVSPVVSATTTTTGEKKFRGVRQRPW 130

Query: 127 GKFAAEIRDPIKRTRIWLGTFDSPEEAAIVYDQAAIRFRGPDALTNIVKPP----QRNLP 179
           GK+AAEIRDP+KR R+WLGT+++ EEAA+VYD AAI+ RGPDALTN    P    ++  P
Sbjct: 131 GKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNFSVTPTTATEKKAP 190

[Close]

BLAST of PI0015454 vs. TAIR 10
Match: AT4G23750.2 (cytokinin response factor 2 )

HSP 1 Score: 127.1 bits (318), Expect = 1.7e-29
Identity = 83/225 (36.89%), Postives = 115/225 (51.11%), Query Frame = 0


Query: 7   RFKFRERR--SVTGITLPPDSAAPRILRIFVTDSDATDSSSSDDDDDAQLL----RLVRR 66
           R KF E +  + T ++   ++   RILRI VTD DATDSSS D++++ Q      R V++
Sbjct: 11  RIKFTEHKTNTTTIVSELTNTHQTRILRISVTDPDATDSSSDDEEEEHQRFVSKRRRVKK 70

Query: 67  HINEI------------------RFQDSTHSKPNEIQPT----------KKYRGVRRRPW 126
            +NE+                  + Q       + + P           KK+RGVR+RPW
Sbjct: 71  FVNEVYLDSGAVVTGSCGQMESKKRQKRAVKSESTVSPVVSATTTTTGEKKFRGVRQRPW 130

Query: 127 GKFAAEIRDPIKRTRIWLGTFDSPEEAAIVYDQAAIRFRGPDALTNIVKPP----QRNLP 179
           GK+AAEIRDP+KR R+WLGT+++ EEAA+VYD AAI+ RGPDALTN    P    ++  P
Sbjct: 131 GKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNFSVTPTTATEKKAP 190

The following BLAST results are available for this feature:

BLAST of PI0015454 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M374	2.7e-35	46.67	Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana OX=3702 GN...	[more]
O82339	5.2e-31	42.29	Ethylene-responsive transcription factor CRF5 OS=Arabidopsis thaliana OX=3702 GN...	[more]
O04682	1.2e-30	44.64	Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicu...	[more]
Q9SUE3	5.8e-30	45.64	Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9SUQ2	2.4e-28	36.89	Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of PI0015454 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SSM5	2.7e-107	82.64	Ethylene-responsive transcription factor CRF6-like OS=Cucumis melo var. makuwa O...	[more]
A0A1S3BE80	2.7e-107	82.64	ethylene-responsive transcription factor CRF6-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A0A0KE47	1.5e-102	79.84	AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G042450 PE=...	[more]
A0A6J1DA05	8.3e-48	48.84	ethylene-responsive transcription factor CRF2-like OS=Momordica charantia OX=367...	[more]
A0A2P5YTL8	3.9e-37	51.06	AP2/ERF domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA016...	[more]

BLAST of PI0015454 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008445792.1	5.6e-107	82.64	PREDICTED: ethylene-responsive transcription factor CRF6-like [Cucumis melo] >KA...	[more]
XP_011656563.1	3.2e-102	79.84	ethylene-responsive transcription factor CRF6 [Cucumis sativus] >KGN46011.1 hypo...	[more]
XP_038886548.1	2.9e-87	69.08	ethylene-responsive transcription factor CRF6-like [Benincasa hispida]	[more]
XP_022150419.1	1.7e-47	48.84	ethylene-responsive transcription factor CRF2-like [Momordica charantia]	[more]
PPS18926.1	8.0e-37	51.06	hypothetical protein GOBAR_AA01665 [Gossypium barbadense]	[more]

BLAST of PI0015454 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61630.1	1.9e-36	46.67	cytokinin response factor 6	[more]
AT2G46310.1	3.7e-32	42.29	cytokinin response factor 5	[more]
AT4G27950.1	4.1e-31	45.64	cytokinin response factor 4	[more]
AT4G23750.1	1.7e-29	36.89	cytokinin response factor 2	[more]
AT4G23750.2	1.7e-29	36.89	cytokinin response factor 2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 84..95 score: 72.73 coord: 106..122 score: 58.61
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 83..146 e-value: 5.8E-35 score: 132.2
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 83..132 e-value: 2.1E-13 score: 50.3
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 83..140 score: 22.312807
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 82..138 e-value: 1.23457E-30 score: 105.431
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 82..140 e-value: 3.2E-24 score: 86.9
None	No IPR available	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 6..177
None	No IPR available	PANTHER	PTHR31194:SF108	PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI6-LIKE	coord: 6..177
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 83..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0015454.1	PI0015454.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity