Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAATCCTTCGAGGAAAGTCCTACTATCCTGTCGAAGTTCAAACTCGCATGATACTCACATGTTTTTACTGCATAATCTCATAAATCGGGAGATGACGAACACTGACATACCGGACGACGTTGATGAGGGTGAATCTACGCACGCCACCACTGGCGGTGAAGAAATTCATTACATAGAGACGTCGAGTGCATGGAGTCAATGGAGGGACGAGCTTGCCGAAAGAATGTTCAGTGATTGGGAGTTGCGTAATAAGTAACGCCCAATTAATTCTACTACTAGCCGTGTATTATGTATTATGTATTGTGTATTGCATCTTCTGTGTAGTTCAGTACGATGACAATTTAATGTACGTGTTAACATTCCGATTGTTGATGTAAATTAATAATTCGCACCTGATTTAGTTTGTTACATTAATTTATTCTTATTTTTTTTCTAGTATGGCAACTTCTTCAAAGACCCCGAAGCACCACTGGACGAAAGAGGAGGATGCCGTCCTCGTTGAATGTCTGGTGGAGTTGGTATCTTCCGGCAAGTGGAGGTTAGATAACGGGATGTTTAGACCCGGATACCATAGTCATCTACAGAAAATGATTGCCGAGAGGATGTCGGGACATAACATAACAGCTACAACAATAGATTGTCGAATCAAGACAATGAAAAGAGCATTCCAAACAATATCTGAAATGAAGGGCCCATCGTGTAGTGGGTTCGGTTGGAATGATGAGCTGAAATGCATCATTGCCAAGAAAGACTTGTATGACAGTTGGGTGAAGGTATGTTTTTGATTCTGTCCATTACTGTTTCTTTGTGATTGTAAATTGTCTAATTAGTTACTACAACAACACTTGTACAGAGTCATCCAGCCGCAAAAGGCCTCCTAAACCCTTTCCCCACTACGACGACTTTTGCTACGTCTTCGGAAGAGATGGTGCAACAGGAGGTCGAGCTGAAACCTTTGATGATGTTGGGTCGAATGTGCCTTCAGGCTTCGGAGGATTTCTCCACTATGACGGGAACGATATGGAGATCCTGACGATATACAGTCAGGGCCTGGACATGTCACCTGACGACATAATGGGTACACGATCGGTTCGTATGTCTGAGGCTAGGGCTGGTTCGAGCGAGTCGAAGAGGAAACAGGGAGGGTAGACATTGGAGGCGGCATAAATTATTCGCAGTGCCATGGAATATGCTAATGACCAGCTGAATGCTATTGCAGAATGGCCCAAAGAACAACGGCAATATGCAAGCATGACACGTGCGGAAGTCGTTAGACAAATACAGGGAATCCCGGAGTTGAGTCGACTGGACAGGGTTCATTGTATGCGCATAATGATGCGCAGCGTGGATGACATGAAAGCATTTATAGACATCCCGAACGAGCTTAAGTTGGATTACTGCACGGTCATCCTCCAAGATGACGCTTGA
mRNA sequence
ATGGACAATCCTTCGAGGAAAGTCCTACTATCCTGTCGAAGTTCAAACTCGCATGATACTCACATGTTTTTACTGCATAATCTCATAAATCGGGAGATGACGAACACTGACATACCGGACGACGTTGATGAGGGTGAATCTACGCACGCCACCACTGGCGGTGAAGAAATTCATTACATAGAGACGTCGAGTGCATGGAGTCAATGGAGGGACGAGCTTGCCGAAAGAATGTTCAGTGATTGGGAGTTGCGTAATAATATGGCAACTTCTTCAAAGACCCCGAAGCACCACTGGACGAAAGAGGAGGATGCCGTCCTCGTTGAATGTCTGGTGGAGTTGGTATCTTCCGGCAAGTGGAGGTTAGATAACGGGATGTTTAGACCCGGATACCATAGTCATCTACAGAAAATGATTGCCGAGAGGATGTCGGGACATAACATAACAGCTACAACAATAGATTGTCGAATCAAGACAATGAAAAGAGCATTCCAAACAATATCTGAAATGAAGGGCCCATCGTGTAGTGGGTTCGGTTGGAATGATGAGCTGAAATGCATCATTGCCAAGAAAGACTTTTACTACAACAACACTTGTACAGAGTCATCCAGCCGCAAAAGGCCTCCTAAACCCTTTCCCCACTACGACGACTTTTGCTACGTCTTCGGAAGAGATGGTGCAACAGGAGGTCGAGCTGAAACCTTTGATGATGTTGGGTCGAATGTGCCTTCAGGCTTCGGAGGATTTCTCCACTATGACGGGAACGATATGGAGATCCTGACGATATACAGTCAGGGCCTGGACATGTCACCTGACGACATAATGGGTACACGATCGGTTCGTATGTCTGAGGCTAGGGCTGGTTCGAGCGAGTCGAAGAGGAAACAGGGAGGTGCCATGGAATATGCTAATGACCAGCTGAATGCTATTGCAGAATGGCCCAAAGAACAACGGCAATATGCAAGCATGACACGTGCGGAAGTCGTTAGACAAATACAGGGAATCCCGGAGTTGAGTCGACTGGACAGGGTTCATTGTATGCGCATAATGATGCGCAGCGTGGATGACATGAAAGCATTTATAGACATCCCGAACGAGCTTAAGTTGGATTACTGCACGGTCATCCTCCAAGATGACGCTTGA
Coding sequence (CDS)
ATGGACAATCCTTCGAGGAAAGTCCTACTATCCTGTCGAAGTTCAAACTCGCATGATACTCACATGTTTTTACTGCATAATCTCATAAATCGGGAGATGACGAACACTGACATACCGGACGACGTTGATGAGGGTGAATCTACGCACGCCACCACTGGCGGTGAAGAAATTCATTACATAGAGACGTCGAGTGCATGGAGTCAATGGAGGGACGAGCTTGCCGAAAGAATGTTCAGTGATTGGGAGTTGCGTAATAATATGGCAACTTCTTCAAAGACCCCGAAGCACCACTGGACGAAAGAGGAGGATGCCGTCCTCGTTGAATGTCTGGTGGAGTTGGTATCTTCCGGCAAGTGGAGGTTAGATAACGGGATGTTTAGACCCGGATACCATAGTCATCTACAGAAAATGATTGCCGAGAGGATGTCGGGACATAACATAACAGCTACAACAATAGATTGTCGAATCAAGACAATGAAAAGAGCATTCCAAACAATATCTGAAATGAAGGGCCCATCGTGTAGTGGGTTCGGTTGGAATGATGAGCTGAAATGCATCATTGCCAAGAAAGACTTTTACTACAACAACACTTGTACAGAGTCATCCAGCCGCAAAAGGCCTCCTAAACCCTTTCCCCACTACGACGACTTTTGCTACGTCTTCGGAAGAGATGGTGCAACAGGAGGTCGAGCTGAAACCTTTGATGATGTTGGGTCGAATGTGCCTTCAGGCTTCGGAGGATTTCTCCACTATGACGGGAACGATATGGAGATCCTGACGATATACAGTCAGGGCCTGGACATGTCACCTGACGACATAATGGGTACACGATCGGTTCGTATGTCTGAGGCTAGGGCTGGTTCGAGCGAGTCGAAGAGGAAACAGGGAGGTGCCATGGAATATGCTAATGACCAGCTGAATGCTATTGCAGAATGGCCCAAAGAACAACGGCAATATGCAAGCATGACACGTGCGGAAGTCGTTAGACAAATACAGGGAATCCCGGAGTTGAGTCGACTGGACAGGGTTCATTGTATGCGCATAATGATGCGCAGCGTGGATGACATGAAAGCATTTATAGACATCCCGAACGAGCTTAAGTTGGATTACTGCACGGTCATCCTCCAAGATGACGCTTGA
Protein sequence
MDNPSRKVLLSCRSSNSHDTHMFLLHNLINREMTNTDIPDDVDEGESTHATTGGEEIHYIETSSAWSQWRDELAERMFSDWELRNNMATSSKTPKHHWTKEEDAVLVECLVELVSSGKWRLDNGMFRPGYHSHLQKMIAERMSGHNITATTIDCRIKTMKRAFQTISEMKGPSCSGFGWNDELKCIIAKKDFYYNNTCTESSSRKRPPKPFPHYDDFCYVFGRDGATGGRAETFDDVGSNVPSGFGGFLHYDGNDMEILTIYSQGLDMSPDDIMGTRSVRMSEARAGSSESKRKQGGAMEYANDQLNAIAEWPKEQRQYASMTRAEVVRQIQGIPELSRLDRVHCMRIMMRSVDDMKAFIDIPNELKLDYCTVILQDDA
Homology
BLAST of PI0014976 vs. ExPASy TrEMBL
Match:
E5GCB5 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)
HSP 1 Score: 391.3 bits (1004), Expect = 4.4e-105
Identity = 199/366 (54.37%), Postives = 262/366 (71.58%), Query Frame = 0
Query: 24 LLHNLINREMTNTDIPDDVDEGESTHATTGGEEIHYIETSSAWSQWRDELAERMFSDWEL 83
LLHNLINREMTN DI D++DE +STHATT ++IHYIETS+ WSQWRD LAE +
Sbjct: 302 LLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEI------ 361
Query: 84 RNNMATSSKTPKHHWTKEEDAVLVECLVELVSSGKWRLDNGMFRPGYHSHLQKMIAERMS 143
M +SS+ PKH WTKEE+A LVECLVELV++G WR DNG FRPGY + L +M+A ++
Sbjct: 362 ---MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIP 421
Query: 144 GHNITATTIDCRIKTMKRAFQTISEMKGPSCSGFGWNDELKCIIAKKDFYYNNTCTESSS 203
G NI A+TID RIK MKR F ++EM+GP+CSGFGWNDE KCI+A+K+ + + + ++
Sbjct: 422 GSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVF--DDWSHPAA 481
Query: 204 RKRPPKPFPHYDDFCYVFGRDGATGGRAETFDDVGSNVPSGFGGFLHYDGNDMEILTIYS 263
+ K F HYD+ YVFG+D ATGGRAE+F D+GSN P G+ D + +YS
Sbjct: 482 KGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYS 541
Query: 264 QGLDMSPDDIMGTRSVRMSEARAGSSESKRKQGG-----------AMEYANDQLNAIAEW 323
GL+MSPDD+M TR+ R+SE R SS SKRK+ G A+EY N+QL+ IAEW
Sbjct: 542 PGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEW 601
Query: 324 PKEQRQYASMTRAEVVRQIQGIPELSRLDRVHCMRIMMRSVDDMKAFIDIPNELKLDYCT 379
P QRQ A+ TR E+VR ++ IPEL+ +DR MRI+MR+VDDMKAF+++P+ +K YC+
Sbjct: 602 PILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCS 656
BLAST of PI0014976 vs. ExPASy TrEMBL
Match:
A0A5A7TDD6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00890 PE=4 SV=1)
HSP 1 Score: 350.9 bits (899), Expect = 6.7e-93
Identity = 181/357 (50.70%), Postives = 240/357 (67.23%), Query Frame = 0
Query: 33 MTNTDIPDDVDEGESTHATTGGEEIHYIETSSAWSQWRDELAERMFSDWELRNNMATSSK 92
MTN DI D++DE +STHATT ++IHYIE S+ W+QWRD+L E MF+DWELRN+M +S +
Sbjct: 1 MTNFDIEDNIDEVDSTHATTATDDIHYIEMSNEWTQWRDDLGEEMFTDWELRNHMTSSLR 60
Query: 93 TPKHHWTKEEDAVLVECLVELVSSGKWRLDNGMFRPGYHSHLQKMIAERMSGHNITATTI 152
PKH WTKEE+A LVECLVELV++G WR DNG FRPGY + L++M+ ++ NI A+
Sbjct: 61 LPKHSWTKEEEAGLVECLVELVNAGGWRFDNGTFRPGYLNQLERMMTFKILDCNIHASPN 120
Query: 153 DCRIKTMKRAFQTISEMKGPSCSGFGWNDELKCIIAKKDFYYNNTCTESSSRKRPPKPFP 212
D RIK MKR F ++EM+GP+CSGFGWNDE KCI+A+K+
Sbjct: 121 DSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEV-------------------- 180
Query: 213 HYDDFCYVFGRDGATGGRAETFDDVGSNVPSGFGGFLHYDGNDMEILTIYSQGLDMSPDD 272
++D+ ++F DVGSN P+G+ FL DM+ +Y+QGL+MS DD
Sbjct: 181 -FNDW-------------IKSFADVGSNDPAGYDAFLADAAPDMDFPPMYNQGLNMSSDD 240
Query: 273 IMGTRSVRMSEARAGSSESKRKQGG-----------AMEYANDQLNAIAEWPKEQRQYAS 332
+MGTR+ + E R SS SKRK+ G +EY N+QLN IAEWP QRQ AS
Sbjct: 241 LMGTRTAWVREHRNVSSGSKRKRAGHSADSGDIIRTLIEYENEQLNHIAEWPALQRQDAS 300
Query: 333 MTRAEVVRQIQGIPELSRLDRVHCMRIMMRSVDDMKAFIDIPNELKLDYCTVILQDD 379
TR EVVRQ++ IPEL+ +DR MRI+MR+VDDMKAF+D+PN +K YC++ILQ++
Sbjct: 301 ETRQEVVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLDVPNNMKYPYCSIILQEN 323
BLAST of PI0014976 vs. ExPASy TrEMBL
Match:
A0A5A7T091 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9475G00160 PE=4 SV=1)
HSP 1 Score: 331.3 bits (848), Expect = 5.5e-87
Identity = 174/359 (48.47%), Postives = 239/359 (66.57%), Query Frame = 0
Query: 33 MTNTDIPDDVDEGESTHA-TTGGEEIHYIETSSAWSQWRDELAERMFSDWELRNNMATSS 92
MT D +D DEG+ST+A TT E+I YIET++ WSQWRD LA MF+DW +M+TS+
Sbjct: 1 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDW----HMSTSN 60
Query: 93 KTPKHHWTKEEDAVLVECLVELVSSGKWRLDNGMFRPGYHSHLQKMIAERMSGHNITATT 152
+ P+H WT+EE+ LVECL+ELVS G W+ DNG FRPGY + L +M+AE++ G + ATT
Sbjct: 61 RAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATT 120
Query: 153 -IDCRIKTMKRAFQTISEMKGPSCSGFGWNDELKCIIAKKDFYYNNTCTESSSRKRPPKP 212
IDCRIKT+KR FQ I+EM+GP+CSGFGWNDE KCI+A+K+ + N + +++ KP
Sbjct: 121 VIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKP 180
Query: 213 FPHYDDFCYVFGRDGATGGRAETFDDVGSNVP-SGFGGFLHYDGNDMEILTIYSQGLDMS 272
FP+YD+ YVF RD ATG AETF DVGSN P G+ F DGN+ + +YSQG+D+S
Sbjct: 181 FPYYDELTYVFCRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE-DFPPVYSQGVDIS 240
Query: 273 PDDIMGTRSVRMSEARAGSSESKRKQGG-----------AMEYANDQLNAIAEWPKEQRQ 332
DD+ +R R SE R GSS SKRK+G A++ N+QL IAEWP
Sbjct: 241 QDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLA 300
Query: 333 YASMTRAEVVRQIQGIPELSRLDRVHCMRIMMRSVDDMKAFIDIPNELKLDYCTVILQD 378
+ R E R ++ +PEL+ LDR R ++ +DD++ F+ +P + + +C V+L+D
Sbjct: 301 NDNHMRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRD 354
BLAST of PI0014976 vs. ExPASy TrEMBL
Match:
A0A5D3DPR5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00580 PE=4 SV=1)
HSP 1 Score: 319.7 bits (818), Expect = 1.6e-83
Identity = 160/303 (52.81%), Postives = 216/303 (71.29%), Query Frame = 0
Query: 87 MATSSKTPKHHWTKEEDAVLVECLVELVSSGKWRLDNGMFRPGYHSHLQKMIAERMSGHN 146
M +SS+ PKH WTKEE+A LVECLVELV++G WR DNG FRPGY + L +M+A ++ G N
Sbjct: 1 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60
Query: 147 ITATTIDCRIKTMKRAFQTISEMKGPSCSGFGWNDELKCIIAKKDFYYNNTCTESSSRKR 206
I A+TID RIK MKR F ++EM+GP+CSGFGWNDE KCI+A+K+ + + + +++
Sbjct: 61 IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVF--DDWSHPAAKGL 120
Query: 207 PPKPFPHYDDFCYVFGRDGATGGRAETFDDVGSNVPSGFGGFLHYDGNDMEILTIYSQGL 266
K F HYD+ YVFG+D ATGGRAE+F D+GSN P G+ D + +YS GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAVAADAMPDTDFPPMYSPGL 180
Query: 267 DMSPDDIMGTRSVRMSEARAGSSESKRKQGG-----------AMEYANDQLNAIAEWPKE 326
+MSPDD+M TR+ R+SE R SS SKRK+ G A+EY N+QL+ IAEWP
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240
Query: 327 QRQYASMTRAEVVRQIQGIPELSRLDRVHCMRIMMRSVDDMKAFIDIPNELKLDYCTVIL 379
QRQ A+ TR E+VR ++ IPEL+ +DR MRI+MR+VDDMKAF+++P+ +K YC++IL
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 300
BLAST of PI0014976 vs. ExPASy TrEMBL
Match:
A0A5A7UME4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold615G00290 PE=4 SV=1)
HSP 1 Score: 318.9 bits (816), Expect = 2.8e-83
Identity = 160/303 (52.81%), Postives = 216/303 (71.29%), Query Frame = 0
Query: 87 MATSSKTPKHHWTKEEDAVLVECLVELVSSGKWRLDNGMFRPGYHSHLQKMIAERMSGHN 146
M +SS+ PKH WTKEE+A LVECLVELV++G WR DNG FRPGY + L +M+A ++ G N
Sbjct: 1 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60
Query: 147 ITATTIDCRIKTMKRAFQTISEMKGPSCSGFGWNDELKCIIAKKDFYYNNTCTESSSRKR 206
I A+TID RIK MKR F ++EM+GP+CSGFGWNDE KCI+A+K+ + + + +++
Sbjct: 61 IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVF--DDWSHPAAKGL 120
Query: 207 PPKPFPHYDDFCYVFGRDGATGGRAETFDDVGSNVPSGFGGFLHYDGNDMEILTIYSQGL 266
K F HYD+ YVFG+D ATGGRAE+F D+GSN P G+ D + +YS GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAEAADAMPDTDFPPMYSPGL 180
Query: 267 DMSPDDIMGTRSVRMSEARAGSSESKRKQGG-----------AMEYANDQLNAIAEWPKE 326
+MSPDD+M TR+ R+SE R SS SKRK+ G A+EY N+QL+ IAEWP
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240
Query: 327 QRQYASMTRAEVVRQIQGIPELSRLDRVHCMRIMMRSVDDMKAFIDIPNELKLDYCTVIL 379
QRQ A+ TR E+VR ++ IPEL+ +DR MRI+MR+VDDMKAF+++P+ +K YC++IL
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 300
BLAST of PI0014976 vs. NCBI nr
Match:
ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])
HSP 1 Score: 391.3 bits (1004), Expect = 9.2e-105
Identity = 199/366 (54.37%), Postives = 262/366 (71.58%), Query Frame = 0
Query: 24 LLHNLINREMTNTDIPDDVDEGESTHATTGGEEIHYIETSSAWSQWRDELAERMFSDWEL 83
LLHNLINREMTN DI D++DE +STHATT ++IHYIETS+ WSQWRD LAE +
Sbjct: 302 LLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEI------ 361
Query: 84 RNNMATSSKTPKHHWTKEEDAVLVECLVELVSSGKWRLDNGMFRPGYHSHLQKMIAERMS 143
M +SS+ PKH WTKEE+A LVECLVELV++G WR DNG FRPGY + L +M+A ++
Sbjct: 362 ---MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIP 421
Query: 144 GHNITATTIDCRIKTMKRAFQTISEMKGPSCSGFGWNDELKCIIAKKDFYYNNTCTESSS 203
G NI A+TID RIK MKR F ++EM+GP+CSGFGWNDE KCI+A+K+ + + + ++
Sbjct: 422 GSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVF--DDWSHPAA 481
Query: 204 RKRPPKPFPHYDDFCYVFGRDGATGGRAETFDDVGSNVPSGFGGFLHYDGNDMEILTIYS 263
+ K F HYD+ YVFG+D ATGGRAE+F D+GSN P G+ D + +YS
Sbjct: 482 KGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYS 541
Query: 264 QGLDMSPDDIMGTRSVRMSEARAGSSESKRKQGG-----------AMEYANDQLNAIAEW 323
GL+MSPDD+M TR+ R+SE R SS SKRK+ G A+EY N+QL+ IAEW
Sbjct: 542 PGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEW 601
Query: 324 PKEQRQYASMTRAEVVRQIQGIPELSRLDRVHCMRIMMRSVDDMKAFIDIPNELKLDYCT 379
P QRQ A+ TR E+VR ++ IPEL+ +DR MRI+MR+VDDMKAF+++P+ +K YC+
Sbjct: 602 PILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCS 656
BLAST of PI0014976 vs. NCBI nr
Match:
KAA0041444.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24318.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 350.9 bits (899), Expect = 1.4e-92
Identity = 181/357 (50.70%), Postives = 240/357 (67.23%), Query Frame = 0
Query: 33 MTNTDIPDDVDEGESTHATTGGEEIHYIETSSAWSQWRDELAERMFSDWELRNNMATSSK 92
MTN DI D++DE +STHATT ++IHYIE S+ W+QWRD+L E MF+DWELRN+M +S +
Sbjct: 1 MTNFDIEDNIDEVDSTHATTATDDIHYIEMSNEWTQWRDDLGEEMFTDWELRNHMTSSLR 60
Query: 93 TPKHHWTKEEDAVLVECLVELVSSGKWRLDNGMFRPGYHSHLQKMIAERMSGHNITATTI 152
PKH WTKEE+A LVECLVELV++G WR DNG FRPGY + L++M+ ++ NI A+
Sbjct: 61 LPKHSWTKEEEAGLVECLVELVNAGGWRFDNGTFRPGYLNQLERMMTFKILDCNIHASPN 120
Query: 153 DCRIKTMKRAFQTISEMKGPSCSGFGWNDELKCIIAKKDFYYNNTCTESSSRKRPPKPFP 212
D RIK MKR F ++EM+GP+CSGFGWNDE KCI+A+K+
Sbjct: 121 DSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEV-------------------- 180
Query: 213 HYDDFCYVFGRDGATGGRAETFDDVGSNVPSGFGGFLHYDGNDMEILTIYSQGLDMSPDD 272
++D+ ++F DVGSN P+G+ FL DM+ +Y+QGL+MS DD
Sbjct: 181 -FNDW-------------IKSFADVGSNDPAGYDAFLADAAPDMDFPPMYNQGLNMSSDD 240
Query: 273 IMGTRSVRMSEARAGSSESKRKQGG-----------AMEYANDQLNAIAEWPKEQRQYAS 332
+MGTR+ + E R SS SKRK+ G +EY N+QLN IAEWP QRQ AS
Sbjct: 241 LMGTRTAWVREHRNVSSGSKRKRAGHSADSGDIIRTLIEYENEQLNHIAEWPALQRQDAS 300
Query: 333 MTRAEVVRQIQGIPELSRLDRVHCMRIMMRSVDDMKAFIDIPNELKLDYCTVILQDD 379
TR EVVRQ++ IPEL+ +DR MRI+MR+VDDMKAF+D+PN +K YC++ILQ++
Sbjct: 301 ETRQEVVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLDVPNNMKYPYCSIILQEN 323
BLAST of PI0014976 vs. NCBI nr
Match:
KAA0036924.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 331.3 bits (848), Expect = 1.1e-86
Identity = 174/359 (48.47%), Postives = 239/359 (66.57%), Query Frame = 0
Query: 33 MTNTDIPDDVDEGESTHA-TTGGEEIHYIETSSAWSQWRDELAERMFSDWELRNNMATSS 92
MT D +D DEG+ST+A TT E+I YIET++ WSQWRD LA MF+DW +M+TS+
Sbjct: 1 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDW----HMSTSN 60
Query: 93 KTPKHHWTKEEDAVLVECLVELVSSGKWRLDNGMFRPGYHSHLQKMIAERMSGHNITATT 152
+ P+H WT+EE+ LVECL+ELVS G W+ DNG FRPGY + L +M+AE++ G + ATT
Sbjct: 61 RAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATT 120
Query: 153 -IDCRIKTMKRAFQTISEMKGPSCSGFGWNDELKCIIAKKDFYYNNTCTESSSRKRPPKP 212
IDCRIKT+KR FQ I+EM+GP+CSGFGWNDE KCI+A+K+ + N + +++ KP
Sbjct: 121 VIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKP 180
Query: 213 FPHYDDFCYVFGRDGATGGRAETFDDVGSNVP-SGFGGFLHYDGNDMEILTIYSQGLDMS 272
FP+YD+ YVF RD ATG AETF DVGSN P G+ F DGN+ + +YSQG+D+S
Sbjct: 181 FPYYDELTYVFCRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE-DFPPVYSQGVDIS 240
Query: 273 PDDIMGTRSVRMSEARAGSSESKRKQGG-----------AMEYANDQLNAIAEWPKEQRQ 332
DD+ +R R SE R GSS SKRK+G A++ N+QL IAEWP
Sbjct: 241 QDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLA 300
Query: 333 YASMTRAEVVRQIQGIPELSRLDRVHCMRIMMRSVDDMKAFIDIPNELKLDYCTVILQD 378
+ R E R ++ +PEL+ LDR R ++ +DD++ F+ +P + + +C V+L+D
Sbjct: 301 NDNHMRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRD 354
BLAST of PI0014976 vs. NCBI nr
Match:
KAA0035621.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046728.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0052099.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0054495.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 319.7 bits (818), Expect = 3.4e-83
Identity = 160/303 (52.81%), Postives = 216/303 (71.29%), Query Frame = 0
Query: 87 MATSSKTPKHHWTKEEDAVLVECLVELVSSGKWRLDNGMFRPGYHSHLQKMIAERMSGHN 146
M +SS+ PKH WTKEE+A LVECLVELV++G WR DNG FRPGY + L +M+A ++ G N
Sbjct: 1 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60
Query: 147 ITATTIDCRIKTMKRAFQTISEMKGPSCSGFGWNDELKCIIAKKDFYYNNTCTESSSRKR 206
I A+TID RIK MKR F ++EM+GP+CSGFGWNDE KCI+A+K+ + + + +++
Sbjct: 61 IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVF--DDWSHPAAKGL 120
Query: 207 PPKPFPHYDDFCYVFGRDGATGGRAETFDDVGSNVPSGFGGFLHYDGNDMEILTIYSQGL 266
K F HYD+ YVFG+D ATGGRAE+F D+GSN P G+ D + +YS GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAVAADAMPDTDFPPMYSPGL 180
Query: 267 DMSPDDIMGTRSVRMSEARAGSSESKRKQGG-----------AMEYANDQLNAIAEWPKE 326
+MSPDD+M TR+ R+SE R SS SKRK+ G A+EY N+QL+ IAEWP
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240
Query: 327 QRQYASMTRAEVVRQIQGIPELSRLDRVHCMRIMMRSVDDMKAFIDIPNELKLDYCTVIL 379
QRQ A+ TR E+VR ++ IPEL+ +DR MRI+MR+VDDMKAF+++P+ +K YC++IL
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 300
BLAST of PI0014976 vs. NCBI nr
Match:
KAA0035413.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK25738.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 318.9 bits (816), Expect = 5.8e-83
Identity = 167/316 (52.85%), Postives = 212/316 (67.09%), Query Frame = 0
Query: 24 LLHNLINREMTNTDIPDDVDEGESTHATTGGEEIHYIETSSAWSQWRDELAERMFSDWEL 83
LLHNLINREM DI DD+DE +STHAT+ ++IHYIETS+ W++WRD+L E MFS+WEL
Sbjct: 44 LLHNLINREMKTFDIVDDIDEVDSTHATSAADDIHYIETSNEWTRWRDDLDEEMFSEWEL 103
Query: 84 RNNMATSSKTPKHHWTKEEDAVLVECLVELVSSGKWRLDNGMFRPGYHSHLQKMIAERMS 143
RN+MA+S + KH+WTKEE+A LVECLVELV++G WR DNG FRPG
Sbjct: 104 RNDMASSLRLLKHNWTKEEEAGLVECLVELVNAGGWRSDNGTFRPG-------------- 163
Query: 144 GHNITATTIDCRIKTMKRAFQTISEMKGPSCSGFGWNDELKCIIAKKDFYYNNTCTESSS 203
RIK +KR F I+EM GP+CS FGWNDE KCI+A+K+ + N + ++
Sbjct: 164 -----------RIKLLKRMFHAIAEMCGPTCSRFGWNDEQKCIVAEKEVFDNWVKSHPTA 223
Query: 204 RKRPPKPFPHYDDFCYVFGRDGATGGRAETFDDVGSNVPSGFGGFLHYDGNDMEILTIYS 263
+ K FPHYD+ YVFG+D ATGGRAE+F D+G N P+G+ F D + +YS
Sbjct: 224 KGLLNKSFPHYDELSYVFGKDRATGGRAESFADIGLNDPAGYEPFAVDATPDTDFQPMYS 283
Query: 264 QGLDMSPDDIMGTRSVRMSEARAGSSESKRKQGG-----------AMEYANDQLNAIAEW 323
QGL+MSPD++MG R+ ++SE R SS SKRK+ G A+EY N+QLN IAEW
Sbjct: 284 QGLNMSPDELMGIRNAQVSEGRYVSSGSKRKRKGQATDSGDVLRTAIEYGNEQLNCIAEW 334
Query: 324 PKEQRQYASMTRAEVV 329
P QRQ AS TR EVV
Sbjct: 344 PILQRQDASQTRQEVV 334
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| E5GCB5 | 4.4e-105 | 54.37 | Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1 | [more] |
| A0A5A7TDD6 | 6.7e-93 | 50.70 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7T091 | 5.5e-87 | 48.47 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5D3DPR5 | 1.6e-83 | 52.81 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7UME4 | 2.8e-83 | 52.81 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| ADN34114.1 | 9.2e-105 | 54.37 | retrotransposon protein [Cucumis melo subsp. melo] | [more] |
| KAA0041444.1 | 1.4e-92 | 50.70 | retrotransposon protein [Cucumis melo var. makuwa] >TYK24318.1 retrotransposon p... | [more] |
| KAA0036924.1 | 1.1e-86 | 48.47 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0035621.1 | 3.4e-83 | 52.81 | retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon... | [more] |
| KAA0035413.1 | 5.8e-83 | 52.85 | retrotransposon protein [Cucumis melo var. makuwa] >TYK25738.1 retrotransposon p... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
