PI0015406 (gene) Melon (PI 482460) v1

Overview


Name	PI0015406
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr08: 2993842 .. 2995554 (-)
RNA-Seq Expression	PI0015406
Synteny	PI0015406

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACAGAGGAAAGACACGTATCACCCGAAGAACAAGTCATCGAAGGACCCGTTACTCGGGGTAGGAAAGAACAACATTCTCCAACCCGACGCTCGAAGTCTAAGGGACCGGCTGCGAGAGAGCATGTCGACACCCGCCTTACCAACCTCGAGCAAGGCTTGGAGGAGGTTCAATTCTCGGTTGGTAGGCTGGGTGATAATTTTGACGAATTGGTCCAGGAGAATGCCGAGATCACGACTGTTGCGAAAGAACTCGTTGAGGATCTGGTACGATCATTTAGGAAGGAACTGAACGAAGTGGCATCGGCATTAAAATCTCTCATCGAAGGTGAGTTACGTGAACTTCATACTAAGTATAACTCCCTTGATGCCAAAATAGACTTTGTTTGTTCCGAGTGTCGTTCCAAGCATGCTACCGGTGCAAGTACTTCAACCGGTAACCAATCAACCGCTGCGCAAGGCACCCATTTTATCAAGGTGCCCAAACCCGACATATATAACGGGGCGAGGAATGCCACAATTGTGGACAATTTCCTCTTTGGCCTAGAGCGGTACTTCGATGCACTAGGCGTGAATGATGATGGAGCTCGAATCAATAATGCCCTCACGTACCTACGGGATGCTGCACAACTTTGGTGGCGACGAAAGTACGCTGAACGGGAGCAGGGTCAGAATACCGTCCAGACATGAGAACAATTCAAAAGTGAACTAAGGAAACACTTTGTTCCCCACAATGCCGAAATGGAAGTGAGAGGTAAGCTCCGACGACACAGACAGATAGGAAGTATTCTTGACTATGTAAAGGAGTTTACCACACTTATGTTAGAGATAAATGACCTCTCCAAAAAAGACGCCTTCTTCTATTTCAAGGATGGGTTGAAAGAATGGGCCAAGGTAGAGTTACCGACGCAACGCACAAACACTGGATGATGCTATTGCGGTGGCCGAAACCTTGGTTGACTATTCCAACCAACAAAGGGGAAAAAAGCATGACTCATTCAAGGGAGGAAAAGGCGAAAAATAGAAGGATCACGCCCGACGAGACAATGTAAAGACGAAGTCCTTCAACAACAAGTATGGCAAGGCTACGGGTAATCACAAAGGTGAGTCCTCTAAACCCCCTAAGCCTTGTTTCGTCTGCGACGACCCTCATTGGACAAGGGATTGTCCAAATAGAAAAGCCATGAATGCTCTCGTGGCCAAACTCCAAGAGACCAAACCGAACGCCACAACCCAGGAGGCCCAAATGGGGTCGCTTCAATTTCTGAACGCCGTAACAGCATGCCCAAAGGAAGAAGACCAGAAAGGGGGCTTATTGTACACTGACATCCTAGTTAATGGGAGGCTGACCACAGCAATGCTAGATACAGGAGCCACCCATAACTTTATGGATGTAAAGGAAGCCAAAAGACTTGGACTCCAGTTGACAAAAGAGGCAGGTTCGATAAAAACTGTCAACGCGGAAGCTCAACCAATAGCAGGCATAGCCAAGGATGTTCCAGTAAAGCTAGGCACCTGGCAAGGTAAATAAGACTTCACTGTATTGCTGATGGATGACTTTTAGTTAGTCCTTGGGTTGACCTTCTTCAACCAGGTAATCTCCATACTTGACGCATATAAACAATTCCTTACCATTCTAGATGGGGGAATGACGATGGTACCGTTGAAGAAGGGAAAACCCGCTGTGATGCTCTCAGCCACACAGCTTAA

mRNA sequence

ATGTCTACAGAGGAAAGACACGTATCACCCGAAGAACAAGTCATCGAAGGACCCGTTACTCGGGGTAGGAAAGAACAACATTCTCCAACCCGACGCTCGAAGTCTAAGGGACCGGCTGCGAGAGAGCATGTCGACACCCGCCTTACCAACCTCGAGCAAGGCTTGGAGGAGGTTCAATTCTCGGTTGGTAGGCTGGGTGATAATTTTGACGAATTGGTCCAGGAGAATGCCGAGATCACGACTGTTGCGAAAGAACTCGTTGAGGATCTGGTACGATCATTTAGGAAGGAACTGAACGAAGTGGCATCGGCATTAAAATCTCTCATCGAAGGTGAATGGGGGAATGACGATGGTACCGTTGAAGAAGGGAAAACCCGCTGTGATGCTCTCAGCCACACAGCTTAA

Coding sequence (CDS)

ATGTCTACAGAGGAAAGACACGTATCACCCGAAGAACAAGTCATCGAAGGACCCGTTACTCGGGGTAGGAAAGAACAACATTCTCCAACCCGACGCTCGAAGTCTAAGGGACCGGCTGCGAGAGAGCATGTCGACACCCGCCTTACCAACCTCGAGCAAGGCTTGGAGGAGGTTCAATTCTCGGTTGGTAGGCTGGGTGATAATTTTGACGAATTGGTCCAGGAGAATGCCGAGATCACGACTGTTGCGAAAGAACTCGTTGAGGATCTGGTACGATCATTTAGGAAGGAACTGAACGAAGTGGCATCGGCATTAAAATCTCTCATCGAAGGTGAATGGGGGAATGACGATGGTACCGTTGAAGAAGGGAAAACCCGCTGTGATGCTCTCAGCCACACAGCTTAA

Protein sequence

MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQFSVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNEVASALKSLIEGEWGNDDGTVEEGKTRCDALSHTA

Homology

[Close]

BLAST of PI0015406 vs. ExPASy TrEMBL
Match: A0A5A7TAA5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00340 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.6e-39
Identity = 92/133 (69.17%), Postives = 108/133 (81.20%), Query Frame = 0


Query: 1   MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQF 60
           MS EE H SP EQVIEGPVTRGRKEQHSPTRRSKSKGPA REHVDTRLTNLEQG+E+VQ 
Sbjct: 1   MSAEEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQL 60

Query: 61  SVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNEVAS---ALKSLIEGEWGNDD 120
           +VGRL +NF+ELVQENAEIT+VAKE++ED+ R+F++EL E+AS    LK+ +EGE  N  
Sbjct: 61  AVGRLSENFEELVQENAEITSVAKEMIEDMGRTFQEELKELASTVTTLKAFVEGELHNLH 120

Query: 121 GTVEEGKTRCDAL 131
                 +TR DAL
Sbjct: 121 TKSISFETRLDAL 133

[Close]

BLAST of PI0015406 vs. ExPASy TrEMBL
Match: A0A1S3BG92 (uncharacterized protein LOC103489499 OS=Cucumis melo OX=3656 GN=LOC103489499 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 5.7e-39
Identity = 92/133 (69.17%), Postives = 107/133 (80.45%), Query Frame = 0


Query: 1   MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQF 60
           MS EE H SP EQVIEGPVTRGRKEQHSPTRRSKSKGPA REHVDTRLTNLEQG+E+VQ 
Sbjct: 1   MSAEEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQL 60

Query: 61  SVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNEVAS---ALKSLIEGEWGNDD 120
           +VGRL +NF+ELV ENAEIT+VAKE++ED+ R+F+KEL E+AS    LK+ +EGE  N  
Sbjct: 61  AVGRLSENFEELVLENAEITSVAKEMIEDMGRTFQKELKELASTVTTLKAFVEGELHNLH 120

Query: 121 GTVEEGKTRCDAL 131
                 +TR DAL
Sbjct: 121 TKSISFETRLDAL 133

[Close]

BLAST of PI0015406 vs. ExPASy TrEMBL
Match: A0A5A7VEX8 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00510 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 7.4e-39
Identity = 91/133 (68.42%), Postives = 107/133 (80.45%), Query Frame = 0


Query: 1   MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQF 60
           MS EE H SP EQVIEGPVTRGRKEQHSPTRRSKSKGPA REHVDTRLTNLEQG+E+VQ 
Sbjct: 1   MSAEEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQL 60

Query: 61  SVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNEVAS---ALKSLIEGEWGNDD 120
           +VGRL +NF+ELVQENAEIT+VAKE++ED+ R+F++EL E+ S    LK+ +EGE  N  
Sbjct: 61  AVGRLSENFEELVQENAEITSVAKEMIEDMGRTFQEELKELTSTVTTLKAFVEGELHNLH 120

Query: 121 GTVEEGKTRCDAL 131
                 +TR DAL
Sbjct: 121 TKSISFETRLDAL 133

[Close]

BLAST of PI0015406 vs. ExPASy TrEMBL
Match: A0A5A7THC0 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold370G00130 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.7e-38
Identity = 91/133 (68.42%), Postives = 107/133 (80.45%), Query Frame = 0


Query: 1   MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQF 60
           MS EE H SP EQVIEGPVTRGRKEQHSPTRRSKSKGPA REHVDTRLTNLEQG+E+VQ 
Sbjct: 1   MSAEEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQL 60

Query: 61  SVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNEVAS---ALKSLIEGEWGNDD 120
           +VGRL + F+ELVQENAEIT+VAKE++ED+ R+F+KEL E+AS    LK+ +EGE  +  
Sbjct: 61  AVGRLSEIFEELVQENAEITSVAKEMIEDMGRTFQKELRELASTVTTLKAFVEGELHDLH 120

Query: 121 GTVEEGKTRCDAL 131
                 +TR DAL
Sbjct: 121 TKSISFETRLDAL 133

[Close]

BLAST of PI0015406 vs. ExPASy TrEMBL
Match: A0A5D3BUU0 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00020 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 8.2e-38
Identity = 91/133 (68.42%), Postives = 107/133 (80.45%), Query Frame = 0


Query: 1   MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQF 60
           MS EE H SP EQVIEGPVTRGRKEQHS TRRSKSKGPA REHV+TRLTNLEQG+E+VQ 
Sbjct: 1   MSAEEGHTSPVEQVIEGPVTRGRKEQHSSTRRSKSKGPAVREHVNTRLTNLEQGMEDVQL 60

Query: 61  SVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNEVAS---ALKSLIEGEWGNDD 120
           +VGRL DNF+ELVQENAEIT+VAKE++ED+ R+F+KEL E+AS    LK+ +EGE  +  
Sbjct: 61  AVGRLSDNFEELVQENAEITSVAKEMIEDMGRTFQKELKELASTVTTLKAFVEGELHDLY 120

Query: 121 GTVEEGKTRCDAL 131
                 +TR DAL
Sbjct: 121 TKSISLETRLDAL 133

[Close]

BLAST of PI0015406 vs. NCBI nr
Match: KAA0040414.1 (uncharacterized protein E6C27_scaffold35G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 171.4 bits (433), Expect = 5.3e-39
Identity = 92/133 (69.17%), Postives = 108/133 (81.20%), Query Frame = 0


Query: 1   MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQF 60
           MS EE H SP EQVIEGPVTRGRKEQHSPTRRSKSKGPA REHVDTRLTNLEQG+E+VQ 
Sbjct: 1   MSAEEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQL 60

Query: 61  SVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNEVAS---ALKSLIEGEWGNDD 120
           +VGRL +NF+ELVQENAEIT+VAKE++ED+ R+F++EL E+AS    LK+ +EGE  N  
Sbjct: 61  AVGRLSENFEELVQENAEITSVAKEMIEDMGRTFQEELKELASTVTTLKAFVEGELHNLH 120

Query: 121 GTVEEGKTRCDAL 131
                 +TR DAL
Sbjct: 121 TKSISFETRLDAL 133

[Close]

BLAST of PI0015406 vs. NCBI nr
Match: XP_008446938.1 (PREDICTED: uncharacterized protein LOC103489499 [Cucumis melo])

HSP 1 Score: 170.2 bits (430), Expect = 1.2e-38
Identity = 92/133 (69.17%), Postives = 107/133 (80.45%), Query Frame = 0


Query: 1   MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQF 60
           MS EE H SP EQVIEGPVTRGRKEQHSPTRRSKSKGPA REHVDTRLTNLEQG+E+VQ 
Sbjct: 1   MSAEEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQL 60

Query: 61  SVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNEVAS---ALKSLIEGEWGNDD 120
           +VGRL +NF+ELV ENAEIT+VAKE++ED+ R+F+KEL E+AS    LK+ +EGE  N  
Sbjct: 61  AVGRLSENFEELVLENAEITSVAKEMIEDMGRTFQKELKELASTVTTLKAFVEGELHNLH 120

Query: 121 GTVEEGKTRCDAL 131
                 +TR DAL
Sbjct: 121 TKSISFETRLDAL 133

[Close]

BLAST of PI0015406 vs. NCBI nr
Match: KAA0065760.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 169.9 bits (429), Expect = 1.5e-38
Identity = 91/133 (68.42%), Postives = 107/133 (80.45%), Query Frame = 0


Query: 1   MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQF 60
           MS EE H SP EQVIEGPVTRGRKEQHSPTRRSKSKGPA REHVDTRLTNLEQG+E+VQ 
Sbjct: 1   MSAEEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQL 60

Query: 61  SVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNEVAS---ALKSLIEGEWGNDD 120
           +VGRL +NF+ELVQENAEIT+VAKE++ED+ R+F++EL E+ S    LK+ +EGE  N  
Sbjct: 61  AVGRLSENFEELVQENAEITSVAKEMIEDMGRTFQEELKELTSTVTTLKAFVEGELHNLH 120

Query: 121 GTVEEGKTRCDAL 131
                 +TR DAL
Sbjct: 121 TKSISFETRLDAL 133

[Close]

BLAST of PI0015406 vs. NCBI nr
Match: KAA0040659.1 (uncharacterized protein E6C27_scaffold370G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 167.5 bits (423), Expect = 7.6e-38
Identity = 91/133 (68.42%), Postives = 107/133 (80.45%), Query Frame = 0


Query: 1   MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQF 60
           MS EE H SP EQVIEGPVTRGRKEQHSPTRRSKSKGPA REHVDTRLTNLEQG+E+VQ 
Sbjct: 1   MSAEEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQL 60

Query: 61  SVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNEVAS---ALKSLIEGEWGNDD 120
           +VGRL + F+ELVQENAEIT+VAKE++ED+ R+F+KEL E+AS    LK+ +EGE  +  
Sbjct: 61  AVGRLSEIFEELVQENAEITSVAKEMIEDMGRTFQKELRELASTVTTLKAFVEGELHDLH 120

Query: 121 GTVEEGKTRCDAL 131
                 +TR DAL
Sbjct: 121 TKSISFETRLDAL 133

[Close]

BLAST of PI0015406 vs. NCBI nr
Match: TYK02748.1 (uncharacterized protein E5676_scaffold145G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 1.7e-37
Identity = 91/133 (68.42%), Postives = 107/133 (80.45%), Query Frame = 0


Query: 1   MSTEERHVSPEEQVIEGPVTRGRKEQHSPTRRSKSKGPAAREHVDTRLTNLEQGLEEVQF 60
           MS EE H SP EQVIEGPVTRGRKEQHS TRRSKSKGPA REHV+TRLTNLEQG+E+VQ 
Sbjct: 1   MSAEEGHTSPVEQVIEGPVTRGRKEQHSSTRRSKSKGPAVREHVNTRLTNLEQGMEDVQL 60

Query: 61  SVGRLGDNFDELVQENAEITTVAKELVEDLVRSFRKELNEVAS---ALKSLIEGEWGNDD 120
           +VGRL DNF+ELVQENAEIT+VAKE++ED+ R+F+KEL E+AS    LK+ +EGE  +  
Sbjct: 61  AVGRLSDNFEELVQENAEITSVAKEMIEDMGRTFQKELKELASTVTTLKAFVEGELHDLY 120

Query: 121 GTVEEGKTRCDAL 131
                 +TR DAL
Sbjct: 121 TKSISLETRLDAL 133

The following BLAST results are available for this feature:

BLAST of PI0015406 vs.


Match Name	E-value	Identity	Description

BLAST of PI0015406 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TAA5	2.6e-39	69.17	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3BG92	5.7e-39	69.17	uncharacterized protein LOC103489499 OS=Cucumis melo OX=3656 GN=LOC103489499 PE=...	[more]
A0A5A7VEX8	7.4e-39	68.42	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00510 PE=...	[more]
A0A5A7THC0	3.7e-38	68.42	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3BUU0	8.2e-38	68.42	Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of PI0015406 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040414.1	5.3e-39	69.17	uncharacterized protein E6C27_scaffold35G00340 [Cucumis melo var. makuwa]	[more]
XP_008446938.1	1.2e-38	69.17	PREDICTED: uncharacterized protein LOC103489499 [Cucumis melo]	[more]
KAA0065760.1	1.5e-38	68.42	polyprotein [Cucumis melo var. makuwa]	[more]
KAA0040659.1	7.6e-38	68.42	uncharacterized protein E6C27_scaffold370G00130 [Cucumis melo var. makuwa]	[more]
TYK02748.1	1.7e-37	68.42	uncharacterized protein E5676_scaffold145G00020 [Cucumis melo var. makuwa]	[more]

BLAST of PI0015406 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0015406.1	PI0015406.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity