PI0015372 (gene) Melon (PI 482460) v1

Overview
NamePI0015372
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr01: 18847959 .. 18848657 (-)
RNA-Seq ExpressionPI0015372
SyntenyPI0015372
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCAGATGTCGGACGAAGATCCACATGATCACATCAAGAGTTTCTACTCTATATGTTCCTTGTTCCACATGTCTGGCATGACGCAAGAAAAGTTTCCCTTTACTCTCTTCCCACTGACATTAAAGGATGACGCGAAGAGATGGGTTGGCTCGCTTGAGGTAAGGGAAATAACCACTTAGGACCAATTGATAGCAAAATATATGAAGAAGTTATTTCCTCCCCCAGAGAATATCGGCAAGGAAGGGACATTTGAACTTCCAGCAGAAAGATAGAGAAACTTTGTACGATGTGGAGTAGGTACATACGGTTGATCAAGGCATGCCCTCACAATGGCATACCTAAGTGTATCTTGATAAAGGTTTTCTATGATGGACTGAACAAAGCGACACAACAGACTGCTGATGCTGCATTCGCAAGTGGGATATTGACAAGAACATACACCCAAATCAAGGCGACACTAAACACTATGTCTAGTAATCATGAAGAATGGGAAGGTAACAACTTTGGCTCTTGCCACAGAAGGAAGCGAGGTGATGAAGAAGGATTTGATAAGAACACGATGGTGGCATTACAAGGACATATGACCATGATGAACAACTTGCTTCAATCTATGGCCTTAATGCAAGTTAATGTTGCAGGCGATTCGTTCACGCAACAAAATAGTTGGAGGAAATAGGATGTGTGGGATGCGGTGA

mRNA sequence

ATGCTTCAGATGTCGGACGAAGATCCACATGATCACATCAAGAGTTTCTACTCTATATGTTCCTTGTTCCACATGTCTGGCATGACGCAAGAAAAGTTTCCCTTTACTCTCTTCCCACTGACATTAAAGGATGACGCGAAGAGATGGGTTGGCTCGCTTGAGGCGATTCGTTCACGCAACAAAATAGTTGGAGGAAATAGGATGTGTGGGATGCGGTGA

Coding sequence (CDS)

ATGCTTCAGATGTCGGACGAAGATCCACATGATCACATCAAGAGTTTCTACTCTATATGTTCCTTGTTCCACATGTCTGGCATGACGCAAGAAAAGTTTCCCTTTACTCTCTTCCCACTGACATTAAAGGATGACGCGAAGAGATGGGTTGGCTCGCTTGAGGCGATTCGTTCACGCAACAAAATAGTTGGAGGAAATAGGATGTGTGGGATGCGGTGA

Protein sequence

MLQMSDEDPHDHIKSFYSICSLFHMSGMTQEKFPFTLFPLTLKDDAKRWVGSLEAIRSRNKIVGGNRMCGMR
Homology
[Close]
BLAST of PI0015372 vs. ExPASy TrEMBL
Match: A0A5A7TNS8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00350 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.6e-09
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 0 

Query: 6   DEDPHDHIKSFYSICSLFHMSGMTQEKFPFTLFPLTLKDDAKRWVGSLEAIRS 59
           DEDP DHIKS Y +CS FH+  ++QE    T F  TLKDD K+WVG+LE  R+
Sbjct: 97  DEDPQDHIKSIYVMCSSFHLPCLSQEDLHITYFTFTLKDDIKKWVGTLEVARA 149

[Close]
BLAST of PI0015372 vs. ExPASy TrEMBL
Match: A0A5A7TRN6 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1202G00600 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.5e-06
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 7  EDPHDHIKSFYSICSLFHMSGMTQEKFPFTLFPLTLKDDAKRWVGSLEA 56
          ED + +IKSFYSI S FH+S +TQ +   TLFP TLKDD + W+ ++EA
Sbjct: 17 EDSYGYIKSFYSIYSSFHISIITQNELRLTLFPFTLKDDMEGWMSAMEA 65

[Close]
BLAST of PI0015372 vs. ExPASy TrEMBL
Match: A0A5D3BCV5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37G00410 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.9e-06
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 0 

Query: 7  EDPHDHIKSFYSICSLFHMSGMTQEKFPFTLFPLTLKDDAKRWVGSLE 55
          +DPH +I SFYSI   FHM G+ +++  F LFP T+ D+AKRW  SL+
Sbjct: 14 KDPHKYICSFYSIGVSFHMPGIFKDELRFALFPFTMSDEAKRWANSLK 61

[Close]
BLAST of PI0015372 vs. ExPASy TrEMBL
Match: A0A392QG70 (Retrotrans_gag domain-containing protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.4e-05
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = 0 

Query: 7   EDPHDHIKSFYSICSLFHMSGMTQEKFPFTLFPLTLKDDAKRWVGSLE 55
           EDPH H++ F  + S F + G+TQE F   LFP +L+D AK W+ SLE
Sbjct: 63  EDPHLHLRQFLDVASNFKIPGITQEAFRLRLFPYSLRDRAKSWLNSLE 110

[Close]
BLAST of PI0015372 vs. ExPASy TrEMBL
Match: A0A392QF53 (Retrotrans_gag domain-containing protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.4e-05
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = 0 

Query: 7  EDPHDHIKSFYSICSLFHMSGMTQEKFPFTLFPLTLKDDAKRWVGSLE 55
          EDPH H++ F  + S F + G+TQE F   LFP +L+D AK W+ SLE
Sbjct: 36 EDPHLHLRQFLDVASNFKIPGITQEAFRLRLFPYSLRDRAKSWLNSLE 83

[Close]
BLAST of PI0015372 vs. NCBI nr
Match: KAA0045193.1 (hypothetical protein E6C27_scaffold30G001940 [Cucumis melo var. makuwa] >TYK27359.1 hypothetical protein E5676_scaffold325G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 0 

Query: 6   DEDPHDHIKSFYSICSLFHMSGMTQEKFPFTLFPLTLKDDAKRWVGSLEAIRS 59
           DEDP DHIKS Y +CS FH+  ++QE    T F  TLKDD K+WVG+LE  R+
Sbjct: 97  DEDPQDHIKSIYVMCSSFHLPCLSQEDLHITYFTFTLKDDIKKWVGTLEVARA 149

[Close]
BLAST of PI0015372 vs. NCBI nr
Match: WP_217833177.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 61.6 bits (148), Expect = 3.2e-06
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 0 

Query: 7   EDPHDHIKSFYSICSLFHMSGMTQEKFPFTLFPLTLKDDAKRWVGSLE 55
           EDPH H+KSF  ICS F M+G+ Q+    TLFP +L+D+A++W  S E
Sbjct: 129 EDPHAHLKSFLEICSAFPMAGVPQDSIRLTLFPFSLRDEARQWAYSFE 176

[Close]
BLAST of PI0015372 vs. NCBI nr
Match: XP_038896560.1 (uncharacterized protein LOC120084813 [Benincasa hispida])

HSP 1 Score: 60.8 bits (146), Expect = 5.4e-06
Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 0 

Query: 4  MSDEDPHDHIKSFYSICSLFHMSGMTQEKFPFTLFPLTLKDDAKRWVGSLE 55
          +  EDPH H+ SF  ICS F + G+T E+    LFP TL+D+A+RW  SLE
Sbjct: 14 LQGEDPHAHLTSFVDICSAFSILGVTPEELRLYLFPYTLRDEARRWAQSLE 64

[Close]
BLAST of PI0015372 vs. NCBI nr
Match: KAA0045508.1 (hypothetical protein E6C27_scaffold1202G00600 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 9.2e-06
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 7  EDPHDHIKSFYSICSLFHMSGMTQEKFPFTLFPLTLKDDAKRWVGSLEA 56
          ED + +IKSFYSI S FH+S +TQ +   TLFP TLKDD + W+ ++EA
Sbjct: 17 EDSYGYIKSFYSIYSSFHISIITQNELRLTLFPFTLKDDMEGWMSAMEA 65

[Close]
BLAST of PI0015372 vs. NCBI nr
Match: KAA0066251.1 (uncharacterized protein E6C27_scaffold21G002810 [Cucumis melo var. makuwa] >TYJ97670.1 uncharacterized protein E5676_scaffold37G00410 [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 2.1e-05
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 0 

Query: 7  EDPHDHIKSFYSICSLFHMSGMTQEKFPFTLFPLTLKDDAKRWVGSLE 55
          +DPH +I SFYSI   FHM G+ +++  F LFP T+ D+AKRW  SL+
Sbjct: 14 KDPHKYICSFYSIGVSFHMPGIFKDELRFALFPFTMSDEAKRWANSLK 61

The following BLAST results are available for this feature:
BLAST of PI0015372 vs.
Match NameE-valueIdentityDescription
BLAST of PI0015372 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TNS85.6e-0956.60Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TRN64.5e-0655.10Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3BCV59.9e-0652.08Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A392QG706.4e-0550.00Retrotrans_gag domain-containing protein (Fragment) OS=Trifolium medium OX=97028... [more]
A0A392QF536.4e-0550.00Retrotrans_gag domain-containing protein (Fragment) OS=Trifolium medium OX=97028... [more]
BLAST of PI0015372 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0045193.11.2e-0856.60hypothetical protein E6C27_scaffold30G001940 [Cucumis melo var. makuwa] >TYK2735... [more]
WP_217833177.13.2e-0652.08retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70... [more]
XP_038896560.15.4e-0650.98uncharacterized protein LOC120084813 [Benincasa hispida][more]
KAA0045508.19.2e-0655.10hypothetical protein E6C27_scaffold1202G00600 [Cucumis melo var. makuwa][more]
KAA0066251.12.1e-0552.08uncharacterized protein E6C27_scaffold21G002810 [Cucumis melo var. makuwa] >TYJ9... [more]
BLAST of PI0015372 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0015372.1PI0015372.1mRNA