PI0015188 (gene) Melon (PI 482460) v1

Overview


Name	PI0015188
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Transposon TX1 uncharacterized
Location	chr11: 2815019 .. 2816485 (+)
RNA-Seq Expression	PI0015188
Synteny	PI0015188

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACCTGTCGTGCCCAATGGAAAATCAAGAACCACCCACCAGTTTAATAAGAAATTAACTTTGGCTGTTACACCATCGAAAGAAGGCCAAATAGCGAACGGTCACTCCCCAGACGCTCCAAATCCTCCAAATTCTCCTAAGAAACGGTCGTTGCCCCATGCCCAAACAGAGCAAATAGTCTCTTCCTCAATTGCCGCTTCAGTGCCCATCAAATTTCCACTTGGTAAAGTTTCATCCACCTCCTCATCTACTGCTTCTCCTTCCTCTACATCTCTCTCTTCCTCCACAAGATCGAAGTCCAGGGTAAAAAATAAAAACAAGTCAAAATCAAGAAAATTCCCAATCTCTTTAAACCTTTCCCAAAGCATTTTGTAAGAAAGAGACAGAAGGAAGCCAAAAGATTAAGCTCCTTAAAGGCCAAGTTAGTTTCAGAACAGAACCCTGATTTGTTGGAGGAAAAATGTGCCCATTCCCATTCTTCATCCCTCTCTAACAGGTCAAAATCTCAAATTCCCACTCTTCCTCAATTTACGCACTCGATTTTTTCCTTCCGATTAAATTCTTGGGAGGTACTCCAAATCATACTCCGACTCCCCCCACCCAAACAAAACGCTTTTAGTGTGAGTAGCGAGGAAGATTATCAGCTAGCAAGATCAGATAGAAAAGAGACTCGACATTCGAAGGAACCCCTGGACACAAGAGGATTTGTTCATTGAATCACATTCTTCAGAACCACCATCACAGGTGATACCTTGTGACATCCCCACACACTTGAAATCTATTGTTGGCAAATGCAAATTGGTCTTGGCCTAACTGCGACAAGAAGCAATCTTTAGTTACCTTGGTTGTGGAACAATGAAAATTATATCATGGAATACGAGAGAATTGAAGAGTGTAAACAAGAGATTGTCCCTAAAGAGATTCTTGAAATTCCACAACCCGAAAGTGGTACTTATCCAAGAATCTAAGAAAGGAGAATTTGATGTACTCTTCATAAAATCACTTTGGACTTCAAAGGACATCGGATGGAAATTTGTCGAATCAATTGGAACTTCAGGAGGAATGTTAATTATGTGGGACACAAGCAAATTAGAAGTCAATGAAACACTCATGGGCGGATACTCTTTGACGGTAAAATGCACCTCTCTGCAGAAAAACTTTCTAGATAACCAATTTGTATGCTCCAAACGACTATAGAGAGGAGATTCGTATGGCTTGAGCTTCTCATTCTCTCAAAATATTGTTCGGAAGCTTGGTGTAATGGAGGATTTCAACGTTACAAGATGGGCACATGAGAGATTCCTTTTTGGAAGAACAACCAGAGGCATACGTATGCAGCTGTTTAATGATTTGATTGATAAAGCTAAGCTGCTAGAAGTTACCCTTTGTAAACGCAAATACACTTGGTCTCGAGAAGGGGCTACCAACACTGGACAAATTCTTCCTAAACAAAGCATGGGATGA

mRNA sequence

ATGCCACCTGTCGTGCCCAATGGAAAATCAAGAACCACCCACCAGTTTAATAAGAAATTAACTTTGGCTGTTACACCATCGAAAGAAGGCCAAATAGCGAACGGTCACTCCCCAGACGCTCCAAATCCTCCAAATTCTCCTAAGAAACGGTCGTTGCCCCATGCCCAAACAGAGCAAATAGTCTCTTCCTCAATTGCCGCTTCAGTGCCCATCAAATTTCCACTTGGTAAAGTTTCATCCACCTCCTCATCTACTGCTTCTCCTTCCTCTACATCTCTCTCTTCCTCCACAAGATCGAAGTCCAGGAGAGGAGATTCGTATGGCTTGAGCTTCTCATTCTCTCAAAATATTGTTCGGAAGCTTGGTGTAATGGAGGATTTCAACGTTACAAGATGGGCACATGAGAGATTCCTTTTTGGAAGAACAACCAGAGGCATACGTATGCAGCTGTTTAATGATTTGATTGATAAAGCTAAGCTGCTAGAAGTTACCCTTTGTAAACGCAAATACACTTGGTCTCGAGAAGGGGCTACCAACACTGGACAAATTCTTCCTAAACAAAGCATGGGATGA

Coding sequence (CDS)

ATGCCACCTGTCGTGCCCAATGGAAAATCAAGAACCACCCACCAGTTTAATAAGAAATTAACTTTGGCTGTTACACCATCGAAAGAAGGCCAAATAGCGAACGGTCACTCCCCAGACGCTCCAAATCCTCCAAATTCTCCTAAGAAACGGTCGTTGCCCCATGCCCAAACAGAGCAAATAGTCTCTTCCTCAATTGCCGCTTCAGTGCCCATCAAATTTCCACTTGGTAAAGTTTCATCCACCTCCTCATCTACTGCTTCTCCTTCCTCTACATCTCTCTCTTCCTCCACAAGATCGAAGTCCAGGAGAGGAGATTCGTATGGCTTGAGCTTCTCATTCTCTCAAAATATTGTTCGGAAGCTTGGTGTAATGGAGGATTTCAACGTTACAAGATGGGCACATGAGAGATTCCTTTTTGGAAGAACAACCAGAGGCATACGTATGCAGCTGTTTAATGATTTGATTGATAAAGCTAAGCTGCTAGAAGTTACCCTTTGTAAACGCAAATACACTTGGTCTCGAGAAGGGGCTACCAACACTGGACAAATTCTTCCTAAACAAAGCATGGGATGA

Protein sequence

MPPVVPNGKSRTTHQFNKKLTLAVTPSKEGQIANGHSPDAPNPPNSPKKRSLPHAQTEQIVSSSIAASVPIKFPLGKVSSTSSSTASPSSTSLSSSTRSKSRRGDSYGLSFSFSQNIVRKLGVMEDFNVTRWAHERFLFGRTTRGIRMQLFNDLIDKAKLLEVTLCKRKYTWSREGATNTGQILPKQSMG

Homology

[Close]

BLAST of PI0015188 vs. ExPASy TrEMBL
Match: A0A5D3D1U8 (Transposon TX1 uncharacterized OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00730 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-10
Identity = 34/53 (64.15%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 126 DFNVTRWAHERFLFGRTTRGIRMQLFNDLIDKAKLLEVTLCKRKYTWSREGAT 179
           DFN+TRW HERF  GRTTRG  M+LFN+ ++KAKLLE+ L   ++TWSREGA+
Sbjct: 9   DFNITRWVHERFPLGRTTRG--MRLFNNFLEKAKLLEIPLGNDRFTWSREGAS 59

[Close]

BLAST of PI0015188 vs. ExPASy TrEMBL
Match: A0A5D3BDI9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G001240 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 6.7e-09
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 117 IVRKLGVMEDFNVTRWAHERFLFGRTTRGIRMQLFNDLIDKAKLLEVTLCKRKYTWSREG 176
           I+ +L +  DFN+TRWAHERF  GRTT+ +R   FN++I +AKL EV+L   ++TWSRE 
Sbjct: 178 ILARLQMRGDFNITRWAHERFPCGRTTKCVRK--FNNVIHRAKLFEVSLSNGRFTWSRED 237

Query: 177 ATNTG 182
             + G
Sbjct: 238 FVSVG 240

[Close]

BLAST of PI0015188 vs. ExPASy TrEMBL
Match: A0A5A7TAF5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G002130 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 6.7e-09
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 117 IVRKLGVMEDFNVTRWAHERFLFGRTTRGIRMQLFNDLIDKAKLLEVTLCKRKYTWSREG 176
           I+ +L +  DFN+TRWAHERF  GRTT+ +R   FN++I +AKL EV+L   ++TWSRE 
Sbjct: 178 ILARLQMRGDFNITRWAHERFPCGRTTKCVRK--FNNVIHRAKLFEVSLSNGRFTWSRED 237

Query: 177 ATNTG 182
             + G
Sbjct: 238 FVSVG 240

[Close]

BLAST of PI0015188 vs. ExPASy TrEMBL
Match: A0A5D3BXH7 (Exodeoxyribonuclease-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00160 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.7e-09
Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 126 DFNVTRWAHERFLFGRTTRGIRMQLFNDLIDKAKLLEVTLCKRKYTWSREGATNT 181
           DFN+TRWAHER+  GR+TRG  M+LFN LI+   L+E+ +   +YTW REG T++
Sbjct: 265 DFNITRWAHERYPLGRSTRG--MELFNKLIESVYLMEIPMLNGRYTWPREGGTSS 317

[Close]

BLAST of PI0015188 vs. ExPASy TrEMBL
Match: A0A5D3CIL8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00450 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-07
Identity = 32/52 (61.54%), Postives = 36/52 (69.23%), Query Frame = 0


Query: 126 DFNVTRWAHERFLFGRTTRGIRMQLFNDLIDKAKLLEVTLCKRKYTWSREGA 178
           DFN TRWAHERF  GR TRG+R   FN+ IDKA LLEV L    +TWS  G+
Sbjct: 6   DFNTTRWAHERFPIGRATRGMRK--FNNFIDKANLLEVPLSNGWFTWSCHGS 55

[Close]

BLAST of PI0015188 vs. NCBI nr
Match: KAA0040846.1 (Transposon TX1 uncharacterized [Cucumis melo var. makuwa] >TYK17822.1 Transposon TX1 uncharacterized [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 3.3e-10
Identity = 34/53 (64.15%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 126 DFNVTRWAHERFLFGRTTRGIRMQLFNDLIDKAKLLEVTLCKRKYTWSREGAT 179
           DFN+TRW HERF  GRTTRG  M+LFN+ ++KAKLLE+ L   ++TWSREGA+
Sbjct: 9   DFNITRWVHERFPLGRTTRG--MRLFNNFLEKAKLLEIPLGNDRFTWSREGAS 59

[Close]

BLAST of PI0015188 vs. NCBI nr
Match: KAA0038339.1 (uncharacterized protein E6C27_scaffold270G002130 [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-08
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 117 IVRKLGVMEDFNVTRWAHERFLFGRTTRGIRMQLFNDLIDKAKLLEVTLCKRKYTWSREG 176
           I+ +L +  DFN+TRWAHERF  GRTT+ +R   FN++I +AKL EV+L   ++TWSRE 
Sbjct: 178 ILARLQMRGDFNITRWAHERFPCGRTTKCVRK--FNNVIHRAKLFEVSLSNGRFTWSRED 237

Query: 177 ATNTG 182
             + G
Sbjct: 238 FVSVG 240

[Close]

BLAST of PI0015188 vs. NCBI nr
Match: TYJ97056.1 (uncharacterized protein E5676_scaffold506G001240 [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-08
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 117 IVRKLGVMEDFNVTRWAHERFLFGRTTRGIRMQLFNDLIDKAKLLEVTLCKRKYTWSREG 176
           I+ +L +  DFN+TRWAHERF  GRTT+ +R   FN++I +AKL EV+L   ++TWSRE 
Sbjct: 178 ILARLQMRGDFNITRWAHERFPCGRTTKCVRK--FNNVIHRAKLFEVSLSNGRFTWSRED 237

Query: 177 ATNTG 182
             + G
Sbjct: 238 FVSVG 240

[Close]

BLAST of PI0015188 vs. NCBI nr
Match: TYK03825.1 (exodeoxyribonuclease-like [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-08
Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 126 DFNVTRWAHERFLFGRTTRGIRMQLFNDLIDKAKLLEVTLCKRKYTWSREGATNT 181
           DFN+TRWAHER+  GR+TRG  M+LFN LI+   L+E+ +   +YTW REG T++
Sbjct: 265 DFNITRWAHERYPLGRSTRG--MELFNKLIESVYLMEIPMLNGRYTWPREGGTSS 317

[Close]

BLAST of PI0015188 vs. NCBI nr
Match: KAA0063413.1 (hypothetical protein E6C27_scaffold508G00500 [Cucumis melo var. makuwa] >TYK11671.1 hypothetical protein E5676_scaffold828G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 4.4e-07
Identity = 32/52 (61.54%), Postives = 36/52 (69.23%), Query Frame = 0


Query: 126 DFNVTRWAHERFLFGRTTRGIRMQLFNDLIDKAKLLEVTLCKRKYTWSREGA 178
           DFN TRWAHERF  GR TRG+R   FN+ IDKA LLEV L    +TWS  G+
Sbjct: 6   DFNTTRWAHERFPIGRATRGMRK--FNNFIDKANLLEVPLSNGWFTWSCHGS 55

The following BLAST results are available for this feature:

BLAST of PI0015188 vs.


Match Name	E-value	Identity	Description

BLAST of PI0015188 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D1U8	1.6e-10	64.15	Transposon TX1 uncharacterized OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3BDI9	6.7e-09	50.77	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TAF5	6.7e-09	50.77	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BXH7	8.7e-09	54.55	Exodeoxyribonuclease-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5D3CIL8	2.1e-07	61.54	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0015188 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040846.1	3.3e-10	64.15	Transposon TX1 uncharacterized [Cucumis melo var. makuwa] >TYK17822.1 Transposon...	[more]
KAA0038339.1	1.4e-08	50.77	uncharacterized protein E6C27_scaffold270G002130 [Cucumis melo var. makuwa]	[more]
TYJ97056.1	1.4e-08	50.77	uncharacterized protein E5676_scaffold506G001240 [Cucumis melo var. makuwa]	[more]
TYK03825.1	1.8e-08	54.55	exodeoxyribonuclease-like [Cucumis melo var. makuwa]	[more]
KAA0063413.1	4.4e-07	61.54	hypothetical protein E6C27_scaffold508G00500 [Cucumis melo var. makuwa] >TYK1167...	[more]

BLAST of PI0015188 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0015188.1	PI0015188.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0004518	nuclease activity