PI0014987 (gene) Melon (PI 482460) v1

Overview
NamePI0014987
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr08: 10749579 .. 10750315 (+)
RNA-Seq ExpressionPI0014987
SyntenyPI0014987
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCTTCGATTCAGCAATTTGATCGAGACGTGTCAAGAATACATCCATTGGTATAATAATATTACAAGACTCTACATCACTCGATCGGGAGTAGTTGTGGGTCATCTGGTACATATTTAAATATTGAATAATTACTTTAAATTCTTTACTCAATTAAATATTTTCTGATTTTTTTAAAAATTCACAGAGATCGAACAATATAAGATTTCGTGATGTTGCAGATGATCTACAACATGTCTTTGATATATGTAATAATAACGAGAGGTACATAGAGGAGATACATTATATGTACGATGTACCTATTGTACCTCCACCAGTTCATAGGGAACATGTTCGAACGGAAAAAACTGAACTCGAAGAAGTTTACCATAATGTAGAAAAAGTGCCTCTAGTGACATAGACACAAAGTCAAATTGGTTATGGTAGTCCGATGATGATGCCAGCATTTAGAGCAAGATATTGTGATTCTGAGGTCGATACAGGATATTATGACTCAAGGGTCGGTCCATCGTCTTCTTACATGCATGTACACGGGCGCGGCTGCGGAGAACATAACGAATATTTGTACTATGAAACACCTGCAAATGTATCAGATCCACAAGAGTACCAACAAGAACTAGAGAATCAAGAGGAGCCAGGACAGCTTAGATTCAGAGTCGACGACGACAACCAGCTCGAAATCGACGACATCCGGGGTGTGGAACTCGTTGATTTTCTTTTATCTTTTAAATAA

mRNA sequence

ATGGGAGCTTCGATTCAGCAATTTGATCGAGACGTGTCAAGAATACATCCATTGAGATCGAACAATATAAGATTTCGTGATGTTGCAGATGATCTACAACATGTCTTTGATATATGTAATAATAACGAGAGGTACATAGAGGAGATACATTATATGTACGATGTACCTATTGTACCTCCACCAGTTCATAGGGAACATGTTCGAACGGAAAAAACTGAACTCGAAGAAGTTTACCATAATACACAAAGTCAAATTGGTTATGGTAGTCCGATGATGATGCCAGCATTTAGAGCAAGATATTGTGATTCTGAGGTCGATACAGGATATTATGACTCAAGGGTCGGTCCATCGTCTTCTTACATGCATGTACACGGGCGCGGCTGCGGAGAACATAACGAATATTTGTACTATGAAACACCTGCAAATGTATCAGATCCACAAGAGTACCAACAAGAACTAGAGAATCAAGAGGAGCCAGGACAGCTTAGATTCAGAGTCGACGACGACAACCAGCTCGAAATCGACGACATCCGGGGTGTGGAACTCGTTGATTTTCTTTTATCTTTTAAATAA

Coding sequence (CDS)

ATGGGAGCTTCGATTCAGCAATTTGATCGAGACGTGTCAAGAATACATCCATTGAGATCGAACAATATAAGATTTCGTGATGTTGCAGATGATCTACAACATGTCTTTGATATATGTAATAATAACGAGAGGTACATAGAGGAGATACATTATATGTACGATGTACCTATTGTACCTCCACCAGTTCATAGGGAACATGTTCGAACGGAAAAAACTGAACTCGAAGAAGTTTACCATAATACACAAAGTCAAATTGGTTATGGTAGTCCGATGATGATGCCAGCATTTAGAGCAAGATATTGTGATTCTGAGGTCGATACAGGATATTATGACTCAAGGGTCGGTCCATCGTCTTCTTACATGCATGTACACGGGCGCGGCTGCGGAGAACATAACGAATATTTGTACTATGAAACACCTGCAAATGTATCAGATCCACAAGAGTACCAACAAGAACTAGAGAATCAAGAGGAGCCAGGACAGCTTAGATTCAGAGTCGACGACGACAACCAGCTCGAAATCGACGACATCCGGGGTGTGGAACTCGTTGATTTTCTTTTATCTTTTAAATAA

Protein sequence

MGASIQQFDRDVSRIHPLRSNNIRFRDVADDLQHVFDICNNNERYIEEIHYMYDVPIVPPPVHREHVRTEKTELEEVYHNTQSQIGYGSPMMMPAFRARYCDSEVDTGYYDSRVGPSSSYMHVHGRGCGEHNEYLYYETPANVSDPQEYQQELENQEEPGQLRFRVDDDNQLEIDDIRGVELVDFLLSFK
Homology
BLAST of PI0014987 vs. ExPASy TrEMBL
Match: A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 2.7e-50
Identity = 119/197 (60.41%), Postives = 131/197 (66.50%), Query Frame = 0

Query: 4   SIQQFDRDVSR--IHPL----------------RSNNIRFRDVADDLQHVFDICNNNERY 63
           SIQQFD+DV++  IH                  RSNN R RDVADDLQ   DICNNNERY
Sbjct: 6   SIQQFDKDVTQEYIHWYSNITRLYITRPGAAVGRSNNARLRDVADDLQQFLDICNNNERY 65

Query: 64  IEEIHYMYDVPIVPPPVHREHVRTEKTELEEVYHN---------TQSQIGYGSPM-MMPA 123
           +EEIH MYD+PIVPPPVHR  VR E+ EL++VYHN         TQSQ GYGSPM MMP 
Sbjct: 66  MEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPT 125

Query: 124 FRARYCDSEVDTGYYDSRVGPSS---------SYMHVHGRGCGEHNEYLYYETPANVSDP 164
           F A YCD EV  GYYD+ VGPSS         SYMH H RG GEHNEYLY+E PA+VSD 
Sbjct: 126 FEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSRGYGEHNEYLYHEAPADVSDR 185

BLAST of PI0014987 vs. ExPASy TrEMBL
Match: A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.1e-48
Identity = 109/164 (66.46%), Postives = 118/164 (71.95%), Query Frame = 0

Query: 19  RSNNIRFRDVADDLQHVFDICNNNERYIEEIHYMYDVPIVPPPVHREHVRTEKTELEEVY 78
           RSNN R RDVADDLQ   DICNNNERY+EEIH MYD+PIVPPPVHR  VR E+ EL++VY
Sbjct: 27  RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 86

Query: 79  HN---------TQSQIGYGSPM-MMPAFRARYCDSEVDTGYYDSRVGPSS---------S 138
           HN         TQSQ GYGSPM MMP F A YCD EV  GYYD+ VGPSS         S
Sbjct: 87  HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 146

Query: 139 YMHVHGRGCGEHNEYLYYETPANVSDPQEYQQELENQEEPGQLR 164
           YMH H RG GEHNEYLY+E PA+VSD QEYQQE ENQE+  Q R
Sbjct: 147 YMHGHRRGYGEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHR 190

BLAST of PI0014987 vs. ExPASy TrEMBL
Match: A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.1e-48
Identity = 113/199 (56.78%), Postives = 130/199 (65.33%), Query Frame = 0

Query: 4   SIQQFDRDVSR--------------------IHPLRSNNIRFRDVADDLQHVFDICNNNE 63
           SIQQFD DV++                    +  LRSNN R RDV +D Q V DICNNNE
Sbjct: 282 SIQQFDMDVTQEYIHLYNNITRLYITRPGAIVGHLRSNNARLRDVVNDPQQVLDICNNNE 341

Query: 64  RYIEEIHYMYDVPIVPPPVHREHVRTEKTELEEVYHN---------TQSQIGYGSPM-MM 123
           RY+E+IH +YD+PIVPPPVHRE  R E+ EL+EVYHN         TQSQ GYGSPM MM
Sbjct: 342 RYMEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMM 401

Query: 124 PAFRARYCDSEVDTGYYDS---------RVGPSSSYMHVHGRGCGEHNEYLYYETPANVS 164
           P F A YCDSEV  GYYD+          VGPS+SYM+ HGRG GEHNEYLY+E P +VS
Sbjct: 402 PTFGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAPTDVS 461

BLAST of PI0014987 vs. ExPASy TrEMBL
Match: A0A5A7SLF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002870 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 9.8e-45
Identity = 110/197 (55.84%), Postives = 124/197 (62.94%), Query Frame = 0

Query: 1   MGASIQQFDRDVSR--IH-------------PLRSNNIRFRDVADDLQHVFDICNNNERY 60
           +G  IQQFD DV++  IH               RSNN R RDVADD Q V DICNNN+R+
Sbjct: 3   IGVLIQQFDIDVTQEYIHSYNITRLYITQLGATRSNNARLRDVADDSQQVLDICNNNKRH 62

Query: 61  IEEIHYMYDVPIVPPPVHREHVRTEKTELEEVYHNT---------QSQIGYGSPM-MMPA 120
           +EEIH MY +PIVPP +HR  V+ E+ EL+EVYHN          Q+Q GYGSPM MMP 
Sbjct: 63  MEEIHNMYHLPIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPT 122

Query: 121 FRARYCDSEVDTGYYDSRVGPSS---------SYMHVHGRGCGEHNEYLYYETPANVSDP 164
           F   YCD EV+T YYDS VGPSS         SYMH H    GEHNEYLY+E P  VSD 
Sbjct: 123 FGVGYCDFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGHRHDYGEHNEYLYHEAPTEVSDR 182

BLAST of PI0014987 vs. ExPASy TrEMBL
Match: A0A5A7SMM2 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002820 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 9.2e-43
Identity = 105/193 (54.40%), Postives = 120/193 (62.18%), Query Frame = 0

Query: 1   MGASIQQFDRDVSR--------------------IHPLRSNNIRFRDVADDLQHVFDICN 60
           +G SIQQFD DV++                    +  LRSNN R RDV DD Q V DICN
Sbjct: 3   IGVSIQQFDMDVTQEYIHWYNNVMRLYITRSGVAVGHLRSNNARLRDVTDDSQQVLDICN 62

Query: 61  NNERYIEEIHYMYDVPIVPPPVHREHVRTEKTELEEVYHNTQSQIGYGSPM-MMPAFRAR 120
           NNERY++EI+ MYD+PIVPPPVHR                 +SQ GYGSPM MMP   A 
Sbjct: 63  NNERYMDEIYNMYDLPIVPPPVHR----------------GRSQTGYGSPMTMMPTIGAG 122

Query: 121 YCDSEVDTGYYDS---------RVGPSSSYMHVHGRGCGEHNEYLYYETPANVSDPQEYQ 164
           YCDSEVDTGYYD+          VGPS+SYMH HGRG GEHN+YLY+E PA VSD QEY+
Sbjct: 123 YCDSEVDTGYYDTGVSPSSSYMDVGPSTSYMHRHGRGYGEHNKYLYHEAPAYVSDRQEYR 179

BLAST of PI0014987 vs. NCBI nr
Match: KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 208.4 bits (529), Expect = 5.5e-50
Identity = 119/197 (60.41%), Postives = 131/197 (66.50%), Query Frame = 0

Query: 4   SIQQFDRDVSR--IHPL----------------RSNNIRFRDVADDLQHVFDICNNNERY 63
           SIQQFD+DV++  IH                  RSNN R RDVADDLQ   DICNNNERY
Sbjct: 6   SIQQFDKDVTQEYIHWYSNITRLYITRPGAAVGRSNNARLRDVADDLQQFLDICNNNERY 65

Query: 64  IEEIHYMYDVPIVPPPVHREHVRTEKTELEEVYHN---------TQSQIGYGSPM-MMPA 123
           +EEIH MYD+PIVPPPVHR  VR E+ EL++VYHN         TQSQ GYGSPM MMP 
Sbjct: 66  MEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPT 125

Query: 124 FRARYCDSEVDTGYYDSRVGPSS---------SYMHVHGRGCGEHNEYLYYETPANVSDP 164
           F A YCD EV  GYYD+ VGPSS         SYMH H RG GEHNEYLY+E PA+VSD 
Sbjct: 126 FEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSRGYGEHNEYLYHEAPADVSDR 185

BLAST of PI0014987 vs. NCBI nr
Match: TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 203.0 bits (515), Expect = 2.3e-48
Identity = 113/199 (56.78%), Postives = 130/199 (65.33%), Query Frame = 0

Query: 4   SIQQFDRDVSR--------------------IHPLRSNNIRFRDVADDLQHVFDICNNNE 63
           SIQQFD DV++                    +  LRSNN R RDV +D Q V DICNNNE
Sbjct: 282 SIQQFDMDVTQEYIHLYNNITRLYITRPGAIVGHLRSNNARLRDVVNDPQQVLDICNNNE 341

Query: 64  RYIEEIHYMYDVPIVPPPVHREHVRTEKTELEEVYHN---------TQSQIGYGSPM-MM 123
           RY+E+IH +YD+PIVPPPVHRE  R E+ EL+EVYHN         TQSQ GYGSPM MM
Sbjct: 342 RYMEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMM 401

Query: 124 PAFRARYCDSEVDTGYYDS---------RVGPSSSYMHVHGRGCGEHNEYLYYETPANVS 164
           P F A YCDSEV  GYYD+          VGPS+SYM+ HGRG GEHNEYLY+E P +VS
Sbjct: 402 PTFGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAPTDVS 461

BLAST of PI0014987 vs. NCBI nr
Match: TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 203.0 bits (515), Expect = 2.3e-48
Identity = 109/164 (66.46%), Postives = 118/164 (71.95%), Query Frame = 0

Query: 19  RSNNIRFRDVADDLQHVFDICNNNERYIEEIHYMYDVPIVPPPVHREHVRTEKTELEEVY 78
           RSNN R RDVADDLQ   DICNNNERY+EEIH MYD+PIVPPPVHR  VR E+ EL++VY
Sbjct: 27  RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 86

Query: 79  HN---------TQSQIGYGSPM-MMPAFRARYCDSEVDTGYYDSRVGPSS---------S 138
           HN         TQSQ GYGSPM MMP F A YCD EV  GYYD+ VGPSS         S
Sbjct: 87  HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 146

Query: 139 YMHVHGRGCGEHNEYLYYETPANVSDPQEYQQELENQEEPGQLR 164
           YMH H RG GEHNEYLY+E PA+VSD QEYQQE ENQE+  Q R
Sbjct: 147 YMHGHRRGYGEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHR 190

BLAST of PI0014987 vs. NCBI nr
Match: KAA0025972.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 189.9 bits (481), Expect = 2.0e-44
Identity = 110/197 (55.84%), Postives = 124/197 (62.94%), Query Frame = 0

Query: 1   MGASIQQFDRDVSR--IH-------------PLRSNNIRFRDVADDLQHVFDICNNNERY 60
           +G  IQQFD DV++  IH               RSNN R RDVADD Q V DICNNN+R+
Sbjct: 3   IGVLIQQFDIDVTQEYIHSYNITRLYITQLGATRSNNARLRDVADDSQQVLDICNNNKRH 62

Query: 61  IEEIHYMYDVPIVPPPVHREHVRTEKTELEEVYHNT---------QSQIGYGSPM-MMPA 120
           +EEIH MY +PIVPP +HR  V+ E+ EL+EVYHN          Q+Q GYGSPM MMP 
Sbjct: 63  MEEIHNMYHLPIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPT 122

Query: 121 FRARYCDSEVDTGYYDSRVGPSS---------SYMHVHGRGCGEHNEYLYYETPANVSDP 164
           F   YCD EV+T YYDS VGPSS         SYMH H    GEHNEYLY+E P  VSD 
Sbjct: 123 FGVGYCDFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGHRHDYGEHNEYLYHEAPTEVSDR 182

BLAST of PI0014987 vs. NCBI nr
Match: KAA0025967.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 183.3 bits (464), Expect = 1.9e-42
Identity = 105/193 (54.40%), Postives = 120/193 (62.18%), Query Frame = 0

Query: 1   MGASIQQFDRDVSR--------------------IHPLRSNNIRFRDVADDLQHVFDICN 60
           +G SIQQFD DV++                    +  LRSNN R RDV DD Q V DICN
Sbjct: 3   IGVSIQQFDMDVTQEYIHWYNNVMRLYITRSGVAVGHLRSNNARLRDVTDDSQQVLDICN 62

Query: 61  NNERYIEEIHYMYDVPIVPPPVHREHVRTEKTELEEVYHNTQSQIGYGSPM-MMPAFRAR 120
           NNERY++EI+ MYD+PIVPPPVHR                 +SQ GYGSPM MMP   A 
Sbjct: 63  NNERYMDEIYNMYDLPIVPPPVHR----------------GRSQTGYGSPMTMMPTIGAG 122

Query: 121 YCDSEVDTGYYDS---------RVGPSSSYMHVHGRGCGEHNEYLYYETPANVSDPQEYQ 164
           YCDSEVDTGYYD+          VGPS+SYMH HGRG GEHN+YLY+E PA VSD QEY+
Sbjct: 123 YCDSEVDTGYYDTGVSPSSSYMDVGPSTSYMHRHGRGYGEHNKYLYHEAPAYVSDRQEYR 179

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V3422.7e-5060.41Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3BSG81.1e-4866.46GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5D3DJV71.1e-4856.78Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7SLF89.8e-4555.84Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7SMM29.2e-4354.40Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
Match NameE-valueIdentityDescription
KAA0062642.15.5e-5060.41mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
TYK23842.12.3e-4856.78serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
TYK01176.12.3e-4866.46GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0025972.12.0e-4455.84mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0025967.11.9e-4254.40mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0014987.1PI0014987.1mRNA