PI0015053 (gene) Melon (PI 482460) v1

Overview
NamePI0015053
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Locationchr05: 5121986 .. 5122756 (-)
RNA-Seq ExpressionPI0015053
SyntenyPI0015053
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAACACTAGACGCAGAACCTATACTCCTAAAGTCCCTGTCAAAAAGATTTCCACACCTAAAGATGTTGGTCCCTTTGTCAAGCGCTTGCGAATTAACAAACATGGTGTTCGTATGCGTGGTACTACCAAGAAAGCTTCCACCTCTGTGCATCCTTCTACACCCGTTTCATCTAATCTTGTGGTACCTGCTCCTCCTCCCTCTCTTCTTGATTCTCCTGTTTATCCTGTGGTTCCTGATTCTTCATTGTCTTCCTCTGCCTCTGATACTCATCCTAGAAGTAGTCATTCTCCTTCACAGCTTTCTAATCACTTAAACACGCTTCCTACCCATGATTCTGTTAATCAGTCTCCCGTGTCTTCTGCTCATACTCTTCATGAAAATGTGTGTGCTTCCACTACTTCACCTTCATCTTCTTCTCAGGATCACATTCCTCTGGCCCACTTACTTCGAAGAAATCCCAGTACTACTGTCCTTGAGTCAACACCAACTAACCCTAGTACTTCTCCTGTCACTCAACCTACCTTTGAATCAACTCATACTATTAATGGTTCTCCTCCTGTGCCTCAACCCAACCCTGCTTCCGTTCCTTATTCAAATTCTCCTTCTCCTCCTACTCAACCTAAAACTAAGGCAAAAAACAAACGTATTTCTACAAAGTCTGGTAGAAGAAAGGTGCCCCTGCATGTTAATCCTGTCCCCATTGATGGTCTTTCTTTCCATCATGAGGCTCATGTCCACATGTGGAAATATGTGGTTCAACGATGA

mRNA sequence

ATGGTTAACACTAGACGCAGAACCTATACTCCTAAAGTCCCTGTCAAAAAGATTTCCACACCTAAAGATGTTGGTCCCTTTGTCAAGCGCTTGCGAATTAACAAACATGGTGTTCGTATGCGTGGTACTACCAAGAAAGCTTCCACCTCTGTGCATCCTTCTACACCCGTTTCATCTAATCTTGTGGTACCTGCTCCTCCTCCCTCTCTTCTTGATTCTCCTGTTTATCCTGTGGTTCCTGATTCTTCATTGTCTTCCTCTGCCTCTGATACTCATCCTAGAAGTAGTCATTCTCCTTCACAGCTTTCTAATCACTTAAACACGCTTCCTACCCATGATTCTGTTAATCAGTCTCCCGTGTCTTCTGCTCATACTCTTCATGAAAATGTGTGTGCTTCCACTACTTCACCTTCATCTTCTTCTCAGGATCACATTCCTCTGGCCCACTTACTTCGAAGAAATCCCAGTACTACTGTCCTTGAGTCAACACCAACTAACCCTAGTACTTCTCCTGTCACTCAACCTACCTTTGAATCAACTCATACTATTAATGGTTCTCCTCCTGTGCCTCAACCCAACCCTGCTTCCGTTCCTTATTCAAATTCTCCTTCTCCTCCTACTCAACCTAAAACTAAGGCAAAAAACAAACGTATTTCTACAAAGTCTGGTAGAAGAAAGGTGCCCCTGCATGTTAATCCTGTCCCCATTGATGGTCTTTCTTTCCATCATGAGGCTCATGTCCACATGTGGAAATATGTGGTTCAACGATGA

Coding sequence (CDS)

ATGGTTAACACTAGACGCAGAACCTATACTCCTAAAGTCCCTGTCAAAAAGATTTCCACACCTAAAGATGTTGGTCCCTTTGTCAAGCGCTTGCGAATTAACAAACATGGTGTTCGTATGCGTGGTACTACCAAGAAAGCTTCCACCTCTGTGCATCCTTCTACACCCGTTTCATCTAATCTTGTGGTACCTGCTCCTCCTCCCTCTCTTCTTGATTCTCCTGTTTATCCTGTGGTTCCTGATTCTTCATTGTCTTCCTCTGCCTCTGATACTCATCCTAGAAGTAGTCATTCTCCTTCACAGCTTTCTAATCACTTAAACACGCTTCCTACCCATGATTCTGTTAATCAGTCTCCCGTGTCTTCTGCTCATACTCTTCATGAAAATGTGTGTGCTTCCACTACTTCACCTTCATCTTCTTCTCAGGATCACATTCCTCTGGCCCACTTACTTCGAAGAAATCCCAGTACTACTGTCCTTGAGTCAACACCAACTAACCCTAGTACTTCTCCTGTCACTCAACCTACCTTTGAATCAACTCATACTATTAATGGTTCTCCTCCTGTGCCTCAACCCAACCCTGCTTCCGTTCCTTATTCAAATTCTCCTTCTCCTCCTACTCAACCTAAAACTAAGGCAAAAAACAAACGTATTTCTACAAAGTCTGGTAGAAGAAAGGTGCCCCTGCATGTTAATCCTGTCCCCATTGATGGTCTTTCTTTCCATCATGAGGCTCATGTCCACATGTGGAAATATGTGGTTCAACGATGA

Protein sequence

MVNTRRRTYTPKVPVKKISTPKDVGPFVKRLRINKHGVRMRGTTKKASTSVHPSTPVSSNLVVPAPPPSLLDSPVYPVVPDSSLSSSASDTHPRSSHSPSQLSNHLNTLPTHDSVNQSPVSSAHTLHENVCASTTSPSSSSQDHIPLAHLLRRNPSTTVLESTPTNPSTSPVTQPTFESTHTINGSPPVPQPNPASVPYSNSPSPPTQPKTKAKNKRISTKSGRRKVPLHVNPVPIDGLSFHHEAHVHMWKYVVQR
Homology
BLAST of PI0015053 vs. ExPASy TrEMBL
Match: A0A5D3C1J5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00150 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.9e-07
Identity = 47/136 (34.56%), Postives = 73/136 (53.68%), Query Frame = 0

Query: 134 TTSPSSSSQDHIPLAHLLRRNPSTTVLESTPTNPSTSPVTQ-------------PTFEST 193
           T++  S  QDH+PLA LL++     V    P +PS+S  +Q              T E +
Sbjct: 48  TSNMDSDDQDHVPLARLLKQILIPDVSNKLPVDPSSSIHSQEIEDEVEPQYPDIDTAEVS 107

Query: 194 HTINGSPPVPQPNPASVPYSNSPSPPTQPKTKAKNKRISTKSGRRKVPLHVNPVPIDGLS 253
              + +P VP P  A +P   + S P + KT+     I+ K+ R+K+P ++  +PIDG+S
Sbjct: 108 RNDDDNPAVP-PTSADIP---AASKPAEKKTQQMRCNITAKTDRKKIPPNIPSIPIDGIS 167

Query: 254 FHHEAHVHMWKYVVQR 257
           FHH+  +  WK+VVQR
Sbjct: 168 FHHKESIQRWKFVVQR 179

BLAST of PI0015053 vs. ExPASy TrEMBL
Match: A0A5A7V9Y4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold99G00320 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.4e-06
Identity = 44/133 (33.08%), Postives = 67/133 (50.38%), Query Frame = 0

Query: 118 SPVSSAHTLHENVCASTTSPSSSSQDHIPLAHLLRRNPSTTVLESTPTNPSTSPVTQPTF 177
           +PVS A   H+   A+ +   S  QD++PL  LL++      +E  P++PS S  +Q   
Sbjct: 9   APVSPAVHAHQGSEATISDMDSDDQDNVPLIRLLKKPSEPVTVERLPSDPSGSIHSQ--- 68

Query: 178 ESTHTINGSPPVPQPNPASVPYSNSPSPPTQPKTKAKNKRISTKSGRRKVPLHVNPVPID 237
           ES+ T              +P  + P P   P   +   R+ +  GR+K+P++V  VPID
Sbjct: 69  ESSST----------EGTEIPPEDIPPPTDDPIAPSSEGRLESPKGRKKIPVNVPSVPID 128

Query: 238 GLSFHHEAHVHMW 251
           G+SFHHE  V  W
Sbjct: 129 GISFHHEESVQRW 128

BLAST of PI0015053 vs. ExPASy TrEMBL
Match: A0A1S3BZY6 (uncharacterized protein LOC103495034 OS=Cucumis melo OX=3656 GN=LOC103495034 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.4e-06
Identity = 47/141 (33.33%), Postives = 71/141 (50.35%), Query Frame = 0

Query: 118 SPVSSAHTLHENVCASTTSPSSSSQDHIPLAHLLRRNPSTTVLESTPTNPSTS--PVTQP 177
           +PVSS    H    A+ +   S  QD++ L    RR+P+     S   +PS S  P +QP
Sbjct: 85  APVSSTVHAHRASEATESDMDSDDQDNVSLIRDPRRSPAVHSGHSPSVHPSRSKLPTSQP 144

Query: 178 TFESTHTINGSPPVPQPNPASVPYSNSPSPPTQPKTKAKNKRISTKSGRRKVPLHVNPVP 237
                H    +    +      P S+    P + KT+   + ++ K+GR+K+P +V  VP
Sbjct: 145 DVVLAHIPEIATTAREKQTDGRPESSKGPKPPKRKTQQARRNVTIKTGRKKIPANVPSVP 204

Query: 238 IDGLSFHHEAHVHMWKYVVQR 257
           ID +SFHHE  V  WK+V+QR
Sbjct: 205 IDEISFHHEESVQCWKFVMQR 225

BLAST of PI0015053 vs. ExPASy TrEMBL
Match: A0A5D3D7Z9 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00540 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.1e-06
Identity = 49/137 (35.77%), Postives = 69/137 (50.36%), Query Frame = 0

Query: 118 SPVSSAHTLHENVCASTTSPSSSSQDHIPLAHLLRRNPSTTVLESTPTNPSTSPVTQPTF 177
           +PVS     H    A+ +   S  QD++PL HLL++       E  P NPS S  +Q + 
Sbjct: 428 APVSHVVHAHRASKATVSDMDSHDQDNVPLIHLLKKPSELVTTERPPYNPSGSIHSQESS 487

Query: 178 ESTHTINGSPPVPQPN-----PASVPYSNSPSPPTQPKTKAKNKR--ISTKSGRRKVPLH 237
            +  T      +P P      P+S     SP  P  PK K +  R  ++TK+ R+K+P +
Sbjct: 488 STEGTEIPLEDIPPPTDDPFAPSSEGRPESPKGPKPPKRKTQQARRNVTTKTDRKKIPTN 547

Query: 238 VNPVPIDGLSFHHEAHV 248
           V PV IDG+SFHHE  V
Sbjct: 548 VLPVSIDGISFHHEESV 564

BLAST of PI0015053 vs. ExPASy TrEMBL
Match: A0A5D3CB76 (Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00540 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-05
Identity = 67/248 (27.02%), Postives = 101/248 (40.73%), Query Frame = 0

Query: 15  VKKISTPKDVGPFVKRLRINKHGVRMRGTTKKASTSVHPSTPVSSNLVVPAPPPSLLDSP 74
           VKKI+ P D  P +    +N + +  +     +S  V   TP    +    P PSL  SP
Sbjct: 272 VKKITAP-DAVPKI----VNDNVLSDQSQESSSSEGVFVPTPGLHQMSFVEPGPSLYTSP 331

Query: 75  VYPVVPDSSLSSSASDTHPRSSHSPSQLSNHLNTLPTHDSVNQ-SPVSSAHTLHENVCAS 134
           + P +PD +  + + D  P +S   +   N  N  P  D+V+   PV+      E     
Sbjct: 332 IQPPIPDIAAPTDSQDVPPVASEEGTDALNEQNDTP--DNVDDVEPVAPGDHNEEVHVTD 391

Query: 135 TTSPSSSSQDHIPLAHLLRRNPSTTVLESTPTNPSTSPVTQPTFESTHTINGSPPVPQPN 194
           +  PS+S +                                                   
Sbjct: 392 SVDPSASQE--------------------------------------------------- 451

Query: 195 PASVPYSNSPSPPTQPKTKAK-----NKRISTKSGRRKVPLHVNPVPIDGLSFHHEAHVH 254
                   +PS PT+PKT  K      + I+TK+GR+K+PL+++ VPIDG+SFH E +V 
Sbjct: 452 --------TPSIPTEPKTSRKKGQQLRRNITTKAGRKKIPLNISFVPIDGISFHLEENVQ 453

Query: 255 MWKYVVQR 257
            WK+VVQR
Sbjct: 512 RWKFVVQR 453

BLAST of PI0015053 vs. NCBI nr
Match: KAA0047105.1 (uncharacterized protein E6C27_scaffold466G00790 [Cucumis melo var. makuwa] >TYK05052.1 uncharacterized protein E5676_scaffold1317G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 1.0e-06
Identity = 47/136 (34.56%), Postives = 73/136 (53.68%), Query Frame = 0

Query: 134 TTSPSSSSQDHIPLAHLLRRNPSTTVLESTPTNPSTSPVTQ-------------PTFEST 193
           T++  S  QDH+PLA LL++     V    P +PS+S  +Q              T E +
Sbjct: 48  TSNMDSDDQDHVPLARLLKQILIPDVSNKLPVDPSSSIHSQEIEDEVEPQYPDIDTAEVS 107

Query: 194 HTINGSPPVPQPNPASVPYSNSPSPPTQPKTKAKNKRISTKSGRRKVPLHVNPVPIDGLS 253
              + +P VP P  A +P   + S P + KT+     I+ K+ R+K+P ++  +PIDG+S
Sbjct: 108 RNDDDNPAVP-PTSADIP---AASKPAEKKTQQMRCNITAKTDRKKIPPNIPSIPIDGIS 167

Query: 254 FHHEAHVHMWKYVVQR 257
           FHH+  +  WK+VVQR
Sbjct: 168 FHHKESIQRWKFVVQR 179

BLAST of PI0015053 vs. NCBI nr
Match: XP_008454678.1 (PREDICTED: uncharacterized protein LOC103495034 [Cucumis melo])

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-05
Identity = 47/141 (33.33%), Postives = 71/141 (50.35%), Query Frame = 0

Query: 118 SPVSSAHTLHENVCASTTSPSSSSQDHIPLAHLLRRNPSTTVLESTPTNPSTS--PVTQP 177
           +PVSS    H    A+ +   S  QD++ L    RR+P+     S   +PS S  P +QP
Sbjct: 85  APVSSTVHAHRASEATESDMDSDDQDNVSLIRDPRRSPAVHSGHSPSVHPSRSKLPTSQP 144

Query: 178 TFESTHTINGSPPVPQPNPASVPYSNSPSPPTQPKTKAKNKRISTKSGRRKVPLHVNPVP 237
                H    +    +      P S+    P + KT+   + ++ K+GR+K+P +V  VP
Sbjct: 145 DVVLAHIPEIATTAREKQTDGRPESSKGPKPPKRKTQQARRNVTIKTGRKKIPANVPSVP 204

Query: 238 IDGLSFHHEAHVHMWKYVVQR 257
           ID +SFHHE  V  WK+V+QR
Sbjct: 205 IDEISFHHEESVQCWKFVMQR 225

BLAST of PI0015053 vs. NCBI nr
Match: KAA0060865.1 (uncharacterized protein E6C27_scaffold7015G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-05
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 0

Query: 202 SPSPPTQPKTKAKNKR--ISTKSGRRKVPLHVNPVPIDGLSFHHEAHVHMWKYVVQR 257
           SP  P  PK K +  R  ++TK+GR+K+P +V  VPIDG+SFHHE  V  WK+V+QR
Sbjct: 334 SPKGPKPPKRKTQQARRNVTTKTGRKKIPANVPSVPIDGISFHHEESVQRWKFVMQR 390

BLAST of PI0015053 vs. NCBI nr
Match: TYK25797.1 (uncharacterized protein E5676_scaffold2413G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-05
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 0

Query: 202 SPSPPTQPKTKAKNKR--ISTKSGRRKVPLHVNPVPIDGLSFHHEAHVHMWKYVVQR 257
           SP  P  PK K +  R  ++TK+GR+K+P +V  VPIDG+SFHHE  V  WK+V+QR
Sbjct: 334 SPKGPKPPKRKTQQARRNVTTKTGRKKIPANVPSVPIDGISFHHEESVQRWKFVMQR 390

BLAST of PI0015053 vs. NCBI nr
Match: KAA0064034.1 (uncharacterized protein E6C27_scaffold99G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-05
Identity = 44/133 (33.08%), Postives = 67/133 (50.38%), Query Frame = 0

Query: 118 SPVSSAHTLHENVCASTTSPSSSSQDHIPLAHLLRRNPSTTVLESTPTNPSTSPVTQPTF 177
           +PVS A   H+   A+ +   S  QD++PL  LL++      +E  P++PS S  +Q   
Sbjct: 9   APVSPAVHAHQGSEATISDMDSDDQDNVPLIRLLKKPSEPVTVERLPSDPSGSIHSQ--- 68

Query: 178 ESTHTINGSPPVPQPNPASVPYSNSPSPPTQPKTKAKNKRISTKSGRRKVPLHVNPVPID 237
           ES+ T              +P  + P P   P   +   R+ +  GR+K+P++V  VPID
Sbjct: 69  ESSST----------EGTEIPPEDIPPPTDDPIAPSSEGRLESPKGRKKIPVNVPSVPID 128

Query: 238 GLSFHHEAHVHMW 251
           G+SFHHE  V  W
Sbjct: 129 GISFHHEESVQRW 128

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C1J54.9e-0734.56Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V9Y45.4e-0633.08Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3BZY65.4e-0633.33uncharacterized protein LOC103495034 OS=Cucumis melo OX=3656 GN=LOC103495034 PE=... [more]
A0A5D3D7Z97.1e-0635.77Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5D3CB761.2e-0527.02Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold65... [more]
Match NameE-valueIdentityDescription
KAA0047105.11.0e-0634.56uncharacterized protein E6C27_scaffold466G00790 [Cucumis melo var. makuwa] >TYK0... [more]
XP_008454678.11.1e-0533.33PREDICTED: uncharacterized protein LOC103495034 [Cucumis melo][more]
KAA0060865.11.1e-0552.63uncharacterized protein E6C27_scaffold7015G00020 [Cucumis melo var. makuwa][more]
TYK25797.11.1e-0552.63uncharacterized protein E5676_scaffold2413G00010 [Cucumis melo var. makuwa][more]
KAA0064034.11.1e-0533.08uncharacterized protein E6C27_scaffold99G00320 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 158..186
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 187..205
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 158..231
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..74

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0015053.1PI0015053.1mRNA