PI0015112 (gene) Melon (PI 482460) v1

Overview


Name	PI0015112
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr01: 6874494 .. 6875539 (-)
RNA-Seq Expression	PI0015112
Synteny	PI0015112

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAACGCCCAATCATCTGGTTCATCATCCTCCACCATGAACATTCCAAGCTTCAGCACACCTTCCCTAGATCAACTTCTGAACCATGTAACAACAATCAAGCTTGGTAGAGGAAATTATTTGTTGTGGAGGACCATTGGCCTTCCCATCCTGAGGAGCCATAAACTTGAAGGTTACATACTTGGAGAAATTACTTGTCCTTTGAAATTTATAGGACAAAGTACAAATGAGATCAATACCACAGTAGAAGCCACCGTTGCGGAAGGATCCAGTTTCTCAGACCATTGCAGTTGAAAGCACTGTGAGCCAAACAATAGGTAGTGTTGTTAATCCAGCTTATGAATCATGGTTTGTAGTCGATCAACTTCTTCTGGGATGACTTTACAATTCAATGACACCATAAGTTGCTACACAGTTGATGAGCTATGAACACTCGCTTGAACTATGGATAGCGATACAAAGGCTGTTCGGAGTCCAATCTAAGAGCTGAGGAAGATTATCTCCGTCAAACGTTTCAACAAACATGTAAAGGTAACACTACTCTATGGTCAAACGTTTCAACAAACATGGAAAGGTAACACTACTATGTCTGAGTATTTAAGACTGATGAAATGCACTCTGATAATTTAGGGATGGATGGAAGTCTCGTTCCAGAGAGAGCCCTAGTTTTTCAAGTTTTATTGGGACTTGATGAAGATTATAACCCAGTGGTGGCTACCATTCAAGCAAGACCAACCATCTCTTGGCTAGATATGCAGTCTAAACTACTTTCATACGAACAGACTGATTTTTCAAAATACTCAGAGGACAACAACTCAAGCAATGGACCTTCAGTCAACATGGCCAGTGGAAGAGGAAACAATAGTGGACAAAGGGTCAGGGCTCAAGTCAAAATAATAGTGGAAGATCATCATTTAATGGACAACGAGGAGGCAGAGGCCGTGGAAGAGGACGTTATCGTCCGACTTGCCAAAAATGTGGAAAAATTGGGCATACTGCAGACATATGTTATAATAGATTCAACAAAGAGTTTGGTGCTCTAA

mRNA sequence

ATGGCCAACGCCCAATCATCTGGTTCATCATCCTCCACCATGAACATTCCAAGCTTCAGCACACCTTCCCTAGATCAACTTCTGAACCATGTAACAACAATCAAGCTTGGTAGAGGAAATTATTTGTTGTGGAGGACCATTGGCCTTCCCATCCTGAGGAGCCATAAACTTGAAGGGATGGATGGAAGTCTCGTTCCAGAGAGAGCCCTAGTTTTTCAAGTTTTATTGGGACTTGATGAAGATTATAACCCAGTGGTGGCTACCATTCAAGCAAGACCAACCATCTCTTGGCTAGATATGCAGTCTAAACTACTTTCATACGAACAGACTGATTTTTCAAAATACTCAGAGGACAACAACTCAAGCAATGGACCTTCAGTCAACATGGCCAGTGGAAGAGGAAACAATAGTGGACAAAGGGTCAGGGCTCAAGTCAAAATAATAGTGGAAGATCATCATTTAATGGACAACGAGGAGGCAGAGGCCGTGGAAGAGGACGTTATCGTCCGACTTGCCAAAAATGTGGAAAAATTGGGCATACTGCAGACATATGTTATAATAGATTCAACAAAGAGTTTGGTGCTCTAA

Coding sequence (CDS)

ATGGCCAACGCCCAATCATCTGGTTCATCATCCTCCACCATGAACATTCCAAGCTTCAGCACACCTTCCCTAGATCAACTTCTGAACCATGTAACAACAATCAAGCTTGGTAGAGGAAATTATTTGTTGTGGAGGACCATTGGCCTTCCCATCCTGAGGAGCCATAAACTTGAAGGGATGGATGGAAGTCTCGTTCCAGAGAGAGCCCTAGTTTTTCAAGTTTTATTGGGACTTGATGAAGATTATAACCCAGTGGTGGCTACCATTCAAGCAAGACCAACCATCTCTTGGCTAGATATGCAGTCTAAACTACTTTCATACGAACAGACTGATTTTTCAAAATACTCAGAGGACAACAACTCAAGCAATGGACCTTCAGTCAACATGGCCAGTGGAAGAGGAAACAATAGTGGACAAAGGGTCAGGGCTCAAGTCAAAATAATAGTGGAAGATCATCATTTAATGGACAACGAGGAGGCAGAGGCCGTGGAAGAGGACGTTATCGTCCGACTTGCCAAAAATGTGGAAAAATTGGGCATACTGCAGACATATGTTATAATAGATTCAACAAAGAGTTTGGTGCTCTAA

Protein sequence

MANAQSSGSSSSTMNIPSFSTPSLDQLLNHVTTIKLGRGNYLLWRTIGLPILRSHKLEGMDGSLVPERALVFQVLLGLDEDYNPVVATIQARPTISWLDMQSKLLSYEQTDFSKYSEDNNSSNGPSVNMASGRGNNSGQRVRAQVKIIVEDHHLMDNEEAEAVEEDVIVRLAKNVEKLGILQTYVIIDSTKSLVL

Homology

[Close]

BLAST of PI0015112 vs. ExPASy TrEMBL
Match: A0A5A7TIN2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00010 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 5.6e-11
Identity = 49/150 (32.67%), Postives = 71/150 (47.33%), Query Frame = 0


Query: 10  SSSTMNIPSFSTPSLDQLLNHVTTIKLGRGNYLLWRTIGLPILRSHKL------------ 69
           ++ +++ P FS   L+Q+LNH+TT+KL + NYL  +T+ LP L+ +KL            
Sbjct: 6   TAPSLSTPGFSNSLLNQVLNHLTTVKLDKNNYLSRKTLALPTLKGYKLERHLTGETPCPS 65

Query: 70  ---------------EGMDGSLV------------------------------PERALVF 103
                          EG + ++                                ERAL+ 
Sbjct: 66  KLVLSASSSNTTMTEEGANATVKASRLIERTQDFFGVQSRAEEDFLRQIVSDDKERALIS 125

[Close]

BLAST of PI0015112 vs. ExPASy TrEMBL
Match: A0A0A0LXB7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G496800 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.8e-10
Identity = 42/80 (52.50%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 59  GMDGSLVPERALVFQVLLGLDEDYNPVVATIQARPTISWLDMQSKLLSYEQTDFSKYSED 118
           G   S +P RAL+ QVLLGLDE YNPV+  IQ +P ISWLDMQSKLL +E+    + S+ 
Sbjct: 91  GQAESPIPRRALISQVLLGLDEVYNPVIVVIQGKPEISWLDMQSKLLIFEKRLKHQNSQK 150

Query: 119 N--NSSNGPSVNMASGRGNN 137
           N  N     ++NMA  R NN
Sbjct: 151 NIGNIVQNATINMAQSRNNN 170

[Close]

BLAST of PI0015112 vs. ExPASy TrEMBL
Match: A0A5A7SIT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00360 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-09
Identity = 74/280 (26.43%), Postives = 99/280 (35.36%), Query Frame = 0


Query: 1   MANAQSSGSSSSTMNIPSFSTPSLDQLLNHVTTIKLGRGNYLLWRTIGLPILRSHKLE-- 60
           MANAQ + +  S ++   FS P L+Q+LN + T+KL R NYLLW+T+ LPIL+ +KLE  
Sbjct: 1   MANAQPTAAPPS-LSSAGFSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGH 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  LTGETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGWL 120

Query: 121 ------------------------------------------------------------ 141
                                                                       
Sbjct: 121 YNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLV 180

[Close]

BLAST of PI0015112 vs. ExPASy TrEMBL
Match: A0A1S4E1U9 (uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.1e-09
Identity = 68/242 (28.10%), Postives = 98/242 (40.50%), Query Frame = 0


Query: 1   MANAQSSGSSSSTMNIPSFSTPSLDQLLNHVTTIKLGRGNYLLWRTIGLPILRSHKLEG- 60
           MANAQ + +  S ++   FS P L+Q+LN +TT+KL R NYLLW+T+ LPIL+ +KLEG 
Sbjct: 1   MANAQPTAAPPS-LSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGH 60

Query: 61  -----------------------------------------------------------M 120
                                                                      +
Sbjct: 61  LTAETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWL 120

Query: 121 DGSLVPE---------------------------------RALVFQVLLGLDEDYNPVVA 147
             S+ P+                                 R ++     GLDE YN V+ 
Sbjct: 121 YNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGLDEVYNLVIV 180

[Close]

BLAST of PI0015112 vs. ExPASy TrEMBL
Match: A0A1S4E1U6 (uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.1e-09
Identity = 68/242 (28.10%), Postives = 98/242 (40.50%), Query Frame = 0


Query: 1   MANAQSSGSSSSTMNIPSFSTPSLDQLLNHVTTIKLGRGNYLLWRTIGLPILRSHKLEG- 60
           MANAQ + +  S ++   FS P L+Q+LN +TT+KL R NYLLW+T+ LPIL+ +KLEG 
Sbjct: 1   MANAQPTAAPPS-LSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGH 60

Query: 61  -----------------------------------------------------------M 120
                                                                      +
Sbjct: 61  LTAETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWL 120

Query: 121 DGSLVPE---------------------------------RALVFQVLLGLDEDYNPVVA 147
             S+ P+                                 R ++     GLDE YN V+ 
Sbjct: 121 YNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGLDEVYNLVIV 180

[Close]

BLAST of PI0015112 vs. NCBI nr
Match: KAA0043233.1 (hypothetical protein E6C27_scaffold110G001150 [Cucumis melo var. makuwa] >TYK29297.1 hypothetical protein E5676_scaffold129G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-10
Identity = 49/150 (32.67%), Postives = 71/150 (47.33%), Query Frame = 0


Query: 10  SSSTMNIPSFSTPSLDQLLNHVTTIKLGRGNYLLWRTIGLPILRSHKL------------ 69
           ++ +++ P FS   L+Q+LNH+TT+KL + NYL  +T+ LP L+ +KL            
Sbjct: 6   TAPSLSTPGFSNSLLNQVLNHLTTVKLDKNNYLSRKTLALPTLKGYKLERHLTGETPCPS 65

Query: 70  ---------------EGMDGSLV------------------------------PERALVF 103
                          EG + ++                                ERAL+ 
Sbjct: 66  KLVLSASSSNTTMTEEGANATVKASRLIERTQDFFGVQSRAEEDFLRQIVSDDKERALIS 125

[Close]

BLAST of PI0015112 vs. NCBI nr
Match: KGN65684.1 (hypothetical protein Csa_019689 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 5.7e-10
Identity = 42/80 (52.50%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 59  GMDGSLVPERALVFQVLLGLDEDYNPVVATIQARPTISWLDMQSKLLSYEQTDFSKYSED 118
           G   S +P RAL+ QVLLGLDE YNPV+  IQ +P ISWLDMQSKLL +E+    + S+ 
Sbjct: 91  GQAESPIPRRALISQVLLGLDEVYNPVIVVIQGKPEISWLDMQSKLLIFEKRLKHQNSQK 150

Query: 119 N--NSSNGPSVNMASGRGNN 137
           N  N     ++NMA  R NN
Sbjct: 151 NIGNIVQNATINMAQSRNNN 170

[Close]

BLAST of PI0015112 vs. NCBI nr
Match: XP_038902487.1 (uncharacterized protein LOC120089143 [Benincasa hispida])

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-09
Identity = 46/99 (46.46%), Postives = 62/99 (62.63%), Query Frame = 0


Query: 49  LPILRSHKLE-GMDGSLVPERALVFQVLLGLDEDYNPVVATIQARPTISWLDMQSKLLSY 108
           L ++++H    G+ GS VP RALV QVLLGLDE++NP VATIQ R  ISW +MQ++LL++
Sbjct: 205 LRVMKTHSDNLGLTGSPVPTRALVSQVLLGLDEEFNPFVATIQGRSEISWTNMQTELLAF 264

Query: 109 EQTDFSKYSEDNNSSNGPSVNMASGR-GNNSGQRVRAQV 146
           E+    + + +NN   G   N    R  NNS  R   QV
Sbjct: 265 EK----RQTNNNNQRGGSGRNRGRRRWNNNSYNRPTCQV 299

[Close]

BLAST of PI0015112 vs. NCBI nr
Match: XP_038904321.1 (uncharacterized protein LOC120090675 [Benincasa hispida])

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-09
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 62  GSLVPERALVFQVLLGLDEDYNPVVATIQARPTISWLDMQSKLLSYEQTDFSKYSEDNNS 121
           GS VP RALV QVLLGLDE+YN +VATIQ R  +SWLDMQSKLL YE+    + ++ NN+
Sbjct: 132 GSPVPPRALVLQVLLGLDEEYNAIVATIQGRADMSWLDMQSKLLLYERRLEHQSNKKNNN 191

Query: 122 SNGPS 127
              PS
Sbjct: 192 RLQPS 196

[Close]

BLAST of PI0015112 vs. NCBI nr
Match: KAA0026100.1 (uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 3.7e-09
Identity = 74/280 (26.43%), Postives = 99/280 (35.36%), Query Frame = 0


Query: 1   MANAQSSGSSSSTMNIPSFSTPSLDQLLNHVTTIKLGRGNYLLWRTIGLPILRSHKLE-- 60
           MANAQ + +  S ++   FS P L+Q+LN + T+KL R NYLLW+T+ LPIL+ +KLE  
Sbjct: 1   MANAQPTAAPPS-LSSAGFSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGH 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  LTGETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGWL 120

Query: 121 ------------------------------------------------------------ 141
                                                                       
Sbjct: 121 YNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLV 180

The following BLAST results are available for this feature:

BLAST of PI0015112 vs.


Match Name	E-value	Identity	Description

BLAST of PI0015112 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TIN2	5.6e-11	32.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LXB7	2.8e-10	52.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G496800 PE=4 SV=1	[more]
A0A5A7SIT7	1.8e-09	26.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S4E1U9	3.1e-09	28.10	uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4E1U6	3.1e-09	28.10	uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of PI0015112 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043233.1	1.2e-10	32.67	hypothetical protein E6C27_scaffold110G001150 [Cucumis melo var. makuwa] >TYK292...	[more]
KGN65684.1	5.7e-10	52.50	hypothetical protein Csa_019689 [Cucumis sativus]	[more]
XP_038902487.1	1.3e-09	46.46	uncharacterized protein LOC120089143 [Benincasa hispida]	[more]
XP_038904321.1	1.7e-09	61.54	uncharacterized protein LOC120090675 [Benincasa hispida]	[more]
KAA0026100.1	3.7e-09	26.43	uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa]	[more]

BLAST of PI0015112 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0015112.1	PI0015112.1	mRNA