PI0015120 (gene) Melon (PI 482460) v1

Overview


Name	PI0015120
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag-pro-like protein
Location	chr08: 6299184 .. 6299701 (-)
RNA-Seq Expression	PI0015120
Synteny	PI0015120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAACAAGACAAAGACATGGATAAAATGAGACAAGAGATCAATAATCTTGGGGAGCAGGTTTCAAAGATACTAGAATTGCTTTCGATGGGAAAAGGAAGGTCATTGTAGATACAGCACAATCAAGCAATCCAGTTCAGGACACCGATGATCCCCTTTATCCTCCAGGGTTTACACCATCTCACACGCATGTTCCGCAGGCTCAAACCACTCAACACTATGTTGCTATGAATCCACTTTTTGCTGTTCCACCTCCTGTCCCAGATATAGAGCAATTGGAAGCTCAAGCTAAAATTCAAGATATGGGGCAAAATGAGAACACTTCGGCTAGGGAAAAACTAGATGTTTTGGAAGAAAGGCTACGAGCAATTGAAGGGACTGACGTTTATGGAAATATTAATGCAACACAACTCTGTTTGGTGCCGGGCTTGATAATTCCAGCAAAGTTTAAAGTTCCTGAATTGATAAATATGATGGATCCTCGTGTCCGAGAAGTCTCTTATAATGTACTGTAG

mRNA sequence

ATGGAAGAACAAGACAAAGACATGGATAAAATGAGACAAGAGATCAATAATCTTGGGGAGCAGGTTTCAAAGATACTAGAATTCAATCCAGTTCAGGACACCGATGATCCCCTTTATCCTCCAGGGTTTACACCATCTCACACGCATGTTCCGCAGGCTCAAACCACTCAACACTATGTTGCTATGAATCCACTTTTTGCTGTTCCACCTCCTGTCCCAGATATAGAGCAATTGGAAGCTCAAGCTAAAATTCAAGATATGGGGCAAAATGAGAACACTTCGGCTAGGGAAAAACTAGATGTTTTGGAAGAAAGGCTACGAGCAATTGAAGGGACTGACGTTTATGGAAATATTAATGCAACACAACTCTGTTTGGTGCCGGGCTTGATAATTCCAGCAAAGTTTAAAGTTCCTGAATTGATAAATATGATGGATCCTCGTGTCCGAGAAGTCTCTTATAATGTACTGTAG

Coding sequence (CDS)

ATGGAAGAACAAGACAAAGACATGGATAAAATGAGACAAGAGATCAATAATCTTGGGGAGCAGGTTTCAAAGATACTAGAATTCAATCCAGTTCAGGACACCGATGATCCCCTTTATCCTCCAGGGTTTACACCATCTCACACGCATGTTCCGCAGGCTCAAACCACTCAACACTATGTTGCTATGAATCCACTTTTTGCTGTTCCACCTCCTGTCCCAGATATAGAGCAATTGGAAGCTCAAGCTAAAATTCAAGATATGGGGCAAAATGAGAACACTTCGGCTAGGGAAAAACTAGATGTTTTGGAAGAAAGGCTACGAGCAATTGAAGGGACTGACGTTTATGGAAATATTAATGCAACACAACTCTGTTTGGTGCCGGGCTTGATAATTCCAGCAAAGTTTAAAGTTCCTGAATTGATAAATATGATGGATCCTCGTGTCCGAGAAGTCTCTTATAATGTACTGTAG

Protein sequence

MEEQDKDMDKMRQEINNLGEQVSKILEFNPVQDTDDPLYPPGFTPSHTHVPQAQTTQHYVAMNPLFAVPPPVPDIEQLEAQAKIQDMGQNENTSAREKLDVLEERLRAIEGTDVYGNINATQLCLVPGLIIPAKFKVPELINMMDPRVREVSYNVL

Homology

[Close]

BLAST of PI0015120 vs. ExPASy TrEMBL
Match: A0A5A7V8B6 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1576G00150 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 2.0e-56
Identity = 115/155 (74.19%), Postives = 129/155 (83.23%), Query Frame = 0


Query: 1   MEEQDKDMDKMRQEINNLGEQVSKILEF----------------NPVQDTDDPLYPPGFT 60
           MEE+DKDMDKMRQEI+NLGEQVSKILE                 NP+QDTDDP+YPPGFT
Sbjct: 1   MEEKDKDMDKMRQEISNLGEQVSKILELLSMGKGKVAVDTAQLSNPIQDTDDPIYPPGFT 60

Query: 61  PSHTHVPQAQTTQHYVAMNPLFAVPPPVPDIEQLEAQAKIQDMGQNENTSAREKLDVLEE 120
           P H +VPQ+QTTQHY+  NPL+ VPP VP +E LEAQAKIQDMGQN+NT A++KLD+LEE
Sbjct: 61  PYHMNVPQSQTTQHYIPTNPLYVVPPIVPGVEHLEAQAKIQDMGQNKNTLAKQKLDILEE 120

Query: 121 RLRAIEGTDVYGNINATQLCLVPGLIIPAKFKVPE 140
           RLRAIEGTDVYGNI+ATQLCLVPGLIIPAKFKVPE
Sbjct: 121 RLRAIEGTDVYGNIDATQLCLVPGLIIPAKFKVPE 155

[Close]

BLAST of PI0015120 vs. ExPASy TrEMBL
Match: A0A1S3CIL9 (uncharacterized protein LOC103501400 OS=Cucumis melo OX=3656 GN=LOC103501400 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 2.0e-56
Identity = 115/155 (74.19%), Postives = 129/155 (83.23%), Query Frame = 0


Query: 1   MEEQDKDMDKMRQEINNLGEQVSKILEF----------------NPVQDTDDPLYPPGFT 60
           MEE+DKDMDKMRQEI+NLGEQVSKILE                 NP+QDTDDP+YPPGFT
Sbjct: 1   MEEKDKDMDKMRQEISNLGEQVSKILELLSMGKGKVAVDTAQLSNPIQDTDDPIYPPGFT 60

Query: 61  PSHTHVPQAQTTQHYVAMNPLFAVPPPVPDIEQLEAQAKIQDMGQNENTSAREKLDVLEE 120
           P H +VPQ+QTTQHY+  NPL+ VPP VP +E LEAQAKIQDMGQN+NT A++KLD+LEE
Sbjct: 61  PYHMNVPQSQTTQHYIPTNPLYVVPPIVPGVEHLEAQAKIQDMGQNKNTLAKQKLDILEE 120

Query: 121 RLRAIEGTDVYGNINATQLCLVPGLIIPAKFKVPE 140
           RLRAIEGTDVYGNI+ATQLCLVPGLIIPAKFKVPE
Sbjct: 121 RLRAIEGTDVYGNIDATQLCLVPGLIIPAKFKVPE 155

[Close]

BLAST of PI0015120 vs. ExPASy TrEMBL
Match: A0A5D3CXD6 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003760 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 4.6e-56
Identity = 118/155 (76.13%), Postives = 127/155 (81.94%), Query Frame = 0


Query: 1   MEEQDKDMDKMRQEINNLGEQVSKILEF----------------NPVQDTDDPLYPPGFT 60
           MEE+DKDMDKMRQEINNLGEQVSKILE                 NP+QDTDD +YPPGFT
Sbjct: 1   MEEKDKDMDKMRQEINNLGEQVSKILELLSMGKGKVAVDTAQSSNPIQDTDDHIYPPGFT 60

Query: 61  PSHTHVPQAQTTQHYVAMNPLFAVPPPVPDIEQLEAQAKIQDMGQNENTSAREKLDVLEE 120
           P H +VPQ+QTTQHYV  NPL+ VPP VP IE LEAQAKIQDMGQNENT A++KLDVLEE
Sbjct: 61  PYHMNVPQSQTTQHYVPTNPLYVVPPIVPGIEHLEAQAKIQDMGQNENTPAKQKLDVLEE 120

Query: 121 RLRAIEGTDVYGNINATQLCLVPGLIIPAKFKVPE 140
           RLRAIEGTDVYGNI+ATQLCLVP LIIPAKFKVPE
Sbjct: 121 RLRAIEGTDVYGNIDATQLCLVPDLIIPAKFKVPE 155

[Close]

BLAST of PI0015120 vs. ExPASy TrEMBL
Match: A0A5A7T5W6 (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00370 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 6.0e-56
Identity = 117/155 (75.48%), Postives = 127/155 (81.94%), Query Frame = 0


Query: 1   MEEQDKDMDKMRQEINNLGEQVSKILEF----------------NPVQDTDDPLYPPGFT 60
           MEE+DKDMDKMRQEINNLGEQVSKILE                 NP+QDTDDP+YPPGFT
Sbjct: 1   MEEKDKDMDKMRQEINNLGEQVSKILELLSMGKGKSVVDTAQSSNPIQDTDDPIYPPGFT 60

Query: 61  PSHTHVPQAQTTQHYVAMNPLFAVPPPVPDIEQLEAQAKIQDMGQNENTSAREKLDVLEE 120
           P H +VPQ+QTTQHYV  NPL+ VPP +P IE LEAQAKIQDM QNENT A++KLDVLEE
Sbjct: 61  PYHINVPQSQTTQHYVPTNPLYVVPPIIPGIEHLEAQAKIQDMEQNENTPAKQKLDVLEE 120

Query: 121 RLRAIEGTDVYGNINATQLCLVPGLIIPAKFKVPE 140
           RLRAIE TDVYGNI+ATQLCLVPGLIIPAKFKVPE
Sbjct: 121 RLRAIEETDVYGNIDATQLCLVPGLIIPAKFKVPE 155

[Close]

BLAST of PI0015120 vs. ExPASy TrEMBL
Match: A0A5A7T0H8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00180 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 6.0e-56
Identity = 117/155 (75.48%), Postives = 127/155 (81.94%), Query Frame = 0


Query: 1   MEEQDKDMDKMRQEINNLGEQVSKILEF----------------NPVQDTDDPLYPPGFT 60
           MEE+DKDMDKMRQEINNLGEQVSKILE                 NP+QDTDDP+YPPGFT
Sbjct: 1   MEEKDKDMDKMRQEINNLGEQVSKILELLSMGKGKAVVDTAQSSNPIQDTDDPIYPPGFT 60

Query: 61  PSHTHVPQAQTTQHYVAMNPLFAVPPPVPDIEQLEAQAKIQDMGQNENTSAREKLDVLEE 120
           P H +VPQ+QTTQHYV  NPL+ VPP +P IE LEAQAKIQDM QNENT A++KLDVLEE
Sbjct: 61  PYHINVPQSQTTQHYVPTNPLYVVPPIIPGIEHLEAQAKIQDMEQNENTPAKQKLDVLEE 120

Query: 121 RLRAIEGTDVYGNINATQLCLVPGLIIPAKFKVPE 140
           RLRAIE TDVYGNI+ATQLCLVPGLIIPAKFKVPE
Sbjct: 121 RLRAIEETDVYGNIDATQLCLVPGLIIPAKFKVPE 155

[Close]

BLAST of PI0015120 vs. NCBI nr
Match: XP_031742360.1 (uncharacterized protein LOC116404324 [Cucumis sativus])

HSP 1 Score: 239.6 bits (610), Expect = 1.8e-59
Identity = 123/155 (79.35%), Postives = 130/155 (83.87%), Query Frame = 0


Query: 1   MEEQDKDMDKMRQEINNLGEQVSKILEF----------------NPVQDTDDPLYPPGFT 60
           MEEQDKDMDKMRQ+INNLGEQVSKILE                 NPVQDTDDP+YPPGFT
Sbjct: 1   MEEQDKDMDKMRQDINNLGEQVSKILELLSAGKGKVVVETAQSSNPVQDTDDPIYPPGFT 60

Query: 61  PSHTHVPQAQTTQHYVAMNPLFAVPPPVPDIEQLEAQAKIQDMGQNENTSAREKLDVLEE 120
           P H +  Q+QT QHYVAMNPLF VPPPVPDIEQLEAQAKIQDMGQNENT A++KLDVLEE
Sbjct: 61  PRHMNATQSQTAQHYVAMNPLFDVPPPVPDIEQLEAQAKIQDMGQNENTPAKQKLDVLEE 120

Query: 121 RLRAIEGTDVYGNINATQLCLVPGLIIPAKFKVPE 140
           RLRAIEGTDVYGNI+ATQLCLVPGLIIP KFKVPE
Sbjct: 121 RLRAIEGTDVYGNIDATQLCLVPGLIIPTKFKVPE 155

[Close]

BLAST of PI0015120 vs. NCBI nr
Match: XP_031741309.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC105435093 [Cucumis sativus])

HSP 1 Score: 238.0 bits (606), Expect = 5.3e-59
Identity = 122/155 (78.71%), Postives = 129/155 (83.23%), Query Frame = 0


Query: 1   MEEQDKDMDKMRQEINNLGEQVSKILEF----------------NPVQDTDDPLYPPGFT 60
           MEEQDKDMDKMRQ+INNLGEQVSKILE                 NPVQDTDDP+YPPGFT
Sbjct: 1   MEEQDKDMDKMRQDINNLGEQVSKILELLSAGKGKVVVETAQSSNPVQDTDDPIYPPGFT 60

Query: 61  PSHTHVPQAQTTQHYVAMNPLFAVPPPVPDIEQLEAQAKIQDMGQNENTSAREKLDVLEE 120
           P H +  Q+QT QHYVAMNPLF VPPPVPDIEQLE QAKIQDMGQNENT A++KLDVLEE
Sbjct: 61  PRHMNATQSQTAQHYVAMNPLFDVPPPVPDIEQLETQAKIQDMGQNENTPAKQKLDVLEE 120

Query: 121 RLRAIEGTDVYGNINATQLCLVPGLIIPAKFKVPE 140
           RLRAIEGTDVYGNI+ATQLCLVPGLIIP KFKVPE
Sbjct: 121 RLRAIEGTDVYGNIDATQLCLVPGLIIPTKFKVPE 155

[Close]

BLAST of PI0015120 vs. NCBI nr
Match: XP_031738857.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC116402780 [Cucumis sativus])

HSP 1 Score: 238.0 bits (606), Expect = 5.3e-59
Identity = 122/155 (78.71%), Postives = 129/155 (83.23%), Query Frame = 0


Query: 1   MEEQDKDMDKMRQEINNLGEQVSKILEF----------------NPVQDTDDPLYPPGFT 60
           MEEQDKDMDKMRQ+INNLGEQVSKILE                 NPVQDTDDP+YPPGFT
Sbjct: 1   MEEQDKDMDKMRQDINNLGEQVSKILELLSAGKGKVVVETAQSSNPVQDTDDPIYPPGFT 60

Query: 61  PSHTHVPQAQTTQHYVAMNPLFAVPPPVPDIEQLEAQAKIQDMGQNENTSAREKLDVLEE 120
           P H +  Q+QT QHYVAMNPLF VPPPVPDIEQLE QAKIQDMGQNENT A++KLDVLEE
Sbjct: 61  PRHMNATQSQTAQHYVAMNPLFDVPPPVPDIEQLETQAKIQDMGQNENTPAKQKLDVLEE 120

Query: 121 RLRAIEGTDVYGNINATQLCLVPGLIIPAKFKVPE 140
           RLRAIEGTDVYGNI+ATQLCLVPGLIIP KFKVPE
Sbjct: 121 RLRAIEGTDVYGNIDATQLCLVPGLIIPTKFKVPE 155

[Close]

BLAST of PI0015120 vs. NCBI nr
Match: XP_031737553.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC116402446 [Cucumis sativus])

HSP 1 Score: 238.0 bits (606), Expect = 5.3e-59
Identity = 122/155 (78.71%), Postives = 129/155 (83.23%), Query Frame = 0


Query: 1   MEEQDKDMDKMRQEINNLGEQVSKILEF----------------NPVQDTDDPLYPPGFT 60
           MEEQDKDMDKMRQ+INNLGEQVSKILE                 NPVQDTDDP+YPPGFT
Sbjct: 1   MEEQDKDMDKMRQDINNLGEQVSKILELLSAGKGKVVVETAQSSNPVQDTDDPIYPPGFT 60

Query: 61  PSHTHVPQAQTTQHYVAMNPLFAVPPPVPDIEQLEAQAKIQDMGQNENTSAREKLDVLEE 120
           P H +  Q+QT QHYVAMNPLF VPPPVPDIEQLE QAKIQDMGQNENT A++KLDVLEE
Sbjct: 61  PRHMNATQSQTAQHYVAMNPLFDVPPPVPDIEQLETQAKIQDMGQNENTPAKQKLDVLEE 120

Query: 121 RLRAIEGTDVYGNINATQLCLVPGLIIPAKFKVPE 140
           RLRAIEGTDVYGNI+ATQLCLVPGLIIP KFKVPE
Sbjct: 121 RLRAIEGTDVYGNIDATQLCLVPGLIIPTKFKVPE 155

[Close]

BLAST of PI0015120 vs. NCBI nr
Match: XP_031742474.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC116404360 [Cucumis sativus])

HSP 1 Score: 238.0 bits (606), Expect = 5.3e-59
Identity = 122/155 (78.71%), Postives = 129/155 (83.23%), Query Frame = 0


Query: 1   MEEQDKDMDKMRQEINNLGEQVSKILEF----------------NPVQDTDDPLYPPGFT 60
           MEEQDKDMDKMRQ+INNLGEQVSKILE                 NPVQDTDDP+YPPGFT
Sbjct: 1   MEEQDKDMDKMRQDINNLGEQVSKILELLSAGKGKVVVETAQSSNPVQDTDDPIYPPGFT 60

Query: 61  PSHTHVPQAQTTQHYVAMNPLFAVPPPVPDIEQLEAQAKIQDMGQNENTSAREKLDVLEE 120
           P H +  Q+QT QHYVAMNPLF VPPPVPDIEQLE QAKIQDMGQNENT A++KLDVLEE
Sbjct: 61  PRHMNATQSQTAQHYVAMNPLFDVPPPVPDIEQLETQAKIQDMGQNENTPAKQKLDVLEE 120

Query: 121 RLRAIEGTDVYGNINATQLCLVPGLIIPAKFKVPE 140
           RLRAIEGTDVYGNI+ATQLCLVPGLIIP KFKVPE
Sbjct: 121 RLRAIEGTDVYGNIDATQLCLVPGLIIPTKFKVPE 155

The following BLAST results are available for this feature:

BLAST of PI0015120 vs.


Match Name	E-value	Identity	Description

BLAST of PI0015120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V8B6	2.0e-56	74.19	Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157...	[more]
A0A1S3CIL9	2.0e-56	74.19	uncharacterized protein LOC103501400 OS=Cucumis melo OX=3656 GN=LOC103501400 PE=...	[more]
A0A5D3CXD6	4.6e-56	76.13	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7T5W6	6.0e-56	75.48	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein...	[more]
A0A5A7T0H8	6.0e-56	75.48	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0015120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031742360.1	1.8e-59	79.35	uncharacterized protein LOC116404324 [Cucumis sativus]	[more]
XP_031741309.1	5.3e-59	78.71	LOW QUALITY PROTEIN: uncharacterized protein LOC105435093 [Cucumis sativus]	[more]
XP_031738857.1	5.3e-59	78.71	LOW QUALITY PROTEIN: uncharacterized protein LOC116402780 [Cucumis sativus]	[more]
XP_031737553.1	5.3e-59	78.71	LOW QUALITY PROTEIN: uncharacterized protein LOC116402446 [Cucumis sativus]	[more]
XP_031742474.1	5.3e-59	78.71	LOW QUALITY PROTEIN: uncharacterized protein LOC116404360 [Cucumis sativus]	[more]

BLAST of PI0015120 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 92..112
None	No IPR available	COILS	Coil	Coil	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0015120.1	PI0015120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity