PI0015038 (gene) Melon (PI 482460) v1

Overview
NamePI0015038
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Locationchr06: 16034795 .. 16035498 (+)
RNA-Seq ExpressionPI0015038
SyntenyPI0015038
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATATTGCAAGTCAATACCGCAGGAAGCTCTGTGCTCGCGGCTAATCAAATTGATGACATGGGATGTGTGGGATGCGGCGGTCATCATAACACTGATGCATGCCCACTCAATACTGAAACCGTCGCGTTCGTAAGGAACGACCCCTTTTCCAATACCTACAACCCTGGTTGGAGGAACCATCCCAACTTTGGATGGGGAGGATCGGGTCAACAACAAGGGCGACATGGTGGTCAAGGTGACCATCGCGGGGAAGCACCTGGCTTCCACGCGAGGTACCAAAACAATAGACCCCAACAATCCCATCATCAACAGCATCCCACCACCACCGCCTCGTCCACCTCTCCCATGGAAAACCTCCTCCGCGAATACATGCAGAAAAATGATGCTCTTCTGCAAAGCCAAGCTTCATCAATTCGTAATCTGGAGGTACAGTTGGGTCAGCTCGCTAGTGATTTCTCCGGAAGACAGCAAGGATCCCTTCCGAGCAATACAGAAATGCCAAATCAGGCGGGAGGATCTGGTAAAGAGAAGTGTCACGCGGTGACACTACGCAGTGGAAGAAATTTAACCATTCGCGACCCTGATGCTGAACGTAGCTACCCCAATTCTAACTCTACTGCCGAGATTGGCAGTTCAAGTAAAATTCCTAATCTTATAAATTTCCCTTCAACTGATAATGTTTCTTCCTCGCAGAATAA

mRNA sequence

ATGGCAATATTGCAAGTCAATACCGCAGGAAGCTCTGTGCTCGCGGCTAATCAAATTGATGACATGGGATGTGTGGGATGCGGCGGTCATCATAACACTGATGCATGCCCACTCAATACTGAAACCGTCGCGTTCGTAAGGAACGACCCCTTTTCCAATACCTACAACCCTGGTTGGAGGAACCATCCCAACTTTGGATGGGGAGGATCGGGTCAACAACAAGGGCGACATGGTGGTCAAGGTGACCATCGCGGGGAAGCACCTGGCTTCCACGCGAGGTACCAAAACAATAGACCCCAACAATCCCATCATCAACAGCATCCCACCACCACCGCCTCGTCCACCTCTCCCATGGAAAACCTCCTCCGCGAATACATGCAGAAAAATGATGCTCTTCTGCAAAGCCAAGCTTCATCAATTCGTAATCTGGAGGTACAGTTGGGTCAGCTCGCTAGTGATTTCTCCGGAAGACAGCAAGGATCCCTTCCGAGCAATACAGAAATGCCAAATCAGGCGGGAGGATCTGGTAAAGAGAAGTGTCACGCGGTGACACTACGCAGTGGAAGAAATTTAACCATTCGCGACCCTGATGCTGAACGTAGCTACCCCAATTCTAACTCTACTGCCGAGATTGGCAGTTCAAAATAA

Coding sequence (CDS)

ATGGCAATATTGCAAGTCAATACCGCAGGAAGCTCTGTGCTCGCGGCTAATCAAATTGATGACATGGGATGTGTGGGATGCGGCGGTCATCATAACACTGATGCATGCCCACTCAATACTGAAACCGTCGCGTTCGTAAGGAACGACCCCTTTTCCAATACCTACAACCCTGGTTGGAGGAACCATCCCAACTTTGGATGGGGAGGATCGGGTCAACAACAAGGGCGACATGGTGGTCAAGGTGACCATCGCGGGGAAGCACCTGGCTTCCACGCGAGGTACCAAAACAATAGACCCCAACAATCCCATCATCAACAGCATCCCACCACCACCGCCTCGTCCACCTCTCCCATGGAAAACCTCCTCCGCGAATACATGCAGAAAAATGATGCTCTTCTGCAAAGCCAAGCTTCATCAATTCGTAATCTGGAGGTACAGTTGGGTCAGCTCGCTAGTGATTTCTCCGGAAGACAGCAAGGATCCCTTCCGAGCAATACAGAAATGCCAAATCAGGCGGGAGGATCTGGTAAAGAGAAGTGTCACGCGGTGACACTACGCAGTGGAAGAAATTTAACCATTCGCGACCCTGATGCTGAACGTAGCTACCCCAATTCTAACTCTACTGCCGAGATTGGCAGTTCAAAATAA

Protein sequence

MAILQVNTAGSSVLAANQIDDMGCVGCGGHHNTDACPLNTETVAFVRNDPFSNTYNPGWRNHPNFGWGGSGQQQGRHGGQGDHRGEAPGFHARYQNNRPQQSHHQQHPTTTASSTSPMENLLREYMQKNDALLQSQASSIRNLEVQLGQLASDFSGRQQGSLPSNTEMPNQAGGSGKEKCHAVTLRSGRNLTIRDPDAERSYPNSNSTAEIGSSK
Homology
BLAST of PI0015038 vs. ExPASy TrEMBL
Match: A0A5D3D2S0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00800 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 5.0e-29
Identity = 87/181 (48.07%), Postives = 106/181 (58.56%), Query Frame = 0

Query: 1   MAILQVNTAGSSVLAANQIDDMGCVGCGGHHNTDACPLNTETVAFVRNDPFSNTYNPGWR 60
           MA+ QV+  G+ V A  Q+D+M  VGCG  H TDAC LN E  A+V++ P+SNTYN    
Sbjct: 64  MALSQVDAVGNYVQAVKQVDEMRPVGCGEPHTTDACLLNAEIAAYVKSYPYSNTYN---- 123

Query: 61  NHPNFGWGGSGQQQGRHGGQGDHRGEAPGFHARYQNNRPQQS--HHQQHPTTTASSTSPM 120
                               G++RGEAP  H +   +RP  S   HQQ  T T SS S M
Sbjct: 124 -------------------AGNYRGEAPD-HRQRHYDRPHYSAPQHQQATTNTPSSFSSM 183

Query: 121 ENLLREYMQKNDALLQSQASSIRNLEVQLGQLASDFSGRQQGSLPSNTEMPNQAGGSGKE 180
             LLR+YMQ+ DA +QSQ +SI NLE+ LGQLA DFSGR  GSLPSN E+PN   G  K 
Sbjct: 184 VALLRKYMQRKDAFMQSQTTSIINLEIHLGQLAKDFSGRPHGSLPSNIEVPNHNNGVHKN 220

BLAST of PI0015038 vs. ExPASy TrEMBL
Match: A0A6J1DYG0 (uncharacterized protein LOC111025764 OS=Momordica charantia OX=3673 GN=LOC111025764 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.1e-27
Identity = 84/202 (41.58%), Postives = 120/202 (59.41%), Query Frame = 0

Query: 18  QIDDMGCVGCGGHHNTDACPLNTETVAFV-----RN-DPFSNTYNPGWRNHPNFGWGGSG 77
           Q++D+ C  C  +H  D CP N  +V +V     RN +P+SNTYNPGWR+HPNF W G G
Sbjct: 100 QVNDLICSFCSENHIYDXCPHNPASVFYVGHGNNRNFNPYSNTYNPGWRHHPNFSWXGQG 159

Query: 78  QQQGRHGGQGDHRGEAPGFHARYQNNRPQQSHHQQHPT-TTASSTSPMENLLREYMQKND 137
              G + GQ     +      +     PQQ ++Q+  T    ++ S +EN+++EYM + D
Sbjct: 160 GSXGFNQGQSQQNKQPYVPPTQQYIPPPQQRYNQRTQTPPVQNNNSNLENMMKEYMARTD 219

Query: 138 ALLQSQASSIRNLEVQLGQLASDFSGRQQGSLPSNTEMPNQAGGSGKEKCHAVTLRSGRN 197
           A++QSQA+S+RN E QLGQLA++   R QGS P +TE+P +    GKE+C AVTLRSG  
Sbjct: 220 AVIQSQAASMRNFETQLGQLANELKNRPQGSFPXHTELPKR---EGKEQCKAVTLRSGLA 279

Query: 198 LTIRD-PDAERSYPNSNSTAEI 212
                 P A+   P++  T +I
Sbjct: 280 YDEPTMPTADVQIPSTGPTVKI 298

BLAST of PI0015038 vs. ExPASy TrEMBL
Match: A0A6J1BDW4 (uncharacterized protein LOC110426584 OS=Herrania umbratica OX=108875 GN=LOC110426584 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.8e-26
Identity = 79/174 (45.40%), Postives = 102/174 (58.62%), Query Frame = 0

Query: 24  CVGCGGHHNTDACPLNTETVAFV------RNDPFSNTYNPGWRNHPNFGWGGSGQQQGRH 83
           C  CG  H+ D CP N+E+V FV      +N+P+SNTYNPGWRNHPNF W  +       
Sbjct: 56  CEMCGDSHSYDQCPYNSESVQFVGNFNRQQNNPYSNTYNPGWRNHPNFSWSNNA------ 115

Query: 84  GGQGDHRGEAPGFHARYQNNRPQQSHHQQHPTTTASSTSPMENLLREYMQKNDALLQSQA 143
           G         PGFH   Q  RPQ S  +          S +E LL +Y+ K DA++QSQ 
Sbjct: 116 GPSNPKPIMPPGFH---QQARPQISEKK----------SQLEELLLQYISKTDAIIQSQG 175

Query: 144 SSIRNLEVQLGQLASDFSGRQQGSLPSNTEMPNQAGGSGKEKCHAVTLRSGRNL 192
           +S+RNLE Q+GQLA+  + R QGSLPS+T    Q    GKE+C A+TLRSG+ +
Sbjct: 176 ASLRNLETQVGQLANSINNRPQGSLPSDT----QINPKGKEQCQAITLRSGKEI 206

BLAST of PI0015038 vs. ExPASy TrEMBL
Match: A0A6J0ZX64 (LOW QUALITY PROTEIN: uncharacterized protein LOC110412945 OS=Herrania umbratica OX=108875 GN=LOC110412945 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.0e-25
Identity = 77/174 (44.25%), Postives = 99/174 (56.90%), Query Frame = 0

Query: 24  CVGCGGHHNTDACPLNTETVAFV------RNDPFSNTYNPGWRNHPNFGWGGSGQQQGRH 83
           C  CG  H+ D CP N+E+V FV      +N+P+SNTYNPGWRNHPNF W  +       
Sbjct: 313 CEMCGDSHSYDQCPYNSESVQFVGNFNRQQNNPYSNTYNPGWRNHPNFSWSNNA------ 372

Query: 84  GGQGDHRGEAPGFHARYQNNRPQQSHHQQHPTTTASSTSPMENLLREYMQKNDALLQSQA 143
           G         PGF    Q  RPQ               S +E LL +Y+ K DA++QSQ 
Sbjct: 373 GPSNPKPIMPPGFQ---QQARPQ----------IPEKKSQLEELLLQYISKTDAIIQSQG 432

Query: 144 SSIRNLEVQLGQLASDFSGRQQGSLPSNTEMPNQAGGSGKEKCHAVTLRSGRNL 192
           +S+RNLE Q+GQLA+  + R QGSLPS+T    Q    GKE+C A+TLRSG+ +
Sbjct: 433 ASLRNLETQVGQLANSINNRPQGSLPSDT----QINPKGKEQCQAITLRSGKEI 463

BLAST of PI0015038 vs. ExPASy TrEMBL
Match: A0A6J1AB81 (uncharacterized protein LOC110416390 OS=Herrania umbratica OX=108875 GN=LOC110416390 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.4e-25
Identity = 76/171 (44.44%), Postives = 98/171 (57.31%), Query Frame = 0

Query: 27  CGGHHNTDACPLNTETVAFV------RNDPFSNTYNPGWRNHPNFGWGGSGQQQGRHGGQ 86
           CG  H+ D CP N+E+V FV      +N+P+SNTYNPGWRNHPNF W  +       G  
Sbjct: 2   CGDSHSYDQCPYNSESVQFVGNFNRQQNNPYSNTYNPGWRNHPNFSWSNNA------GPS 61

Query: 87  GDHRGEAPGFHARYQNNRPQQSHHQQHPTTTASSTSPMENLLREYMQKNDALLQSQASSI 146
                  PGF    Q  RPQ               S +E LL +Y+ K DA++QSQ +S+
Sbjct: 62  NPKPIMPPGFQ---QQARPQ----------IPEKKSQLEELLLQYISKTDAIIQSQGASL 121

Query: 147 RNLEVQLGQLASDFSGRQQGSLPSNTEMPNQAGGSGKEKCHAVTLRSGRNL 192
           RNLE Q+GQLA+  + R QGSLPS+T    Q    GKE+C A+TLRSG+ +
Sbjct: 122 RNLETQVGQLANSINNRPQGSLPSDT----QINPKGKEQCQAITLRSGKEI 149

BLAST of PI0015038 vs. NCBI nr
Match: XP_030498047.1 (uncharacterized protein LOC115713707 [Cannabis sativa])

HSP 1 Score: 153.7 bits (387), Expect = 1.8e-33
Identity = 96/198 (48.48%), Postives = 123/198 (62.12%), Query Frame = 0

Query: 3   ILQVNTAGSSV--LAANQIDDMGCVGCGGHHNTDACPLNTETVAFV-------RNDPFSN 62
           IL+    G SV   AA Q  ++ CV CG  H  + CP N  +V +V        N+P+SN
Sbjct: 114 ILKNMNMGGSVQPAAAIQRAEISCVYCGDGHTFENCPSNPASVCYVGNQNFNRNNNPYSN 173

Query: 63  TYNPGWRNHPNFGWGGSGQQQGRHGGQGDHRGEAPGFHARYQNNRPQQSHHQQHPTTTAS 122
           +YNP W++HPNF WGG G       GQG  +   PGF    Q  RPQQSH  Q      S
Sbjct: 174 SYNPAWKHHPNFSWGGQGASSSGAQGQG-KQSFPPGFS---QQPRPQQSHQPQ-----GS 233

Query: 123 STSPMENLLREYMQKNDALLQSQASSIRNLEVQLGQLASDFSGRQQGSLPSNTEMPNQAG 182
            TS +E+L+R+YM KNDA++QSQA+S+RNLEVQLGQLA++   R QG+LPS+TE P +  
Sbjct: 234 QTSSLESLMRDYMAKNDAVIQSQAASLRNLEVQLGQLANNLKNRPQGTLPSDTENPRR-- 293

Query: 183 GSGKEKCHAVTLRSGRNL 192
             GKE C A+TLRSG+ L
Sbjct: 294 -DGKEHCKAITLRSGKIL 299

BLAST of PI0015038 vs. NCBI nr
Match: XP_030509259.1 (uncharacterized protein LOC115723937 [Cannabis sativa])

HSP 1 Score: 150.6 bits (379), Expect = 1.5e-32
Identity = 96/197 (48.73%), Postives = 121/197 (61.42%), Query Frame = 0

Query: 3   ILQVNTAGSSV--LAANQIDDMGCVGCGGHHNTDACPLNTETVAFV-------RNDPFSN 62
           IL+    G SV   AA Q  ++ CV CG  H  + CP N  +V +V        N+P+SN
Sbjct: 274 ILKNMNMGGSVQPAAAIQRAEISCVYCGDGHTFENCPSNPASVCYVGNQNFNRNNNPYSN 333

Query: 63  TYNPGWRNHPNFGWGGSG-QQQGRHGGQGDHRGEAPGFHARYQNNRPQQSHHQQHPTTTA 122
           +YNP W++HPNF WGG G    G    QG  +   PGF    Q  RPQQ H  Q      
Sbjct: 334 SYNPAWKHHPNFSWGGQGASSSGAQQAQG-KQSFPPGFS---QQPRPQQPHQPQ-----G 393

Query: 123 SSTSPMENLLREYMQKNDALLQSQASSIRNLEVQLGQLASDFSGRQQGSLPSNTEMPNQA 182
           S TS +E+L+R+YM KNDA++QSQA+S+RNLEVQLGQLA+D   R QG+LPS+TE P + 
Sbjct: 394 SQTSSLESLMRDYMAKNDAVIQSQAASLRNLEVQLGQLANDLKNRPQGTLPSDTENPRR- 453

Query: 183 GGSGKEKCHAVTLRSGR 190
              GKE C AVTLRSG+
Sbjct: 454 --DGKEHCKAVTLRSGK 458

BLAST of PI0015038 vs. NCBI nr
Match: XP_038902511.1 (uncharacterized protein LOC120089170 [Benincasa hispida])

HSP 1 Score: 148.3 bits (373), Expect = 7.7e-32
Identity = 77/167 (46.11%), Postives = 115/167 (68.86%), Query Frame = 0

Query: 18  QIDDMGCVGCGGHHNTDACPLNTETVAFVRNDPFSNTYNPGWRNHPNFGWGGSGQQQGRH 77
           Q+  + C  CG  H+ + CP N + V  ++N+P++NTYNPGWRNHPNF WGG+  Q G+ 
Sbjct: 231 QVAVISCAQCGEGHSVEMCPSNPQAVYSIQNNPYNNTYNPGWRNHPNFNWGGNNDQGGQR 290

Query: 78  GGQ--GDHRGEAPGFH--ARYQNNRPQQSHHQQHPTTTASSTSPMENLLREYMQKNDALL 137
             Q   ++RG  P FH      +++ +QSH+Q   +  ++++S +E LL++Y++KNDA++
Sbjct: 291 NLQNNSENRGNPPVFHQGLNQSHHQSRQSHNQPSSSNFSTNSSSLEALLKQYIEKNDAVM 350

Query: 138 QSQASSIRNLEVQLGQLASDFSGRQQGSLPSNTEMPNQAGGSGKEKC 181
           QSQASSIRNLEVQ+GQLA++   R  G +PSN+E P   G +GKE+C
Sbjct: 351 QSQASSIRNLEVQMGQLAAELRNRALGMMPSNSEAP---GSNGKEQC 394

BLAST of PI0015038 vs. NCBI nr
Match: XP_030497803.1 (uncharacterized protein LOC115713460 [Cannabis sativa])

HSP 1 Score: 148.3 bits (373), Expect = 7.7e-32
Identity = 93/196 (47.45%), Postives = 116/196 (59.18%), Query Frame = 0

Query: 3   ILQVNTAGSSV--LAANQIDDMGCVGCGGHHNTDACPLNTETVAFV-------RNDPFSN 62
           IL+    G SV   AA Q     CV CG  H  + CP N  +V +V        N+P+SN
Sbjct: 266 ILKNMNMGGSVQPAAAIQRAKNSCVYCGDGHTFENCPSNLASVCYVGNQNFNRNNNPYSN 325

Query: 63  TYNPGWRNHPNFGWGGSGQQQGRHGGQGDHRGEAPGFHARYQNNRPQQSHHQQHPTTTAS 122
           +YNP W++HPNF WGG G+Q              PGF    Q  RPQQ H  Q      S
Sbjct: 326 SYNPAWKHHPNFSWGGQGKQ-----------SFPPGFS---QQPRPQQPHQPQ-----GS 385

Query: 123 STSPMENLLREYMQKNDALLQSQASSIRNLEVQLGQLASDFSGRQQGSLPSNTEMPNQAG 182
            TS +E+L+R+YM KND ++QSQA+S+RNLEVQLGQLA+D   R QG+LPS+TE P +  
Sbjct: 386 QTSSLESLMRDYMAKNDTVIQSQAASLRNLEVQLGQLANDLKNRPQGTLPSDTENPRR-- 439

Query: 183 GSGKEKCHAVTLRSGR 190
             GKE C AVTLRSG+
Sbjct: 446 -DGKEHCKAVTLRSGK 439

BLAST of PI0015038 vs. NCBI nr
Match: XP_030507648.1 (uncharacterized protein LOC115722545 [Cannabis sativa])

HSP 1 Score: 146.4 bits (368), Expect = 2.9e-31
Identity = 91/199 (45.73%), Postives = 122/199 (61.31%), Query Frame = 0

Query: 3   ILQVNTAGSSV--LAANQIDDMGCVGCGGHHNTDACPLNTETVAFV-------RNDPFSN 62
           IL+    G SV   AA Q  ++ CV CG  H  + CP N  +V +V        N+P+SN
Sbjct: 208 ILKNMNMGGSVQPAAAIQRAEISCVYCGDGHTFENCPSNLASVCYVGNQNFNRNNNPYSN 267

Query: 63  TYNPGWRNHPNFGWGGSG-QQQGRHGGQGDHRGEAPGFHARYQNNRPQQSHHQQHPTTTA 122
           +YNP W++HPNF WGG G    G    QG  +   PGF  + ++++PQ            
Sbjct: 268 SYNPAWKHHPNFSWGGQGASSSGAQQAQG-KQSFPPGFSQQPRSHQPQ-----------G 327

Query: 123 SSTSPMENLLREYMQKNDALLQSQASSIRNLEVQLGQLASDFSGRQQGSLPSNTEMPNQA 182
           S TS +E+L+R+YM KNDA++QSQA+S+RNLEVQLGQLA+D   R QG+LPS+TE P + 
Sbjct: 328 SQTSSLESLMRDYMAKNDAVIQSQAASLRNLEVQLGQLANDLKNRPQGTLPSDTENPRR- 387

Query: 183 GGSGKEKCHAVTLRSGRNL 192
              GKE C A+TLRSG+ L
Sbjct: 388 --DGKEHCKAITLRSGKIL 391

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3D2S05.0e-2948.07Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1DYG02.1e-2741.58uncharacterized protein LOC111025764 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1BDW41.8e-2645.40uncharacterized protein LOC110426584 OS=Herrania umbratica OX=108875 GN=LOC11042... [more]
A0A6J0ZX642.0e-2544.25LOW QUALITY PROTEIN: uncharacterized protein LOC110412945 OS=Herrania umbratica ... [more]
A0A6J1AB814.4e-2544.44uncharacterized protein LOC110416390 OS=Herrania umbratica OX=108875 GN=LOC11041... [more]
Match NameE-valueIdentityDescription
XP_030498047.11.8e-3348.48uncharacterized protein LOC115713707 [Cannabis sativa][more]
XP_030509259.11.5e-3248.73uncharacterized protein LOC115723937 [Cannabis sativa][more]
XP_038902511.17.7e-3246.11uncharacterized protein LOC120089170 [Benincasa hispida][more]
XP_030497803.17.7e-3247.45uncharacterized protein LOC115713460 [Cannabis sativa][more]
XP_030507648.12.9e-3145.73uncharacterized protein LOC115722545 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 155..215
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 155..172
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..116
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 199..215
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..116

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0015038.1PI0015038.1mRNA