PI0015423 (gene) Melon (PI 482460) v1

Overview


Name	PI0015423
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Transposon Ty3-G Gag-Pol polyprotein
Location	chr03: 16216057 .. 16216293 (-)
RNA-Seq Expression	PI0015423
Synteny	PI0015423

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGGCAAAAGGAAGTTAGAGTCTTTGGATCTGCAAACCAAAGGCGAGAAGAAGACAAAGCCATCAATTGAAGAACCACCAGAGTTAAAGCTAAAACCTTTACCCAACCACATGAAATATGCATATTTGAGGGAGAATGACACTATGGCCGTCATCATCTTCGCCTACTTGAACACCGCAGAAGAAAATACGTTATTGAATATGCTAAAACGCCATAAGAAGGCAATAGGATAG

mRNA sequence

ATGTCTGGCAAAAGGAAGTTAGAGTCTTTGGATCTGCAAACCAAAGGCGAGAAGAAGACAAAGCCATCAATTGAAGAACCACCAGAGTTAAAGCTAAAACCTTTACCCAACCACATGAAATATGCATATTTGAGGGAGAATGACACTATGGCCGTCATCATCTTCGCCTACTTGAACACCGCAGAAGAAAATACGTTATTGAATATGCTAAAACGCCATAAGAAGGCAATAGGATAG

Coding sequence (CDS)

ATGTCTGGCAAAAGGAAGTTAGAGTCTTTGGATCTGCAAACCAAAGGCGAGAAGAAGACAAAGCCATCAATTGAAGAACCACCAGAGTTAAAGCTAAAACCTTTACCCAACCACATGAAATATGCATATTTGAGGGAGAATGACACTATGGCCGTCATCATCTTCGCCTACTTGAACACCGCAGAAGAAAATACGTTATTGAATATGCTAAAACGCCATAAGAAGGCAATAGGATAG

Protein sequence

MSGKRKLESLDLQTKGEKKTKPSIEEPPELKLKPLPNHMKYAYLRENDTMAVIIFAYLNTAEENTLLNMLKRHKKAIG

Homology

[Close]

BLAST of PI0015423 vs. ExPASy TrEMBL
Match: A0A5D3C0Z2 (Integrase_H2C2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00690 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.4e-21
Identity = 56/75 (74.67%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 1   MSGKRKLESLDLQTKGEKKTKPSIEEPPELKLKPLPNHMKYAYLRENDTMAVIIFAYLNT 60
           +SGK K ESLDLQTKGE KT+ SIEEPP+L+LKPLPNH+KYAYLRENDT+ V I A+L+ 
Sbjct: 158 VSGKNKFESLDLQTKGENKTQASIEEPPKLELKPLPNHLKYAYLRENDTLPVSIPAHLDV 217

Query: 61  AEENTLLNMLKRHKK 76
            EE  LLNMLKRHKK
Sbjct: 218 TEEKALLNMLKRHKK 232

[Close]

BLAST of PI0015423 vs. ExPASy TrEMBL
Match: A0A5A7UF79 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00260 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.3e-21
Identity = 55/77 (71.43%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 1   MSGKRKLESLDLQTKGEKKTKPSIEEPPELKLKPLPNHMKYAYLRENDTMAVIIFAYLNT 60
           +S ++K ESLDLQ KGEKKTKPSIEEPPEL+LK LPNH+KY YLRENDT+ V I  +L+ 
Sbjct: 198 VSSEKKFESLDLQIKGEKKTKPSIEEPPELELKSLPNHLKYVYLRENDTLPVSISTHLDV 257

Query: 61  AEENTLLNMLKRHKKAI 78
           A+E  LLNMLKRHKK I
Sbjct: 258 AKEKELLNMLKRHKKEI 274

[Close]

BLAST of PI0015423 vs. ExPASy TrEMBL
Match: A0A5D3BM57 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold896G00490 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.9e-20
Identity = 54/75 (72.00%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 1  MSGKRKLESLDLQTKGEKKTKPSIEEPPELKLKPLPNHMKYAYLRENDTMAVIIFAYLNT 60
          MSG++K E LDLQTK EKKTKPSIEEPPEL+LKPLPNH+KYAYL ENDT+ V IFA L+ 
Sbjct: 1  MSGEKKFEPLDLQTKREKKTKPSIEEPPELELKPLPNHLKYAYLGENDTLPVTIFANLDA 60

Query: 61 AEENTLLNMLKRHKK 76
           +E  LL +LKR KK
Sbjct: 61 TDEKALLIILKRQKK 75

[Close]

BLAST of PI0015423 vs. ExPASy TrEMBL
Match: A0A5A7VE68 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00330 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.3e-19
Identity = 52/74 (70.27%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 4   KRKLESLDLQTKGEKKTKPSIEEPPELKLKPLPNHMKYAYLRENDTMAVIIFAYLNTAEE 63
           ++K E+LDL+TKGEKKTKPSIEEP EL+LKPL NH+KYAYLRENDT+ VII  +++  EE
Sbjct: 158 EKKFEALDLETKGEKKTKPSIEEPQELQLKPLLNHLKYAYLRENDTLLVIISTHVDAVEE 217

Query: 64  NTLLNMLKRHKKAI 78
             LLNMLK HK AI
Sbjct: 218 KVLLNMLKHHKNAI 231

[Close]

BLAST of PI0015423 vs. ExPASy TrEMBL
Match: A0A5D3BCU9 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00570 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.3e-19
Identity = 53/78 (67.95%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 1   MSGKRKLESLDLQTKGEKKTKPSIEEPPELKLKPLPNHMKYAYLRENDTMAVIIFAYLNT 60
           +SG++K ESLDLQTKGEKKTK SIEEPPEL+LKP  NH+KYAYL  NDT+++II  +L+ 
Sbjct: 97  VSGEKKFESLDLQTKGEKKTKSSIEEPPELELKPSLNHLKYAYLGGNDTLSIIISTHLDA 156

Query: 61  AEENTLLNMLKRHKKAIG 79
            EE  LLN+LK HKKA G
Sbjct: 157 TEEKVLLNILKLHKKANG 174

[Close]

BLAST of PI0015423 vs. NCBI nr
Match: KAA0040570.1 (uncharacterized protein E6C27_scaffold262G001400 [Cucumis melo var. makuwa] >TYK05613.1 uncharacterized protein E5676_scaffold98G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 2.9e-21
Identity = 56/75 (74.67%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 1   MSGKRKLESLDLQTKGEKKTKPSIEEPPELKLKPLPNHMKYAYLRENDTMAVIIFAYLNT 60
           +SGK K ESLDLQTKGE KT+ SIEEPP+L+LKPLPNH+KYAYLRENDT+ V I A+L+ 
Sbjct: 158 VSGKNKFESLDLQTKGENKTQASIEEPPKLELKPLPNHLKYAYLRENDTLPVSIPAHLDV 217

Query: 61  AEENTLLNMLKRHKK 76
            EE  LLNMLKRHKK
Sbjct: 218 TEEKALLNMLKRHKK 232

[Close]

BLAST of PI0015423 vs. NCBI nr
Match: KAA0052866.1 (uncharacterized protein E6C27_scaffold33G00230 [Cucumis melo var. makuwa] >TYK04359.1 uncharacterized protein E5676_scaffold675G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-20
Identity = 55/77 (71.43%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 1   MSGKRKLESLDLQTKGEKKTKPSIEEPPELKLKPLPNHMKYAYLRENDTMAVIIFAYLNT 60
           +S ++K ESLDLQ KGEKKTKPSIEEPPEL+LK LPNH+KY YLRENDT+ V I  +L+ 
Sbjct: 198 VSSEKKFESLDLQIKGEKKTKPSIEEPPELELKSLPNHLKYVYLRENDTLPVSISTHLDV 257

Query: 61  AEENTLLNMLKRHKKAI 78
           A+E  LLNMLKRHKK I
Sbjct: 258 AKEKELLNMLKRHKKEI 274

[Close]

BLAST of PI0015423 vs. NCBI nr
Match: KAA0059789.1 (uncharacterized protein E6C27_scaffold108G00540 [Cucumis melo var. makuwa] >TYJ99801.1 uncharacterized protein E5676_scaffold896G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-19
Identity = 54/75 (72.00%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 1  MSGKRKLESLDLQTKGEKKTKPSIEEPPELKLKPLPNHMKYAYLRENDTMAVIIFAYLNT 60
          MSG++K E LDLQTK EKKTKPSIEEPPEL+LKPLPNH+KYAYL ENDT+ V IFA L+ 
Sbjct: 1  MSGEKKFEPLDLQTKREKKTKPSIEEPPELELKPLPNHLKYAYLGENDTLPVTIFANLDA 60

Query: 61 AEENTLLNMLKRHKK 76
           +E  LL +LKR KK
Sbjct: 61 TDEKALLIILKRQKK 75

[Close]

BLAST of PI0015423 vs. NCBI nr
Match: TYJ96947.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 2.7e-19
Identity = 53/78 (67.95%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 1   MSGKRKLESLDLQTKGEKKTKPSIEEPPELKLKPLPNHMKYAYLRENDTMAVIIFAYLNT 60
           +SG++K ESLDLQTKGEKKTK SIEEPPEL+LKP  NH+KYAYL  NDT+++II  +L+ 
Sbjct: 97  VSGEKKFESLDLQTKGEKKTKSSIEEPPELELKPSLNHLKYAYLGGNDTLSIIISTHLDA 156

Query: 61  AEENTLLNMLKRHKKAIG 79
            EE  LLN+LK HKKA G
Sbjct: 157 TEEKVLLNILKLHKKANG 174

[Close]

BLAST of PI0015423 vs. NCBI nr
Match: KAA0066652.1 (uncharacterized protein E6C27_scaffold979G00840 [Cucumis melo var. makuwa] >TYK04095.1 uncharacterized protein E5676_scaffold2119G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 2.7e-19
Identity = 52/74 (70.27%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 4   KRKLESLDLQTKGEKKTKPSIEEPPELKLKPLPNHMKYAYLRENDTMAVIIFAYLNTAEE 63
           ++K E+LDL+TKGEKKTKPSIEEP EL+LKPL NH+KYAYLRENDT+ VII  +++  EE
Sbjct: 158 EKKFEALDLETKGEKKTKPSIEEPQELQLKPLLNHLKYAYLRENDTLLVIISTHVDAVEE 217

Query: 64  NTLLNMLKRHKKAI 78
             LLNMLK HK AI
Sbjct: 218 KVLLNMLKHHKNAI 231

The following BLAST results are available for this feature:

BLAST of PI0015423 vs.


Match Name	E-value	Identity	Description

BLAST of PI0015423 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C0Z2	1.4e-21	74.67	Integrase_H2C2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7UF79	5.3e-21	71.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BM57	5.9e-20	72.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VE68	1.3e-19	70.27	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BCU9	1.3e-19	67.95	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00570 PE=4...	[more]

BLAST of PI0015423 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040570.1	2.9e-21	74.67	uncharacterized protein E6C27_scaffold262G001400 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0052866.1	1.1e-20	71.43	uncharacterized protein E6C27_scaffold33G00230 [Cucumis melo var. makuwa] >TYK04...	[more]
KAA0059789.1	1.2e-19	72.00	uncharacterized protein E6C27_scaffold108G00540 [Cucumis melo var. makuwa] >TYJ9...	[more]
TYJ96947.1	2.7e-19	67.95	integrase [Cucumis melo var. makuwa]	[more]
KAA0066652.1	2.7e-19	70.27	uncharacterized protein E6C27_scaffold979G00840 [Cucumis melo var. makuwa] >TYK0...	[more]

BLAST of PI0015423 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 5..78
None	No IPR available	PANTHER	PTHR24559:SF373	REVERSE TRANSCRIPTASE DOMAIN, RIBONUCLEASE H-LIKE DOMAIN PROTEIN-RELATED	coord: 5..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0015423.1	PI0015423.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding