Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCCACAGATGAGGATGATCTCATCTCATTCACTCCTAACAACAATCCACAATCCAGAGATACTACAACTCAAACCAATTCAGTTTCTTCACATGGATCATCAGGTATAAGTAATGTTTTATCTGATAATAATAATGTAAATGACTCAGGAAACAACCGTACACAACAGTCTCACACACCAGAAAGGGATAATGAACCTACTGTTCCTGAATGTGCTCCTTCAACAAGGGTCCAAAAGAACCATCCTCCCAGTGAAATTATTGGTCCTTTAGAAACTGGAATTACTACAAGAAGAAAGGAAAAATTAGATTATGCCAAAATGATTGGCAATATCTGTTTTACCTCTCAGATTGAACCATCAAATGTTCAAGAAGCACTCCAAGATGACCTCTGGATCACTGCAATGCAAAAGGAATTAGGACAATTCAAAAGAAATAAGGTATGGACTTTAGTTCCTCGTCCTTCTAATGCAAACATCATTGGCACAAAATGGATTTTTAAAAACAAAACCAATGAGGAGGGAACTGTAACTCGTAATAAAGCTCGTCTGGTAGCTCAAGGCTATGCACAAATTGAAGGAATAGATTTTGAGGAAACATTTGCTCCGGTTGCTAGGTTAGAATCTATACGCTTATTACTTGGTCTATCTTGCTGTCTTAAATTTAAACTTTATCAAATGGATGTTAAAAGTGCGTTTTTAAATGAAGCCATTCAAGAGGAGGTTTATGTAGCTCAACCCAAAGGATTCATTGATCCTAATTACCCTGATCATGTTTATAAGCTTAAAAAAGCCTTATACGGTCTTAAACAAGCACCACGTGCTTGGTATGATCGTCTTGCCTCGTTTCTCATTAACAATGGCTATGCAAGAGGAGGAATTGACAAGACTTTATTCATAAAGCAAACAGGTAATCAGTTTATTATTGCCCAAATATATGTTGATGACATTGTTTTTGGTGGTCACCCTAAAACCTTGGTAGACAGGTTTGTTTCTCAAATGCATAATGAATTTGAAATGAGTATGGTAGGGGAGTTGTCTTACTTTCTTGGATTTTAGGTTAAACAGTTACAAGATGGAATTTTTATTACTCAAGAAAAGTATGCTAAACAATTGGTGAAAAAATTTGGGCTAGACAAATCTCAACCTAAACGAACTCCGGCGAGTACAAGCTCAAAACATACAAAAGATGTCTCCGATGAGGATGTGGAAGAAAATTATATAGAAGCATGATTGGGGGTCTCCTGTACCTCATTGCCAGTCGTCCTGATATTGCTCATGCAGTTGGTATTTGTGCTCAGTACCAATCAAATCCAAGACTTTCTCATCTTCTTTCAGTTAAACAAATTATTAAATATGTTCTTGGAACTTATGATTATGGCTTACGTTATTCTTTTGATTCTATTTTGATAACCCTCACTCTGATCCTCAGACCACTCATACTTCTGTTCCTACTTCACACCCTGGTCCTTCCTCTACTCAACCAAACATTAAAGTCAAGAGTAAGAGAGTGTCTACTCTATCTGGTCGACGAAAGGTCCCTATGCATGTTAATCCTGTTCCTGTTGATGGCCTTTCATTCCATCATGAGGCGCATGTCCACAAATGGAAATATGTGGTACAACGCCGTATTGCTGATGAGTCGGAAGTCTCTGATGATCATCATTCTTGTCTGGCTATAATGACTCTCATCTCGCAAGCTAAACTTCTGCCCACTGTCTCCAATCTTGGCCCCTTTTATCCTAAATTAATTAGGGAAATGTTTGTTAACATTCCCTTGTCTTTTGAAAATCCAAGCAGCCCGGATTACCATACTATTCATGTGCGAGGTATGCCTTTCTCTGTTTCCCCTGATTCTTTAAATGCTTTTCTTGACATTAATCTTCCTGATGAACCTCAAACCTCTCCTACCCCTGATGAGCTTGCCTCTGAGTTAACAAGAGGGACTGTCACTCACTGGCCCTCTTCTAGCTATCTTTCTGCAGCTCGTCTCAGTGTTAAGTATGCAATTCTTCATAAGATAGGAATCCATAGTTGACTTCCTTCTCTTCACTCTTCAACTGTGTCTCAAGTCCTGGCTCACTTAATCTTTCTTATTGGAACCGACAAACCTGTTGACTTTGGCTCTTTTGCTGTCAGTCAATTAAAGCGCCATATCGATTCCTATGCCGTCAAGCTTCCTATTTGTCTGCCCCGTTTCTTCTGTAGCTTTCTTCTCACTCACAACCGTACAATTCTTCATCCGAATGAGGCTCCTGGTCCTTCTCCTTCCAAGCTCCATTTAAGTTATCGTCTCTTTCAAGGAGATCATGTCCCTGATATTGAGCATTCTATTCGCCCTCCGTCTTCTACTAATCTCCCTCACACTGATGGTTTGAGAACTCCTGATGGTGGCTTATTACTTCCTTCTTCTTTGGCAAATCAAGTTCTTCATGCCTTGACCTCTGAATCCCGCAGTCTCAGCACCATAATTCATGATCTTTCAGAGAGACGAAAGCTCATTGACTCTGTTGTCTCATCTGTTCGGTTGCTGTTTCCTGCCACTAAGGAAGTGCTTGCTGATCAACCTGACTCTTAA
mRNA sequence
ATGAGTCCACAGATGAGGATGATCTCATCTCATTCACTCCTAACAACAATCCACAATCCAGAGATACTACAACTCAAACCAATTCAGTTTCTTCACATGGATCATCAGACCACTCATACTTCTGTTCCTACTTCACACCCTGGTCCTTCCTCTACTCAACCAAACATTAAAGTCAAGAGTAAGAGAGTGTCTACTCTATCTGGTCGACGAAAGGTCCCTATGCATGTTAATCCTGTTCCTGTTGATGGCCTTTCATTCCATCATGAGGCGCATGTCCACAAATGGAAATATGTGGTACAACGCCGTATTGCTGATGAGTCGGAAGTCTCTGATGATCATCATTCTTGTCTGGCTATAATGACTCTCATCTCGCAAGCTAAACTTCTGCCCACTGTCTCCAATCTTGGCCCCTTTTATCCTAAATTAATTAGGGAAATGTTTGTTAACATTCCCTTGTCTTTTGAAAATCCAAGCAGCCCGGATTACCATACTATTCATGTGCGAGGTATGCCTTTCTCTGTTTCCCCTGATTCTTTAAATGCTTTTCTTGACATTAATCTTCCTGATGAACCTCAAACCTCTCCTACCCCTGATGAGCTTGCCTCTGAGTTAACAAGAGGGACTGTCACTCACTGGCCCTCTTCTAGCTATCTTTCTGCAGCTCGTCTCAGTGTTAATCAATTAAAGCGCCATATCGATTCCTATGCCGTCAAGCTTCCTATTTGTCTGCCCCGTTTCTTCTGTAGCTTTCTTCTCACTCACAACCGTACAATTCTTCATCCGAATGAGGCTCCTGGTCCTTCTCCTTCCAAGCTCCATTTAAGTTATCGTCTCTTTCAAGGAGATCATGTCCCTGATATTGAGCATTCTATTCGCCCTCCGTCTTCTACTAATCTCCCTCACACTGATGGTTTGAGAACTCCTGATGGTGGCTTATTACTTCCTTCTTCTTTGGCAAATCAAGTTCTTCATGCCTTGACCTCTGAATCCCGCAGTCTCAGCACCATAATTCATGATCTTTCAGAGAGACGAAAGCTCATTGACTCTGTTGTCTCATCTGTTCGGTTGCTGTTTCCTGCCACTAAGGAAGTGCTTGCTGATCAACCTGACTCTTAA
Coding sequence (CDS)
ATGAGTCCACAGATGAGGATGATCTCATCTCATTCACTCCTAACAACAATCCACAATCCAGAGATACTACAACTCAAACCAATTCAGTTTCTTCACATGGATCATCAGACCACTCATACTTCTGTTCCTACTTCACACCCTGGTCCTTCCTCTACTCAACCAAACATTAAAGTCAAGAGTAAGAGAGTGTCTACTCTATCTGGTCGACGAAAGGTCCCTATGCATGTTAATCCTGTTCCTGTTGATGGCCTTTCATTCCATCATGAGGCGCATGTCCACAAATGGAAATATGTGGTACAACGCCGTATTGCTGATGAGTCGGAAGTCTCTGATGATCATCATTCTTGTCTGGCTATAATGACTCTCATCTCGCAAGCTAAACTTCTGCCCACTGTCTCCAATCTTGGCCCCTTTTATCCTAAATTAATTAGGGAAATGTTTGTTAACATTCCCTTGTCTTTTGAAAATCCAAGCAGCCCGGATTACCATACTATTCATGTGCGAGGTATGCCTTTCTCTGTTTCCCCTGATTCTTTAAATGCTTTTCTTGACATTAATCTTCCTGATGAACCTCAAACCTCTCCTACCCCTGATGAGCTTGCCTCTGAGTTAACAAGAGGGACTGTCACTCACTGGCCCTCTTCTAGCTATCTTTCTGCAGCTCGTCTCAGTGTTAATCAATTAAAGCGCCATATCGATTCCTATGCCGTCAAGCTTCCTATTTGTCTGCCCCGTTTCTTCTGTAGCTTTCTTCTCACTCACAACCGTACAATTCTTCATCCGAATGAGGCTCCTGGTCCTTCTCCTTCCAAGCTCCATTTAAGTTATCGTCTCTTTCAAGGAGATCATGTCCCTGATATTGAGCATTCTATTCGCCCTCCGTCTTCTACTAATCTCCCTCACACTGATGGTTTGAGAACTCCTGATGGTGGCTTATTACTTCCTTCTTCTTTGGCAAATCAAGTTCTTCATGCCTTGACCTCTGAATCCCGCAGTCTCAGCACCATAATTCATGATCTTTCAGAGAGACGAAAGCTCATTGACTCTGTTGTCTCATCTGTTCGGTTGCTGTTTCCTGCCACTAAGGAAGTGCTTGCTGATCAACCTGACTCTTAA
Protein sequence
MSPQMRMISSHSLLTTIHNPEILQLKPIQFLHMDHQTTHTSVPTSHPGPSSTQPNIKVKSKRVSTLSGRRKVPMHVNPVPVDGLSFHHEAHVHKWKYVVQRRIADESEVSDDHHSCLAIMTLISQAKLLPTVSNLGPFYPKLIREMFVNIPLSFENPSSPDYHTIHVRGMPFSVSPDSLNAFLDINLPDEPQTSPTPDELASELTRGTVTHWPSSSYLSAARLSVNQLKRHIDSYAVKLPICLPRFFCSFLLTHNRTILHPNEAPGPSPSKLHLSYRLFQGDHVPDIEHSIRPPSSTNLPHTDGLRTPDGGLLLPSSLANQVLHALTSESRSLSTIIHDLSERRKLIDSVVSSVRLLFPATKEVLADQPDS
Homology
BLAST of PI0015384 vs. ExPASy TrEMBL
Match:
A0A5D3B7L1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002300 PE=4 SV=1)
HSP 1 Score: 253.1 bits (645), Expect = 1.8e-63
Identity = 129/269 (47.96%), Postives = 179/269 (66.54%), Query Frame = 0
Query: 43 PTSHPGPSSTQPNIKVKSKR-------VSTLSGRRKVPMHVNPVPVDGLSFHHEAHVHKW 102
P + PSS +K K+ ++T +GR+K+P+++ VP+DG+SFH E ++H+W
Sbjct: 375 PGAQQEPSSVPTELKPARKKGQQIRRNITTKAGRKKIPLNIPSVPIDGISFHLEENIHRW 434
Query: 103 KYVVQRRIADESEVSDDHHSCLAIMTLISQAKLLPTVSNLGPFYPKLIREMFVNIPLSFE 162
K+VVQRRIADE +SD HHSC++IM LI +A+L T+S++ PFYP+LIRE VN+P +
Sbjct: 435 KFVVQRRIADEVNISDKHHSCVSIMNLIEKARLSKTISDVYPFYPQLIREFIVNLPTNVN 494
Query: 163 NPSSPDYHTIHVRGMPFSVSPDSLNAFLD--INLPDEPQTSPTPDELASELTRGTVTHWP 222
+PSSPDY T+H+RG F++SP +N F+ +++ P +S T D LASEL+R T++ WP
Sbjct: 495 DPSSPDYLTVHIRGFKFTISPTMINGFMGNVVSINFSPSSSST-DVLASELSRVTLSSWP 554
Query: 223 SSSYLSAARLSV---------NQLKRHIDSYAVKLPICLPRFFCSFLLTHNRTILHPNEA 282
+ + A LSV NQL RH+ S+ VKLPI LPRFF LL N +L +A
Sbjct: 555 VNG-IPAVVLSVKVDAGAFIYNQLLRHVGSFGVKLPIALPRFFSDLLLHLNAVVLTTLDA 614
Query: 283 PGPSPSKLHLSYRLFQGDHVPDIEHSIRP 294
PGP P L LSYRLFQG HVPDI+H + P
Sbjct: 615 PGPDPKTLTLSYRLFQGSHVPDIDHDVHP 641
BLAST of PI0015384 vs. ExPASy TrEMBL
Match:
A0A1S3AV82 (uncharacterized protein LOC103483026 OS=Cucumis melo OX=3656 GN=LOC103483026 PE=4 SV=1)
HSP 1 Score: 241.1 bits (614), Expect = 7.3e-60
Identity = 134/329 (40.73%), Postives = 201/329 (61.09%), Query Frame = 0
Query: 41 SVPTSHPGPSSTQPNIKVKSKRVSTLSGRRKVPMHVNPVP-VDGLSFHHEAHVHKWKYVV 100
SVPT P ++ + + ++T +GR+K+P+++ VP VDG+SFH E +V +WK++V
Sbjct: 159 SVPTE---PKPSRKKGQQLRRNITTKAGRKKIPLNIPSVPIVDGISFHLEENVQRWKFIV 218
Query: 101 QRRIADESEVSDDHHSCLAIMTLISQAKLLPTVSNLGPFYPKLIREMFVNIPLSFENPSS 160
QRRIA++ +SD +HSC++IM LI + L T+ ++G FYP+LIRE VN+P F +PSS
Sbjct: 219 QRRIANDVNISDKYHSCVSIMNLIEKVGLSKTILDVGSFYPQLIREFIVNLPADFNDPSS 278
Query: 161 PDYHTIHVRGMPFSVSPDSLNAFLD--INLPDEPQTSPTPDELASELTRGTVTHWPSSSY 220
DY +H++G F++S +N FL +++ P +SP+ + LAS L GT++ WP +
Sbjct: 279 LDYQMVHIKGFKFTISSTVINGFLGNAVSINFSP-SSPSTNVLASVLPGGTLSSWPVNG- 338
Query: 221 LSAARLSVNQLKRH------IDSYAVKLPICLPRFFCSFLLTHNRTILHPNEAPGPSPSK 280
+ A LSV H + S+ VKLPI LPRFF LL N +L ++APGP P
Sbjct: 339 IPAVALSVKYAILHKIGIATVGSFGVKLPIALPRFFSGLLLHLNAAVLTTSDAPGPDPKT 398
Query: 281 LHLSYRLFQGDHVPDIEHSIRPPSSTNLPHTDGLRTPDGGLLLPSSLANQVLHALTSESR 340
L LSYRLFQG HVPDI+H + + T + LA ++ ++LT ESR
Sbjct: 399 LSLSYRLFQGGHVPDIDHDVHLSRGPRVFDTIDWDEATDRFFIDKELAYRIFNSLTVESR 458
Query: 341 SLSTIIHDLSERRKLIDSVVSSVRLLFPA 361
SL+T I+ +SERR IDS++ ++ P+
Sbjct: 459 SLATTINLMSERRLEIDSLIRHLKTFAPS 482
BLAST of PI0015384 vs. ExPASy TrEMBL
Match:
A0A5A7VFF7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00670 PE=4 SV=1)
HSP 1 Score: 240.4 bits (612), Expect = 1.2e-59
Identity = 140/348 (40.23%), Postives = 201/348 (57.76%), Query Frame = 0
Query: 37 TTHTSVPTSHPGPSSTQPNIKVKS-----KRVSTLSGRRKVPMHVNPVPVDGLSFHHEAH 96
T S P P P T+P K + ++T GR+K+P+++ VP++G+SFH E +
Sbjct: 197 TVDPSAPQETP-PVPTEPKPARKKGQQIRRNITTKVGRKKIPLNIPSVPINGISFHLEEN 256
Query: 97 VHKWKYVVQRRIADESEVSDDHHSCLAIMTLISQAKLLPTVSNLGPFYPKLIREMFVNIP 156
V +WK+VVQRRIADE +SD HHSC++IM LI +A L T+S++GPFYP+LIRE VN+P
Sbjct: 257 VKRWKFVVQRRIADEVNISDKHHSCVSIMNLIEKAGLSKTISDVGPFYPQLIREFIVNLP 316
Query: 157 LSFENPSSPDYHTIHVRGMPFSVSPDSLNAFLD--INLPDEPQTSPTPDELASELTRGTV 216
F +PSSP+Y T+H++G F++SP +N FL I++ P +SP D LA L+ G +
Sbjct: 317 ADFNDPSSPNYQTVHIKGFKFTISPTVINGFLGNAISINFSP-SSPATDVLAFVLSGGIL 376
Query: 217 THWPSSSYLSAARLSVNQL------------KRHIDSYAVKLPICL------PRFFCSFL 276
+ WP + + LSV + H S + L L RFF L
Sbjct: 377 SSWPVNG-IPVVALSVKYVILHKIGIANWFPSSHASSVSAALGTFLYRICNDDRFFSGLL 436
Query: 277 LTHNRTILHPNEAPGPSPSKLHLSYRLFQGDHVPDIEHSIRPPSSTNLPHTDGLRTPDGG 336
L N +L ++APG P+ L LSYRLFQ HVPDI+H + P L T G
Sbjct: 437 LHLNAAMLTTSDAPGSDPNTLALSYRLFQDSHVPDIDHDVHPSREPRLFDTTDWDEATDG 496
Query: 337 LLLPSSLANQVLHALTSESRSLSTIIHDLSERRKLIDSVVSSVRLLFP 360
+ LA+++L++LT++SRSLST I +SERR IDS++ ++ P
Sbjct: 497 FFVDRKLASRILNSLTAQSRSLSTAISLMSERRLEIDSLIRHLKTFAP 541
BLAST of PI0015384 vs. ExPASy TrEMBL
Match:
A0A5A7SZY3 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001920 PE=4 SV=1)
HSP 1 Score: 238.8 bits (608), Expect = 3.6e-59
Identity = 142/376 (37.77%), Postives = 206/376 (54.79%), Query Frame = 0
Query: 41 SVPTSHPGPSSTQPNIKVKSKR--------VSTLSGRRKVPMHVNPVPVDGLSFHHEAHV 100
+ P++ P S P + SKR ++T +GR+K+ +++ VP+DG+SFHHE +V
Sbjct: 941 TAPSTERRPES--PKVSQPSKRKTQQVRRNITTKTGRKKIHVNIPSVPIDGISFHHEENV 1000
Query: 101 HKWKYVVQRRIADESEVSDDHHSCLAIMTLISQAKLLPTVSNLGPFYPKLIREMFVNIPL 160
+WK+VVQRRIADE +S H SC++IM LI +A L T+SN+GPFYP+LIRE VN+P
Sbjct: 1001 QRWKFVVQRRIADEVNISRKHQSCMSIMDLIHRAGLEKTISNVGPFYPQLIREFIVNLPD 1060
Query: 161 SFENPSSPDYHTIHVRGMPFSVSPDSLNAFLDINLP-DEPQTSPTPDELASELTRGTVTH 220
F NPSS Y IH+RG F +S +N FL + D ++ P + LA L+ GT++
Sbjct: 1061 EFNNPSSLGYQMIHIRGFQFVISRAVINGFLGNTIDIDYSRSCPPTEVLAIVLSGGTLST 1120
Query: 221 WPSSSYLSAARLSV---------------------------------------------- 280
WP + +AA LS+
Sbjct: 1121 WPVNGIPTAA-LSIKYVFLHKIGIANWFPSSHAFSISTALGKFLYQICNDDKVDTGAFIY 1180
Query: 281 NQLKRHIDSYAVKLPICLPRFFCSFLLTHNRTILHPNEAPGPSPSKLHLSYRLFQGDHVP 340
NQL RH+ S+ VK+PI LPRFF S LL N +L +APGP P + SY+LFQG HV
Sbjct: 1181 NQLVRHVGSFGVKVPIALPRFFSSLLLHLNGAVLIAADAPGPEPKTIAFSYKLFQGSHVS 1240
Query: 341 DIEHSIRPPSSTNLPHTDGLRTPDGGLLLPSSLANQVLHALTSESRSLSTIIHDLSERRK 362
DI H + S + T G + LA +++++LT+ESR+L+ I+ LSERR
Sbjct: 1241 DINHDVHLTRSPRIFDTTDWDESVDGFSVDHELAARIVNSLTAESRALTNSINLLSERRL 1300
BLAST of PI0015384 vs. ExPASy TrEMBL
Match:
A0A5A7VHK0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G00750 PE=4 SV=1)
HSP 1 Score: 236.5 bits (602), Expect = 1.8e-58
Identity = 139/369 (37.67%), Postives = 208/369 (56.37%), Query Frame = 0
Query: 41 SVPTSHPGPSSTQPNIKVKSKRVSTLSGRRKVPMHVNPV-PVDGLSFHHEAHVHKWKYVV 100
SVPT P ++ + + ++T +GR+K+P+++ V VDG+SFH E +V +WK+VV
Sbjct: 159 SVPTE---PKPSRKKGQQLRRNITTKAGRKKIPLNIPSVLIVDGISFHLEENVQRWKFVV 218
Query: 101 QRRIADESEVSDDHHSCLAIMTLISQAKLLPTVSNLGPFYPKLIREMFVNIPLSFENPSS 160
QRRIAD+ +SD +HSC++IM LI + L T+ ++G FYP+LIRE VN+P F +PSS
Sbjct: 219 QRRIADDVNISDKYHSCVSIMNLIEKVGLSKTILDVGSFYPQLIREFIVNLPADFNDPSS 278
Query: 161 PDYHTIHVRGMPFSVSPDSLNAFLD--INLPDEPQTSPTPDELASELTRGTVTHWP---- 220
DY +H+RG F++S +N FL +++ P +SP+ + LAS L GT++ WP
Sbjct: 279 LDYQMVHIRGFKFTISSTMINGFLGNAVSINFSP-SSPSTNVLASVLPGGTLSSWPVNGI 338
Query: 221 ---------------------SSSYLSAARLSV--------------------NQLKRHI 280
SS++S+ +++ NQL RH+
Sbjct: 339 PAVALSVKYAILHKIGIASWFPSSHVSSVSVALGTFLYHIYNDDRVDIGPFIYNQLLRHV 398
Query: 281 DSYAVKLPICLPRFFCSFLLTHNRTILHPNEAPGPSPSKLHLSYRLFQGDHVPDIEHSIR 340
S+ VKLPI LPRFF LL N +L ++AP P P L LSYRLFQG HVPDI+H++
Sbjct: 399 GSFGVKLPIALPRFFSGLLLHLNAAVLTTSDAPSPDPKTLSLSYRLFQGGHVPDIDHNVH 458
Query: 341 PPSSTNLPHTDGLRTPDGGLLLPSSLANQVLHALTSESRSLSTIIHDLSERRKLIDSVVS 362
+ T G + LA ++L++L ESRSL+T I +SERR IDS++
Sbjct: 459 LSRGPRVFDTIDWDEATDGFFVDKELAYRILNSLIVESRSLATAISLMSERRLEIDSLIR 518
BLAST of PI0015384 vs. NCBI nr
Match:
KAA0036856.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95920.1 gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 253.1 bits (645), Expect = 3.8e-63
Identity = 129/269 (47.96%), Postives = 179/269 (66.54%), Query Frame = 0
Query: 43 PTSHPGPSSTQPNIKVKSKR-------VSTLSGRRKVPMHVNPVPVDGLSFHHEAHVHKW 102
P + PSS +K K+ ++T +GR+K+P+++ VP+DG+SFH E ++H+W
Sbjct: 375 PGAQQEPSSVPTELKPARKKGQQIRRNITTKAGRKKIPLNIPSVPIDGISFHLEENIHRW 434
Query: 103 KYVVQRRIADESEVSDDHHSCLAIMTLISQAKLLPTVSNLGPFYPKLIREMFVNIPLSFE 162
K+VVQRRIADE +SD HHSC++IM LI +A+L T+S++ PFYP+LIRE VN+P +
Sbjct: 435 KFVVQRRIADEVNISDKHHSCVSIMNLIEKARLSKTISDVYPFYPQLIREFIVNLPTNVN 494
Query: 163 NPSSPDYHTIHVRGMPFSVSPDSLNAFLD--INLPDEPQTSPTPDELASELTRGTVTHWP 222
+PSSPDY T+H+RG F++SP +N F+ +++ P +S T D LASEL+R T++ WP
Sbjct: 495 DPSSPDYLTVHIRGFKFTISPTMINGFMGNVVSINFSPSSSST-DVLASELSRVTLSSWP 554
Query: 223 SSSYLSAARLSV---------NQLKRHIDSYAVKLPICLPRFFCSFLLTHNRTILHPNEA 282
+ + A LSV NQL RH+ S+ VKLPI LPRFF LL N +L +A
Sbjct: 555 VNG-IPAVVLSVKVDAGAFIYNQLLRHVGSFGVKLPIALPRFFSDLLLHLNAVVLTTLDA 614
Query: 283 PGPSPSKLHLSYRLFQGDHVPDIEHSIRP 294
PGP P L LSYRLFQG HVPDI+H + P
Sbjct: 615 PGPDPKTLTLSYRLFQGSHVPDIDHDVHP 641
BLAST of PI0015384 vs. NCBI nr
Match:
XP_008437685.1 (PREDICTED: uncharacterized protein LOC103483026 [Cucumis melo])
HSP 1 Score: 241.1 bits (614), Expect = 1.5e-59
Identity = 134/329 (40.73%), Postives = 201/329 (61.09%), Query Frame = 0
Query: 41 SVPTSHPGPSSTQPNIKVKSKRVSTLSGRRKVPMHVNPVP-VDGLSFHHEAHVHKWKYVV 100
SVPT P ++ + + ++T +GR+K+P+++ VP VDG+SFH E +V +WK++V
Sbjct: 159 SVPTE---PKPSRKKGQQLRRNITTKAGRKKIPLNIPSVPIVDGISFHLEENVQRWKFIV 218
Query: 101 QRRIADESEVSDDHHSCLAIMTLISQAKLLPTVSNLGPFYPKLIREMFVNIPLSFENPSS 160
QRRIA++ +SD +HSC++IM LI + L T+ ++G FYP+LIRE VN+P F +PSS
Sbjct: 219 QRRIANDVNISDKYHSCVSIMNLIEKVGLSKTILDVGSFYPQLIREFIVNLPADFNDPSS 278
Query: 161 PDYHTIHVRGMPFSVSPDSLNAFLD--INLPDEPQTSPTPDELASELTRGTVTHWPSSSY 220
DY +H++G F++S +N FL +++ P +SP+ + LAS L GT++ WP +
Sbjct: 279 LDYQMVHIKGFKFTISSTVINGFLGNAVSINFSP-SSPSTNVLASVLPGGTLSSWPVNG- 338
Query: 221 LSAARLSVNQLKRH------IDSYAVKLPICLPRFFCSFLLTHNRTILHPNEAPGPSPSK 280
+ A LSV H + S+ VKLPI LPRFF LL N +L ++APGP P
Sbjct: 339 IPAVALSVKYAILHKIGIATVGSFGVKLPIALPRFFSGLLLHLNAAVLTTSDAPGPDPKT 398
Query: 281 LHLSYRLFQGDHVPDIEHSIRPPSSTNLPHTDGLRTPDGGLLLPSSLANQVLHALTSESR 340
L LSYRLFQG HVPDI+H + + T + LA ++ ++LT ESR
Sbjct: 399 LSLSYRLFQGGHVPDIDHDVHLSRGPRVFDTIDWDEATDRFFIDKELAYRIFNSLTVESR 458
Query: 341 SLSTIIHDLSERRKLIDSVVSSVRLLFPA 361
SL+T I+ +SERR IDS++ ++ P+
Sbjct: 459 SLATTINLMSERRLEIDSLIRHLKTFAPS 482
BLAST of PI0015384 vs. NCBI nr
Match:
KAA0066044.1 (uncharacterized protein E6C27_scaffold21G00170 [Cucumis melo var. makuwa] >TYJ99852.1 uncharacterized protein E5676_scaffold446G00670 [Cucumis melo var. makuwa])
HSP 1 Score: 240.4 bits (612), Expect = 2.6e-59
Identity = 140/348 (40.23%), Postives = 201/348 (57.76%), Query Frame = 0
Query: 37 TTHTSVPTSHPGPSSTQPNIKVKS-----KRVSTLSGRRKVPMHVNPVPVDGLSFHHEAH 96
T S P P P T+P K + ++T GR+K+P+++ VP++G+SFH E +
Sbjct: 197 TVDPSAPQETP-PVPTEPKPARKKGQQIRRNITTKVGRKKIPLNIPSVPINGISFHLEEN 256
Query: 97 VHKWKYVVQRRIADESEVSDDHHSCLAIMTLISQAKLLPTVSNLGPFYPKLIREMFVNIP 156
V +WK+VVQRRIADE +SD HHSC++IM LI +A L T+S++GPFYP+LIRE VN+P
Sbjct: 257 VKRWKFVVQRRIADEVNISDKHHSCVSIMNLIEKAGLSKTISDVGPFYPQLIREFIVNLP 316
Query: 157 LSFENPSSPDYHTIHVRGMPFSVSPDSLNAFLD--INLPDEPQTSPTPDELASELTRGTV 216
F +PSSP+Y T+H++G F++SP +N FL I++ P +SP D LA L+ G +
Sbjct: 317 ADFNDPSSPNYQTVHIKGFKFTISPTVINGFLGNAISINFSP-SSPATDVLAFVLSGGIL 376
Query: 217 THWPSSSYLSAARLSVNQL------------KRHIDSYAVKLPICL------PRFFCSFL 276
+ WP + + LSV + H S + L L RFF L
Sbjct: 377 SSWPVNG-IPVVALSVKYVILHKIGIANWFPSSHASSVSAALGTFLYRICNDDRFFSGLL 436
Query: 277 LTHNRTILHPNEAPGPSPSKLHLSYRLFQGDHVPDIEHSIRPPSSTNLPHTDGLRTPDGG 336
L N +L ++APG P+ L LSYRLFQ HVPDI+H + P L T G
Sbjct: 437 LHLNAAMLTTSDAPGSDPNTLALSYRLFQDSHVPDIDHDVHPSREPRLFDTTDWDEATDG 496
Query: 337 LLLPSSLANQVLHALTSESRSLSTIIHDLSERRKLIDSVVSSVRLLFP 360
+ LA+++L++LT++SRSLST I +SERR IDS++ ++ P
Sbjct: 497 FFVDRKLASRILNSLTAQSRSLSTAISLMSERRLEIDSLIRHLKTFAP 541
BLAST of PI0015384 vs. NCBI nr
Match:
KAA0036824.1 (uncharacterized protein E6C27_scaffold20G001240 [Cucumis melo var. makuwa] >TYJ95891.1 uncharacterized protein E5676_scaffold110G001920 [Cucumis melo var. makuwa])
HSP 1 Score: 238.8 bits (608), Expect = 7.5e-59
Identity = 142/376 (37.77%), Postives = 206/376 (54.79%), Query Frame = 0
Query: 41 SVPTSHPGPSSTQPNIKVKSKR--------VSTLSGRRKVPMHVNPVPVDGLSFHHEAHV 100
+ P++ P S P + SKR ++T +GR+K+ +++ VP+DG+SFHHE +V
Sbjct: 941 TAPSTERRPES--PKVSQPSKRKTQQVRRNITTKTGRKKIHVNIPSVPIDGISFHHEENV 1000
Query: 101 HKWKYVVQRRIADESEVSDDHHSCLAIMTLISQAKLLPTVSNLGPFYPKLIREMFVNIPL 160
+WK+VVQRRIADE +S H SC++IM LI +A L T+SN+GPFYP+LIRE VN+P
Sbjct: 1001 QRWKFVVQRRIADEVNISRKHQSCMSIMDLIHRAGLEKTISNVGPFYPQLIREFIVNLPD 1060
Query: 161 SFENPSSPDYHTIHVRGMPFSVSPDSLNAFLDINLP-DEPQTSPTPDELASELTRGTVTH 220
F NPSS Y IH+RG F +S +N FL + D ++ P + LA L+ GT++
Sbjct: 1061 EFNNPSSLGYQMIHIRGFQFVISRAVINGFLGNTIDIDYSRSCPPTEVLAIVLSGGTLST 1120
Query: 221 WPSSSYLSAARLSV---------------------------------------------- 280
WP + +AA LS+
Sbjct: 1121 WPVNGIPTAA-LSIKYVFLHKIGIANWFPSSHAFSISTALGKFLYQICNDDKVDTGAFIY 1180
Query: 281 NQLKRHIDSYAVKLPICLPRFFCSFLLTHNRTILHPNEAPGPSPSKLHLSYRLFQGDHVP 340
NQL RH+ S+ VK+PI LPRFF S LL N +L +APGP P + SY+LFQG HV
Sbjct: 1181 NQLVRHVGSFGVKVPIALPRFFSSLLLHLNGAVLIAADAPGPEPKTIAFSYKLFQGSHVS 1240
Query: 341 DIEHSIRPPSSTNLPHTDGLRTPDGGLLLPSSLANQVLHALTSESRSLSTIIHDLSERRK 362
DI H + S + T G + LA +++++LT+ESR+L+ I+ LSERR
Sbjct: 1241 DINHDVHLTRSPRIFDTTDWDESVDGFSVDHELAARIVNSLTAESRALTNSINLLSERRL 1300
BLAST of PI0015384 vs. NCBI nr
Match:
KAA0067563.1 (uncharacterized protein E6C27_scaffold485G00260 [Cucumis melo var. makuwa] >TYJ97193.1 uncharacterized protein E5676_scaffold174G00750 [Cucumis melo var. makuwa])
HSP 1 Score: 236.5 bits (602), Expect = 3.7e-58
Identity = 139/369 (37.67%), Postives = 208/369 (56.37%), Query Frame = 0
Query: 41 SVPTSHPGPSSTQPNIKVKSKRVSTLSGRRKVPMHVNPV-PVDGLSFHHEAHVHKWKYVV 100
SVPT P ++ + + ++T +GR+K+P+++ V VDG+SFH E +V +WK+VV
Sbjct: 159 SVPTE---PKPSRKKGQQLRRNITTKAGRKKIPLNIPSVLIVDGISFHLEENVQRWKFVV 218
Query: 101 QRRIADESEVSDDHHSCLAIMTLISQAKLLPTVSNLGPFYPKLIREMFVNIPLSFENPSS 160
QRRIAD+ +SD +HSC++IM LI + L T+ ++G FYP+LIRE VN+P F +PSS
Sbjct: 219 QRRIADDVNISDKYHSCVSIMNLIEKVGLSKTILDVGSFYPQLIREFIVNLPADFNDPSS 278
Query: 161 PDYHTIHVRGMPFSVSPDSLNAFLD--INLPDEPQTSPTPDELASELTRGTVTHWP---- 220
DY +H+RG F++S +N FL +++ P +SP+ + LAS L GT++ WP
Sbjct: 279 LDYQMVHIRGFKFTISSTMINGFLGNAVSINFSP-SSPSTNVLASVLPGGTLSSWPVNGI 338
Query: 221 ---------------------SSSYLSAARLSV--------------------NQLKRHI 280
SS++S+ +++ NQL RH+
Sbjct: 339 PAVALSVKYAILHKIGIASWFPSSHVSSVSVALGTFLYHIYNDDRVDIGPFIYNQLLRHV 398
Query: 281 DSYAVKLPICLPRFFCSFLLTHNRTILHPNEAPGPSPSKLHLSYRLFQGDHVPDIEHSIR 340
S+ VKLPI LPRFF LL N +L ++AP P P L LSYRLFQG HVPDI+H++
Sbjct: 399 GSFGVKLPIALPRFFSGLLLHLNAAVLTTSDAPSPDPKTLSLSYRLFQGGHVPDIDHNVH 458
Query: 341 PPSSTNLPHTDGLRTPDGGLLLPSSLANQVLHALTSESRSLSTIIHDLSERRKLIDSVVS 362
+ T G + LA ++L++L ESRSL+T I +SERR IDS++
Sbjct: 459 LSRGPRVFDTIDWDEATDGFFVDKELAYRILNSLIVESRSLATAISLMSERRLEIDSLIR 518
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3B7L1 | 1.8e-63 | 47.96 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G... | [more] |
| A0A1S3AV82 | 7.3e-60 | 40.73 | uncharacterized protein LOC103483026 OS=Cucumis melo OX=3656 GN=LOC103483026 PE=... | [more] |
| A0A5A7VFF7 | 1.2e-59 | 40.23 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7SZY3 | 3.6e-59 | 37.77 | Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v... | [more] |
| A0A5A7VHK0 | 1.8e-58 | 37.67 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0036856.1 | 3.8e-63 | 47.96 | gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95920.1 gag-pol polyprotein [... | [more] |
| XP_008437685.1 | 1.5e-59 | 40.73 | PREDICTED: uncharacterized protein LOC103483026 [Cucumis melo] | [more] |
| KAA0066044.1 | 2.6e-59 | 40.23 | uncharacterized protein E6C27_scaffold21G00170 [Cucumis melo var. makuwa] >TYJ99... | [more] |
| KAA0036824.1 | 7.5e-59 | 37.77 | uncharacterized protein E6C27_scaffold20G001240 [Cucumis melo var. makuwa] >TYJ9... | [more] |
| KAA0067563.1 | 3.7e-58 | 37.67 | uncharacterized protein E6C27_scaffold485G00260 [Cucumis melo var. makuwa] >TYJ9... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
